http://52.214.119.220/wiki/index.php?action=history&feed=atom&title=Help%3AUploading_molecules 2026-04-15T13:38:04Z Revision history for this page on the wiki MediaWiki 1.11.2 http://52.214.119.220/wiki/index.php?title=Help:Uploading_molecules&diff=3355122&oldid=prev 2021-02-16T21:10:08Z

<p></p> <table style="background-color: white; color:black;"> <col class='diff-marker' /> <col class='diff-content' /> <col class='diff-marker' /> <col class='diff-content' /> <tr> <td colspan='2' style="background-color: white; color:black;">←Older revision</td> <td colspan='2' style="background-color: white; color:black;">Revision as of 21:10, 16 February 2021</td> </tr> <tr><td colspan="2" class="diff-lineno">Line 1:</td> <td colspan="2" class="diff-lineno">Line 1:</td></tr> <tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div>This article gives step by step instructions for uploading an [[atomic coordinate file]] (a &quot;molecule&quot; or [[PDB file]]) for use in molecular scenes in Proteopedia.</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>This article gives step by step instructions for uploading an [[atomic coordinate file]] (a &quot;molecule&quot; or [[PDB file]]) for use in molecular scenes in Proteopedia<ins style="color: red; font-weight: bold; text-decoration: none;">. For uploading other types of files, see [[Help:Multimedia]]</ins>.</div></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>This article assumes you are familiar with Proteopedia's [[Scene authoring tools|Molecular Scene Authoring Tools]] ([[SAT]]). If you want to improve your familiarity with the SAT, the best place to start is with the [[Proteopedia:Video_Guide|Video Guides]].</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>This article assumes you are familiar with Proteopedia's [[Scene authoring tools|Molecular Scene Authoring Tools]] ([[SAT]]). If you want to improve your familiarity with the SAT, the best place to start is with the [[Proteopedia:Video_Guide|Video Guides]].</div></td></tr> </table>

Karsten Theis http://52.214.119.220/wiki/index.php?title=Help:Uploading_molecules&diff=2879037&oldid=prev 2018-03-31T04:21:58Z

<p></p> <table style="background-color: white; color:black;"> <col class='diff-marker' /> <col class='diff-content' /> <col class='diff-marker' /> <col class='diff-content' /> <tr> <td colspan='2' style="background-color: white; color:black;">←Older revision</td> <td colspan='2' style="background-color: white; color:black;">Revision as of 04:21, 31 March 2018</td> </tr> <tr><td colspan="2" class="diff-lineno">Line 81:</td> <td colspan="2" class="diff-lineno">Line 81:</td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>'''Theoretical models''': If your model is a macromolecule [[Theoretical models|generated from theory (ab initio, homology modeling)]], copy the template below and paste it into the very top of your page.</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>'''Theoretical models''': If your model is a macromolecule [[Theoretical models|generated from theory (ab initio, homology modeling)]], copy the template below and paste it into the very top of your page.</div></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr> <tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div><del style="color: red; font-weight: bold; text-decoration: none;"> &amp;#123;</del>&lt;nowiki<del style="color: red; font-weight: bold; text-decoration: none;">&gt;{Theoretical_model&lt;/nowiki&gt;&amp;#125;&amp;#125;</del></div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>&lt;nowiki&gt;{{Theoretical_model}}&lt;/<ins style="color: red; font-weight: bold; text-decoration: none;">nowiki</ins>&gt;</div></td></tr> <tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div><del style="color: red; font-weight: bold; text-decoration: none;">&lt;pre</del>&gt;{{Theoretical_model}}&lt;/<del style="color: red; font-weight: bold; text-decoration: none;">pre</del>&gt;</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div></div></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>This will display a cautionary banner at the top of your page, like the one at the top of [[Structure of E. coli DnaC helicase loader]]. If your model was determined by empirical experiment, such as [[X-ray crystallography]] or [[NMR]], or if it is a small molecule (less than 100 atoms), it is not necessary to include this caution.</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>This will display a cautionary banner at the top of your page, like the one at the top of [[Structure of E. coli DnaC helicase loader]]. If your model was determined by empirical experiment, such as [[X-ray crystallography]] or [[NMR]], or if it is a small molecule (less than 100 atoms), it is not necessary to include this caution.</div></td></tr> </table>

