Sandbox CsrA - Revision history

Wayne Decatur at 15:59, 14 March 2011

2011-03-14T15:59:32Z

←Older revision		Revision as of 15:59, 14 March 2011
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	The ''Vibrio'' structure described in this section was determined [[theoretical models\|theoretically]], and hence should be interpreted with caution.</td></tr></table>		The ''Vibrio'' structure described in this section was determined [[theoretical models\|theoretically]], and hence should be interpreted with caution.</td></tr></table>
	<Structure load='1vpz' size='500' frame='true' align='right' caption='CsRA structures aligned' scene='Sandbox_CsrA/Structuresplusmodel/5' />		<Structure load='1vpz' size='500' frame='true' align='right' caption='CsRA structures aligned' scene='Sandbox_CsrA/Structuresplusmodel/5' />
-
-	Display <scene name='Sandbox_CsrA/Structuresplusmodel/6'>backbone trace of aligned structures and model</scene>.
-

	{{Template:Checkbox Toggle CsrRNABinding}}		{{Template:Checkbox Toggle CsrRNABinding}}
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	{{Template:Checkbox Toggle Model2Cartoon}} (<font color="pink">'''Pseudomonas aeruginosa'''</font>)<br>		{{Template:Checkbox Toggle Model2Cartoon}} (<font color="pink">'''Pseudomonas aeruginosa'''</font>)<br>
	{{Template:Checkbox Toggle Model3Cartoon}} (<font color="wheat">'''Yersinia enterocolitica'''</font>)<br>		{{Template:Checkbox Toggle Model3Cartoon}} (<font color="wheat">'''Yersinia enterocolitica'''</font>)<br>
-	{{Template:Checkbox Toggle Model4Cartoon}} (<font color="~~wheat~~">'''Vibrio fischeri'''</font>)<br>	+	{{Template:Checkbox Toggle Model4Cartoon}} (<font color="magenta">'''Vibrio fischeri'''</font>)<br>


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	{{Template:Checkbox Toggle Model2BackboneTrace}} (<font color="pink">'''Pseudomonas aeruginosa'''</font>)<br>		{{Template:Checkbox Toggle Model2BackboneTrace}} (<font color="pink">'''Pseudomonas aeruginosa'''</font>)<br>
	{{Template:Checkbox Toggle Model3BackboneTrace}} (<font color="wheat">'''Yersinia enterocolitica'''</font>)<br>		{{Template:Checkbox Toggle Model3BackboneTrace}} (<font color="wheat">'''Yersinia enterocolitica'''</font>)<br>
-	{{Template:Checkbox Toggle Model4BackboneTrace}} (<font color="~~wheat~~">'''Vibrio fischeri'''</font>)<br>	+	{{Template:Checkbox Toggle Model4BackboneTrace}} (<font color="magenta">'''Vibrio fischeri'''</font>)<br>

Wayne Decatur at 15:56, 14 March 2011

2011-03-14T15:56:06Z

←Older revision	Revision as of 15:56, 14 March 2011
Line 194:	Line 194:


	+	===Aligned Structures===
	+	Display <scene name='Sandbox_CsrA/Structuresplusmodel/5'>cartoon representation of aligned CsrA structures</scene>.<br>
	+	{{Template:Checkbox Toggle Model1Cartoon}} (<font color="cyan">'''E. coli'''</font>) <br>
	+	{{Template:Checkbox Toggle Model2Cartoon}} (<font color="pink">'''Pseudomonas aeruginosa'''</font>)<br>
	+	{{Template:Checkbox Toggle Model3Cartoon}} (<font color="wheat">'''Yersinia enterocolitica'''</font>)<br>
	+	{{Template:Checkbox Toggle Model4Cartoon}} (<font color="wheat">'''Vibrio fischeri'''</font>)<br>

