http://52.214.119.220/wiki/index.php?action=history&feed=atom&title=Jmol%2FElectrostatic_potential
Jmol/Electrostatic potential - Revision history
2026-04-06T00:02:58Z
Revision history for this page on the wiki
MediaWiki 1.11.2
http://52.214.119.220/wiki/index.php?title=Jmol/Electrostatic_potential&diff=3302053&oldid=prev
Karsten Theis at 01:37, 11 October 2020
2020-10-11T01:37:21Z
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div> <jmolCheckbox></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div> <jmolCheckbox></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div> <scriptWhenUnChecked>isosurface off</scriptWhenUnChecked></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div> <scriptWhenUnChecked>isosurface off</scriptWhenUnChecked></div></td></tr>
<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div> <scriptWhenchecked>select all; isosurface molecular map mep; color isosurface range -0.05 0.05</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div> <scriptWhenchecked>select all; isosurface molecular map mep; color isosurface range -0.05 0.05<ins style="color: red; font-weight: bold; text-decoration: none;">; color isosurface translucent</ins></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div></scriptWhenchecked></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div></scriptWhenchecked></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div> <checked>false</checked> </div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div> <checked>false</checked> </div></td></tr>
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Karsten Theis
http://52.214.119.220/wiki/index.php?title=Jmol/Electrostatic_potential&diff=3302052&oldid=prev
Karsten Theis at 01:32, 11 October 2020
2020-10-11T01:32:30Z
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div> <jmolCheckbox></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div> <jmolCheckbox></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div> <scriptWhenUnChecked>isosurface off</scriptWhenUnChecked></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div> <scriptWhenUnChecked>isosurface off</scriptWhenUnChecked></div></td></tr>
<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div> <scriptWhenchecked>select all; isosurface molecular map mep color <del style="color: red; font-weight: bold; text-decoration: none;">translucent</del></scriptWhenchecked></div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div> <scriptWhenchecked>select all; isosurface molecular map mep<ins style="color: red; font-weight: bold; text-decoration: none;">; </ins>color <ins style="color: red; font-weight: bold; text-decoration: none;">isosurface range -0.05 0.05</ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div></scriptWhenchecked></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div> <checked>false</checked> </div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div> <checked>false</checked> </div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div> <text>potential map</text></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div> <text>potential map</text></div></td></tr>
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Karsten Theis
http://52.214.119.220/wiki/index.php?title=Jmol/Electrostatic_potential&diff=3302047&oldid=prev
Karsten Theis at 15:16, 10 October 2020
2020-10-10T15:16:38Z
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div> <jmolCheckbox></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div> <jmolCheckbox></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div> <scriptWhenUnChecked>isosurface off</scriptWhenUnChecked></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div> <scriptWhenUnChecked>isosurface off</scriptWhenUnChecked></div></td></tr>
<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div> <scriptWhenchecked>select all; isosurface JVXL "http://proteopedia.org/wiki/images/2/2c/1F36.jvxl" <del style="color: red; font-weight: bold; text-decoration: none;">color translucent</del></scriptWhenchecked></div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div> <scriptWhenchecked>select all; isosurface JVXL "http://proteopedia.org/wiki/images/2/2c/1F36.jvxl"</scriptWhenchecked></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div> <checked>false</checked> </div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div> <checked>false</checked> </div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div> <text>potential map</text></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div> <text>potential map</text></div></td></tr>
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Karsten Theis
http://52.214.119.220/wiki/index.php?title=Jmol/Electrostatic_potential&diff=3302046&oldid=prev
Karsten Theis at 15:08, 10 October 2020
2020-10-10T15:08:57Z
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div> <jmolCheckbox></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div> <jmolCheckbox></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div> <scriptWhenUnChecked>isosurface off</scriptWhenUnChecked></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div> <scriptWhenUnChecked>isosurface off</scriptWhenUnChecked></div></td></tr>
<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div> <scriptWhenchecked>select all; isosurface JVXL "http://proteopedia.org/wiki/images/2/2c/1F36.jvxl"</scriptWhenchecked></div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div> <scriptWhenchecked>select all; isosurface JVXL "http://proteopedia.org/wiki/images/2/2c/1F36.jvxl" <ins style="color: red; font-weight: bold; text-decoration: none;">color translucent</ins></scriptWhenchecked></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div> <checked>false</checked> </div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div> <checked>false</checked> </div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div> <text>potential map</text></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div> <text>potential map</text></div></td></tr>
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Karsten Theis
http://52.214.119.220/wiki/index.php?title=Jmol/Electrostatic_potential&diff=3302045&oldid=prev
Karsten Theis at 15:07, 10 October 2020
2020-10-10T15:07:56Z
<p></p>
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<td colspan='2' style="background-color: white; color:black;">Revision as of 15:07, 10 October 2020</td>
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>DNA-binding (and DNA-bending) of <scene name='86/864093/Fis/1'>FIS</scene> is believed to be mostly electrostatic, explaining the low sequence-specificity and the high sensitive of interactions to ionic strength of the solvent.</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>DNA-binding (and DNA-bending) of <scene name='86/864093/Fis/1'>FIS</scene> is believed to be mostly electrostatic, explaining the low sequence-specificity and the high sensitive of interactions to ionic strength of the solvent.</div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>Use this checkbox to toggle the potential on and off:</div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><jmol></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div> <jmolCheckbox></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div> <scriptWhenUnChecked>isosurface off</scriptWhenUnChecked></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div> <scriptWhenchecked>select all; isosurface JVXL "http://proteopedia.org/wiki/images/2/2c/1F36.jvxl"</scriptWhenchecked></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div> <checked>false</checked> </div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div> <text>potential map</text></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div> </jmolCheckbox></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div></jmol></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div></StructureSection></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div></StructureSection></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>== References ==</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>== References ==</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><references/></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><references/></div></td></tr>