Jaime Prilusky http://52.214.119.220/wiki/index.php?title=Help:Uploading_molecules&diff=2878952&oldid=prev 2018-03-30T18:54:06Z

<p><span class="autocomment">How to create a molecular scene showing the uploaded PDB file</span></p> <table style="background-color: white; color:black;"> <col class='diff-marker' /> <col class='diff-content' /> <col class='diff-marker' /> <col class='diff-content' /> <tr> <td colspan='2' style="background-color: white; color:black;">←Older revision</td> <td colspan='2' style="background-color: white; color:black;">Revision as of 18:54, 30 March 2018</td> </tr> <tr><td colspan="2" class="diff-lineno">Line 82:</td> <td colspan="2" class="diff-lineno">Line 82:</td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div> &amp;#123;&lt;nowiki&gt;{Theoretical_model&lt;/nowiki&gt;&amp;#125;&amp;#125;</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div> &amp;#123;&lt;nowiki&gt;{Theoretical_model&lt;/nowiki&gt;&amp;#125;&amp;#125;</div></td></tr> <tr><td colspan="2">&nbsp;</td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>&lt;pre&gt;{{Theoretical_model}}&lt;/pre&gt;</div></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>This will display a cautionary banner at the top of your page, like the one at the top of [[Structure of E. coli DnaC helicase loader]]. If your model was determined by empirical experiment, such as [[X-ray crystallography]] or [[NMR]], or if it is a small molecule (less than 100 atoms), it is not necessary to include this caution.</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>This will display a cautionary banner at the top of your page, like the one at the top of [[Structure of E. coli DnaC helicase loader]]. If your model was determined by empirical experiment, such as [[X-ray crystallography]] or [[NMR]], or if it is a small molecule (less than 100 atoms), it is not necessary to include this caution.</div></td></tr> </table>

Eric Martz http://52.214.119.220/wiki/index.php?title=Help:Uploading_molecules&diff=2878931&oldid=prev 2018-03-30T18:38:18Z

<p><span class="autocomment">How to create a molecular scene showing the uploaded PDB file</span></p> <table style="background-color: white; color:black;"> <col class='diff-marker' /> <col class='diff-content' /> <col class='diff-marker' /> <col class='diff-content' /> <tr> <td colspan='2' style="background-color: white; color:black;">←Older revision</td> <td colspan='2' style="background-color: white; color:black;">Revision as of 18:38, 30 March 2018</td> </tr> <tr><td colspan="2" class="diff-lineno">Line 81:</td> <td colspan="2" class="diff-lineno">Line 81:</td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>'''Theoretical models''': If your model is a macromolecule [[Theoretical models|generated from theory (ab initio, homology modeling)]], copy the template below and paste it into the very top of your page.</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>'''Theoretical models''': If your model is a macromolecule [[Theoretical models|generated from theory (ab initio, homology modeling)]], copy the template below and paste it into the very top of your page.</div></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr> <tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div> &amp;#123;{Theoretical_model&amp;#125;&amp;#125;</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div> &amp;#123;<ins style="color: red; font-weight: bold; text-decoration: none;">&lt;nowiki&gt;</ins>{Theoretical_model<ins style="color: red; font-weight: bold; text-decoration: none;">&lt;/nowiki&gt;</ins>&amp;#125;&amp;#125;</div></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>This will display a cautionary banner at the top of your page, like the one at the top of [[Structure of E. coli DnaC helicase loader]]. If your model was determined by empirical experiment, such as [[X-ray crystallography]] or [[NMR]], or if it is a small molecule (less than 100 atoms), it is not necessary to include this caution.</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>This will display a cautionary banner at the top of your page, like the one at the top of [[Structure of E. coli DnaC helicase loader]]. If your model was determined by empirical experiment, such as [[X-ray crystallography]] or [[NMR]], or if it is a small molecule (less than 100 atoms), it is not necessary to include this caution.</div></td></tr> </table>

