JMS/Sandbox/SMART HLA - Revision history

Joseph M. Steinberger at 14:06, 23 June 2015

2015-06-23T14:06:25Z

←Older revision		Revision as of 14:06, 23 June 2015
Line 31:		Line 31:

	all switches: 1,4,12,15,27,28,35,51,53,66,74,87,101,123,126,128,132,140,142,151		all switches: 1,4,12,15,27,28,35,51,53,66,74,87,101,123,126,128,132,140,142,151
		+	<br/><br/>
	charge switches: 12,53,87,113,116		charge switches: 12,53,87,113,116

	== References ==		== References ==
	<references/>		<references/>

Joseph M. Steinberger at 14:02, 23 June 2015

2015-06-23T14:02:35Z

←Older revision		Revision as of 14:02, 23 June 2015
Line 11:		Line 11:

	== Structural highlights ==		== Structural highlights ==
-	<scene name='70/705122/~~Myoglobin_wcsp_1~~/1'>whale ~~cat~~ seal and ~~pig~~, ~~oh my!~~</scene>	+	<scene name='70/705122/Myoglobin_pairs/1'>aligned sperm whale w, pig p, grey seal s, and cat c.
-	~~This is a sample~~ scene ~~created~~ with ~~SAT to~~ <scene name="/12/~~3456~~/~~Sample~~/1">~~color~~</scene> ~~by Group,~~ and ~~another to make~~ <scene name="/12/~~3456~~/~~Sample~~/2">~~a transparent representation~~</scene> of the ~~protein~~. ~~You can make your own scenes on SAT starting from scratch or loading and editing one~~ of ~~these sample scenes~~.	+	w and p are a group, and s and c, are a group.</scene>
		+	<br/><br/><scene name='70/705122/Myoglobin_pairs/2'>general disk like structure of myoglobin, with heme ligand.</scene>
		+	<br/><br/><scene name='70/705122/Myoglobin_pairs/3'>hydrophobic residues (gly, ala,val,leu,ile,pro,phe,met,trp), that are on surface</scene>
		+	<br/><br/><scene name='70/705122/Hydrophobic_core/1'>hydrophic residues only in the core</scene>
		+	<br/><br/><scene name='70/705122/Myoglobin_pairs/4'>hydrophic residues only in the core</scene>
		+	<br/><br/><scene name='70/705122/Myoglobin_pairs/5'>general statement that w and p differ in several amino acids</scene>
		+	<br/><br/><scene name='70/705122/Sickle_hemoglobin_chain_close/1'>hemoglobin as classic case of hydrophobic patch based aggregation</scene>
		+	<br/><br/><scene name='70/705122/Sickle_hemoglobin_chain_close/2'>zoomed out. hemoglobin as classic case of hydrophobic patch based aggregation</scene>
		+	<br/><br/><scene name='70/705122/Myoglobin_pairs/6'>divergent charged aa leading to delta 4</scene>
		+	<br/><br/><scene name='70/705122/Myoglobin_pairs/7'>stick/wireframe. divergent charged aa leading to delta 4</scene>
		+	<br/><br/><scene name='70/705122/Myoglobin_pairs/8'>mutations not in site of heme, so not o-binding. rather, net charge change leading to solubility increase.</scene>
		+	<br/><br/><scene name='70/705122/Myoglobin_pairs/9'>no negative to hydrophobic mutations for pig to whale, which would have increased net charge at the expense of creating hydrophobic patches.</scene>
		+	<br/><br/><scene name='70/705122/Myoglobin_pairs/10'>with halos. no negative to hydrophobic mutations for pig to whale, which would have increased net charge at the expense of creating hydrophobic patches.</scene>
		+	<br/><br/><scene name='70/705122/Sickle_hemoglobin_chain_close/2'>zoomed out. hemoglobin as classic case of hydrophobic patch based aggregation</scene>
		+	<br/><br/><scene name='70/705122/Myoglobin_pairs/11'>mutations overwhelming occur on the surface.</scene>

	</StructureSection>		</StructureSection>
		+
		+	all switches: 1,4,12,15,27,28,35,51,53,66,74,87,101,123,126,128,132,140,142,151
		+	charge switches: 12,53,87,113,116
		+
	== References ==		== References ==
	<references/>		<references/>

Joseph M. Steinberger at 21:46, 22 June 2015

2015-06-22T21:46:44Z

←Older revision		Revision as of 21:46, 22 June 2015
Line 11:		Line 11:

	== Structural highlights ==		== Structural highlights ==
-		+	<scene name='70/705122/Myoglobin_wcsp_1/1'>whale cat seal and pig, oh my!</scene>
	This is a sample scene created with SAT to <scene name="/12/3456/Sample/1">color</scene> by Group, and another to make <scene name="/12/3456/Sample/2">a transparent representation</scene> of the protein. You can make your own scenes on SAT starting from scratch or loading and editing one of these sample scenes.		This is a sample scene created with SAT to <scene name="/12/3456/Sample/1">color</scene> by Group, and another to make <scene name="/12/3456/Sample/2">a transparent representation</scene> of the protein. You can make your own scenes on SAT starting from scratch or loading and editing one of these sample scenes.

Joseph M. Steinberger at 21:25, 22 June 2015

2015-06-22T21:25:33Z

←Older revision		Revision as of 21:25, 22 June 2015
Line 1:		Line 1:
	==Your Heading Here (maybe something like 'Structure')==		==Your Heading Here (maybe something like 'Structure')==
-	<StructureSection load='~~1stp~~' size='340' side='right' caption='Caption for this structure' scene=''>	+	<StructureSection load='1mbn' size='340' side='right' caption='Caption for this structure' scene=''>
	This is a default text for your page '''JMS/Sandbox/SMART HLA'''. Click above on '''edit this page''' to modify. Be careful with the < and > signs.		This is a default text for your page '''JMS/Sandbox/SMART HLA'''. Click above on '''edit this page''' to modify. Be careful with the < and > signs.
	You may include any references to papers as in: the use of JSmol in Proteopedia <ref>DOI 10.1002/ijch.201300024</ref> or to the article describing Jmol <ref>PMID:21638687</ref> to the rescue.		You may include any references to papers as in: the use of JSmol in Proteopedia <ref>DOI 10.1002/ijch.201300024</ref> or to the article describing Jmol <ref>PMID:21638687</ref> to the rescue.

Joseph M. Steinberger: New page: ==Your Heading Here (maybe something like 'Structure')== This is a default text for you...

2015-06-22T21:24:10Z

New page: ==Your Heading Here (maybe something like 'Structure')== <StructureSection load='1stp' size='340' side='right' caption='Caption for this structure' scene=''> This is a default text for you...

New page

==Your Heading Here (maybe something like 'Structure')==
<StructureSection load='1stp' size='340' side='right' caption='Caption for this structure' scene=''>
This is a default text for your page '''JMS/Sandbox/SMART HLA'''. Click above on '''edit this page''' to modify. Be careful with the < and > signs.
You may include any references to papers as in: the use of JSmol in Proteopedia <ref>DOI 10.1002/ijch.201300024</ref> or to the article describing Jmol <ref>PMID:21638687</ref> to the rescue.

== Function ==

== Disease ==

== Relevance ==

== Structural highlights ==

This is a sample scene created with SAT to <scene name="/12/3456/Sample/1">color</scene> by Group, and another to make <scene name="/12/3456/Sample/2">a transparent representation</scene> of the protein. You can make your own scenes on SAT starting from scratch or loading and editing one of these sample scenes.

</StructureSection>
== References ==
<references/>