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Karsten Theis
http://52.214.119.220/wiki/index.php?title=Jmol/Electrostatic_potential&diff=3302044&oldid=prev
Karsten Theis at 14:59, 10 October 2020
2020-10-10T14:59:56Z
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>===Example 2: the DNA-binding protein FIS===</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>===Example 2: the DNA-binding protein FIS===</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>DNA-binding (and DNA-bending) of <scene name='86/864093/Fis/1'>FIS</scene> is believed to be mostly electrostatic, explaining the low sequence-specificity and the high sensitive of interactions to ionic strength of the solvent.</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div></StructureSection></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div></StructureSection></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>== References ==</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>== References ==</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><references/></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><references/></div></td></tr>
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Karsten Theis
http://52.214.119.220/wiki/index.php?title=Jmol/Electrostatic_potential&diff=3302041&oldid=prev
Karsten Theis at 14:06, 10 October 2020
2020-10-10T14:06:28Z
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<td colspan='2' style="background-color: white; color:black;">Revision as of 14:06, 10 October 2020</td>
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>===Example 1: water===</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>===Example 1: water===</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>Electrostatic potential of <scene name='86/864093/Water/1'>water</scene> based on partial charges calculated in molcalc.org.</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>Electrostatic potential of <scene name='86/864093/Water/1'>water</scene> based on partial charges calculated in molcalc.org.</div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>Use this checkbox to toggle the potential on and off:</div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><jmol></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div> <jmolCheckbox></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div> <scriptWhenUnChecked>isosurface off</scriptWhenUnChecked></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div> <scriptWhenchecked>select all; isosurface molecular map mep color translucent</scriptWhenchecked></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div> <checked>false</checked> </div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div> <text>potential map</text></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div> </jmolCheckbox></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div></jmol></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>After loading the .smol file, the following command was used to show the potential:</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>After loading the .smol file, the following command was used to show the potential:</div></td></tr>
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Karsten Theis
http://52.214.119.220/wiki/index.php?title=Jmol/Electrostatic_potential&diff=3302040&oldid=prev
Karsten Theis at 14:03, 10 October 2020
2020-10-10T14:03:14Z
<p></p>
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<td colspan='2' style="background-color: white; color:black;">Revision as of 14:03, 10 October 2020</td>
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>molcalc.org, e.g. http://molcalc.org/calculation/cc11a07f2bb4579391c1e0603665f673#/solvation</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>molcalc.org, e.g. http://molcalc.org/calculation/cc11a07f2bb4579391c1e0603665f673#/solvation</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr>
<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div> </div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;">Some theory on the Poisson Boltzmann equation: DOI:10.1002/jmr.577</ins></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div> </div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div> </div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><StructureSection load='1F36' size='340' side='right' caption='' scene=''></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><StructureSection load='1F36' size='340' side='right' caption='' scene=''></div></td></tr>
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>===Example 1: water===</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>===Example 1: water===</div></td></tr>
<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div>Electrostatic potential of water based on partial charges calculated in molcalc.org.</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>Electrostatic potential of <ins style="color: red; font-weight: bold; text-decoration: none;"><scene name='86/864093/Water/1'></ins>water<ins style="color: red; font-weight: bold; text-decoration: none;"></scene> </ins>based on partial charges calculated in molcalc.org.</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>After loading the .smol file, the following command was used to show the potential:</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>After loading the .smol file, the following command was used to show the potential:</div></td></tr>
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Karsten Theis
http://52.214.119.220/wiki/index.php?title=Jmol/Electrostatic_potential&diff=3302039&oldid=prev
Karsten Theis at 14:01, 10 October 2020
2020-10-10T14:01:41Z
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<td colspan='2' style="background-color: white; color:black;">Revision as of 14:01, 10 October 2020</td>
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>===Example 1: water===</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>===Example 1: water===</div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>Electrostatic potential of water based on partial charges calculated in molcalc.org.</div></td></tr>
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<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>After loading the .smol file, the following command was used to show the potential:</div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div> <nowiki>isosurface molecular map mep color translucent</nowiki></div></td></tr>
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Karsten Theis
http://52.214.119.220/wiki/index.php?title=Jmol/Electrostatic_potential&diff=3302037&oldid=prev
Karsten Theis at 13:55, 10 October 2020
2020-10-10T13:55:09Z
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><StructureSection load='1F36' size='340' side='right' caption='' scene=''></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><StructureSection load='1F36' size='340' side='right' caption='' scene=''></div></td></tr>
<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div><del style="color: red; font-weight: bold; text-decoration: none;">This is a default text for your page '''Jmol/Electrostatic potential'''. Click above on '''edit this page''' to modify. Be careful with the &lt; and &gt; signs.</del></div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div> </div></td></tr>
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>===Example 1: water===</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>===Example 1: water===</div></td></tr>
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Karsten Theis