Eric Martz http://52.214.119.220/wiki/index.php?title=Help:Uploading_molecules&diff=2878929&oldid=prev 2018-03-30T18:37:45Z

<p><span class="autocomment">How to create a molecular scene showing the uploaded PDB file</span></p> <table style="background-color: white; color:black;"> <col class='diff-marker' /> <col class='diff-content' /> <col class='diff-marker' /> <col class='diff-content' /> <tr> <td colspan='2' style="background-color: white; color:black;">←Older revision</td> <td colspan='2' style="background-color: white; color:black;">Revision as of 18:37, 30 March 2018</td> </tr> <tr><td colspan="2" class="diff-lineno">Line 81:</td> <td colspan="2" class="diff-lineno">Line 81:</td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>'''Theoretical models''': If your model is a macromolecule [[Theoretical models|generated from theory (ab initio, homology modeling)]], copy the template below and paste it into the very top of your page.</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>'''Theoretical models''': If your model is a macromolecule [[Theoretical models|generated from theory (ab initio, homology modeling)]], copy the template below and paste it into the very top of your page.</div></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr> <tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div> &amp;#123;<del style="color: red; font-weight: bold; text-decoration: none;">&amp;#123;</del>Theoretical_model&amp;#125;&amp;#125;</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div> &amp;#123;<ins style="color: red; font-weight: bold; text-decoration: none;">{</ins>Theoretical_model&amp;#125;&amp;#125;</div></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>This will display a cautionary banner at the top of your page, like the one at the top of [[Structure of E. coli DnaC helicase loader]]. If your model was determined by empirical experiment, such as [[X-ray crystallography]] or [[NMR]], or if it is a small molecule (less than 100 atoms), it is not necessary to include this caution.</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>This will display a cautionary banner at the top of your page, like the one at the top of [[Structure of E. coli DnaC helicase loader]]. If your model was determined by empirical experiment, such as [[X-ray crystallography]] or [[NMR]], or if it is a small molecule (less than 100 atoms), it is not necessary to include this caution.</div></td></tr> </table>

Eric Martz http://52.214.119.220/wiki/index.php?title=Help:Uploading_molecules&diff=2878926&oldid=prev 2018-03-30T18:37:08Z

<p><span class="autocomment">How to create a molecular scene showing the uploaded PDB file</span></p> <table style="background-color: white; color:black;"> <col class='diff-marker' /> <col class='diff-content' /> <col class='diff-marker' /> <col class='diff-content' /> <tr> <td colspan='2' style="background-color: white; color:black;">←Older revision</td> <td colspan='2' style="background-color: white; color:black;">Revision as of 18:37, 30 March 2018</td> </tr> <tr><td colspan="2" class="diff-lineno">Line 81:</td> <td colspan="2" class="diff-lineno">Line 81:</td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>'''Theoretical models''': If your model is a macromolecule [[Theoretical models|generated from theory (ab initio, homology modeling)]], copy the template below and paste it into the very top of your page.</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>'''Theoretical models''': If your model is a macromolecule [[Theoretical models|generated from theory (ab initio, homology modeling)]], copy the template below and paste it into the very top of your page.</div></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr> <tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div>&amp;#123;&amp;#123;Theoretical_model&amp;#125;&amp;#125;</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;"> </ins>&amp;#123;&amp;#123;Theoretical_model&amp;#125;&amp;#125;</div></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>This will display a cautionary banner at the top of your page, like the one at the top of [[Structure of E. coli DnaC helicase loader]]. If your model was determined by empirical experiment, such as [[X-ray crystallography]] or [[NMR]], or if it is a small molecule (less than 100 atoms), it is not necessary to include this caution.</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>This will display a cautionary banner at the top of your page, like the one at the top of [[Structure of E. coli DnaC helicase loader]]. If your model was determined by empirical experiment, such as [[X-ray crystallography]] or [[NMR]], or if it is a small molecule (less than 100 atoms), it is not necessary to include this caution.</div></td></tr> </table>

Eric Martz http://52.214.119.220/wiki/index.php?title=Help:Uploading_molecules&diff=2878924&oldid=prev 2018-03-30T18:36:37Z

<p><span class="autocomment">How to create a molecular scene showing the uploaded PDB file</span></p> <table style="background-color: white; color:black;"> <col class='diff-marker' /> <col class='diff-content' /> <col class='diff-marker' /> <col class='diff-content' /> <tr> <td colspan='2' style="background-color: white; color:black;">←Older revision</td> <td colspan='2' style="background-color: white; color:black;">Revision as of 18:36, 30 March 2018</td> </tr> <tr><td colspan="2" class="diff-lineno">Line 81:</td> <td colspan="2" class="diff-lineno">Line 81:</td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>'''Theoretical models''': If your model is a macromolecule [[Theoretical models|generated from theory (ab initio, homology modeling)]], copy the template below and paste it into the very top of your page.</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>'''Theoretical models''': If your model is a macromolecule [[Theoretical models|generated from theory (ab initio, homology modeling)]], copy the template below and paste it into the very top of your page.</div></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr> <tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div>&amp;#123;<del style="color: red; font-weight: bold; text-decoration: none;">&lt;nowiki&gt;{{&lt;/nowiki&gt;</del>Theoretical_model<del style="color: red; font-weight: bold; text-decoration: none;">&lt;nowiki&gt;}}&lt;/nowiki&gt;</del></div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>&amp;#123;<ins style="color: red; font-weight: bold; text-decoration: none;">&amp;#123;</ins>Theoretical_model<ins style="color: red; font-weight: bold; text-decoration: none;">&amp;#125;&amp;#125;</ins></div></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>This will display a cautionary banner at the top of your page, like the one at the top of [[Structure of E. coli DnaC helicase loader]]. If your model was determined by empirical experiment, such as [[X-ray crystallography]] or [[NMR]], or if it is a small molecule (less than 100 atoms), it is not necessary to include this caution.</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>This will display a cautionary banner at the top of your page, like the one at the top of [[Structure of E. coli DnaC helicase loader]]. If your model was determined by empirical experiment, such as [[X-ray crystallography]] or [[NMR]], or if it is a small molecule (less than 100 atoms), it is not necessary to include this caution.</div></td></tr> </table>

Eric Martz http://52.214.119.220/wiki/index.php?title=Help:Uploading_molecules&diff=2878923&oldid=prev 2018-03-30T18:35:20Z

<p><span class="autocomment">How to create a molecular scene showing the uploaded PDB file</span></p> <table style="background-color: white; color:black;"> <col class='diff-marker' /> <col class='diff-content' /> <col class='diff-marker' /> <col class='diff-content' /> <tr> <td colspan='2' style="background-color: white; color:black;">←Older revision</td> <td colspan='2' style="background-color: white; color:black;">Revision as of 18:35, 30 March 2018</td> </tr> <tr><td colspan="2" class="diff-lineno">Line 81:</td> <td colspan="2" class="diff-lineno">Line 81:</td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>'''Theoretical models''': If your model is a macromolecule [[Theoretical models|generated from theory (ab initio, homology modeling)]], copy the template below and paste it into the very top of your page.</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>'''Theoretical models''': If your model is a macromolecule [[Theoretical models|generated from theory (ab initio, homology modeling)]], copy the template below and paste it into the very top of your page.</div></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr> <tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div>&lt;nowiki&gt;{{&lt;/nowiki&gt;Theoretical_model&lt;nowiki&gt;}}&lt;/nowiki&gt;</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;">&amp;#123;</ins>&lt;nowiki&gt;{{&lt;/nowiki&gt;Theoretical_model&lt;nowiki&gt;}}&lt;/nowiki&gt;</div></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>This will display a cautionary banner at the top of your page, like the one at the top of [[Structure of E. coli DnaC helicase loader]]. If your model was determined by empirical experiment, such as [[X-ray crystallography]] or [[NMR]], or if it is a small molecule (less than 100 atoms), it is not necessary to include this caution.</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>This will display a cautionary banner at the top of your page, like the one at the top of [[Structure of E. coli DnaC helicase loader]]. If your model was determined by empirical experiment, such as [[X-ray crystallography]] or [[NMR]], or if it is a small molecule (less than 100 atoms), it is not necessary to include this caution.</div></td></tr> </table>

Eric Martz http://52.214.119.220/wiki/index.php?title=Help:Uploading_molecules&diff=2878916&oldid=prev 2018-03-30T18:33:29Z

<p><span class="autocomment">How to create a molecular scene showing the uploaded PDB file</span></p> <table style="background-color: white; color:black;"> <col class='diff-marker' /> <col class='diff-content' /> <col class='diff-marker' /> <col class='diff-content' /> <tr> <td colspan='2' style="background-color: white; color:black;">←Older revision</td> <td colspan='2' style="background-color: white; color:black;">Revision as of 18:33, 30 March 2018</td> </tr> <tr><td colspan="2" class="diff-lineno">Line 81:</td> <td colspan="2" class="diff-lineno">Line 81:</td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>'''Theoretical models''': If your model is a macromolecule [[Theoretical models|generated from theory (ab initio, homology modeling)]], copy the template below and paste it into the very top of your page.</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>'''Theoretical models''': If your model is a macromolecule [[Theoretical models|generated from theory (ab initio, homology modeling)]], copy the template below and paste it into the very top of your page.</div></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr> <tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div>&lt;nowiki&gt;{{Theoretical_model}}&lt;/nowiki&gt;</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>&lt;nowiki&gt;{{<ins style="color: red; font-weight: bold; text-decoration: none;">&lt;/nowiki&gt;</ins>Theoretical_model<ins style="color: red; font-weight: bold; text-decoration: none;">&lt;nowiki&gt;</ins>}}&lt;/nowiki&gt;</div></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>This will display a cautionary banner at the top of your page, like the one at the top of [[Structure of E. coli DnaC helicase loader]]. If your model was determined by empirical experiment, such as [[X-ray crystallography]] or [[NMR]], or if it is a small molecule (less than 100 atoms), it is not necessary to include this caution.</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>This will display a cautionary banner at the top of your page, like the one at the top of [[Structure of E. coli DnaC helicase loader]]. If your model was determined by empirical experiment, such as [[X-ray crystallography]] or [[NMR]], or if it is a small molecule (less than 100 atoms), it is not necessary to include this caution.</div></td></tr> </table>

Eric Martz http://52.214.119.220/wiki/index.php?title=Help:Uploading_molecules&diff=2878914&oldid=prev 2018-03-30T18:32:46Z

<p><span class="autocomment">How to create a molecular scene showing the uploaded PDB file</span></p> <table style="background-color: white; color:black;"> <col class='diff-marker' /> <col class='diff-content' /> <col class='diff-marker' /> <col class='diff-content' /> <tr> <td colspan='2' style="background-color: white; color:black;">←Older revision</td> <td colspan='2' style="background-color: white; color:black;">Revision as of 18:32, 30 March 2018</td> </tr> <tr><td colspan="2" class="diff-lineno">Line 81:</td> <td colspan="2" class="diff-lineno">Line 81:</td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>'''Theoretical models''': If your model is a macromolecule [[Theoretical models|generated from theory (ab initio, homology modeling)]], copy the template below and paste it into the very top of your page.</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>'''Theoretical models''': If your model is a macromolecule [[Theoretical models|generated from theory (ab initio, homology modeling)]], copy the template below and paste it into the very top of your page.</div></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr> <tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div><del style="color: red; font-weight: bold; text-decoration: none;">:</del>&lt;nowiki&gt;{{Theoretical_model}}&lt;/nowiki&gt;</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>&lt;nowiki&gt;{{Theoretical_model}}&lt;/nowiki&gt;</div></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>This will display a cautionary banner at the top of your page, like the one at the top of [[Structure of E. coli DnaC helicase loader]]. If your model was determined by empirical experiment, such as [[X-ray crystallography]] or [[NMR]], or if it is a small molecule (less than 100 atoms), it is not necessary to include this caution.</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>This will display a cautionary banner at the top of your page, like the one at the top of [[Structure of E. coli DnaC helicase loader]]. If your model was determined by empirical experiment, such as [[X-ray crystallography]] or [[NMR]], or if it is a small molecule (less than 100 atoms), it is not necessary to include this caution.</div></td></tr> </table>

Eric Martz