	+
	+
	+	Display <scene name='Sandbox_CsrA/Structuresplusmodel/6'>backbone trace of aligned CsrA structures</scene>.<br>
	+	{{Template:Checkbox Toggle Model1BackboneTrace}} (<font color="cyan">'''E. coli'''</font>) <br>
	+	{{Template:Checkbox Toggle Model2BackboneTrace}} (<font color="pink">'''Pseudomonas aeruginosa'''</font>)<br>
	+	{{Template:Checkbox Toggle Model3BackboneTrace}} (<font color="wheat">'''Yersinia enterocolitica'''</font>)<br>
	+	{{Template:Checkbox Toggle Model4BackboneTrace}} (<font color="wheat">'''Vibrio fischeri'''</font>)<br>

Wayne Decatur at 15:54, 14 March 2011

2011-03-14T15:54:18Z

←Older revision		Revision as of 15:54, 14 March 2011
Line 99:		Line 99:

	===Aligned Structures===		===Aligned Structures===
-	Display <scene name='Sandbox_CsrA/Csrapdbs/6'>cartoon representation of aligned CsrA structures</scene>.	+	Display <scene name='Sandbox_CsrA/Csrapdbs/6'>cartoon representation of aligned CsrA structures</scene>.<br>
	{{Template:Checkbox Toggle Model1Cartoon}} (<font color="cyan">'''E. coli'''</font>) <br>		{{Template:Checkbox Toggle Model1Cartoon}} (<font color="cyan">'''E. coli'''</font>) <br>
	{{Template:Checkbox Toggle Model2Cartoon}} (<font color="pink">'''Pseudomonas aeruginosa'''</font>)<br>		{{Template:Checkbox Toggle Model2Cartoon}} (<font color="pink">'''Pseudomonas aeruginosa'''</font>)<br>
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-	Display <scene name='Sandbox_CsrA/Csrapdbs/5'>backbone trace of aligned CsrA structures</scene>.	+	Display <scene name='Sandbox_CsrA/Csrapdbs/5'>backbone trace of aligned CsrA structures</scene>.<br>
-		+	{{Template:Checkbox Toggle Model1BackboneTrace}} (<font color="cyan">'''E. coli'''</font>) <br>
		+	{{Template:Checkbox Toggle Model2BackboneTrace}} (<font color="pink">'''Pseudomonas aeruginosa'''</font>)<br>
		+	{{Template:Checkbox Toggle Model3BackboneTrace}} (<font color="wheat">'''Yersinia enterocolitica'''</font>)<br>

Wayne Decatur: /* Aligned CsrA structures */

2011-03-14T15:48:07Z

Aligned CsrA structures

←Older revision		Revision as of 15:48, 14 March 2011
Line 103:		Line 103:
	{{Template:Checkbox Toggle Model2Cartoon}} (<font color="pink">'''Pseudomonas aeruginosa'''</font>)<br>		{{Template:Checkbox Toggle Model2Cartoon}} (<font color="pink">'''Pseudomonas aeruginosa'''</font>)<br>
	{{Template:Checkbox Toggle Model3Cartoon}} (<font color="wheat">'''Yersinia enterocolitica'''</font>)<br>		{{Template:Checkbox Toggle Model3Cartoon}} (<font color="wheat">'''Yersinia enterocolitica'''</font>)<br>
		+
		+

	Display <scene name='Sandbox_CsrA/Csrapdbs/5'>backbone trace of aligned CsrA structures</scene>.		Display <scene name='Sandbox_CsrA/Csrapdbs/5'>backbone trace of aligned CsrA structures</scene>.

Wayne Decatur: /* Aligned CsrA structures */

2011-03-14T15:46:57Z

Aligned CsrA structures

←Older revision		Revision as of 15:46, 14 March 2011
Line 89:		Line 89:


-	~~Display <scene name='Sandbox_CsrA/Csrapdbs/5'>backbone trace of aligned CsrA structures</scene>.~~	+


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	===Aligned Structures===		===Aligned Structures===
		+	Display <scene name='Sandbox_CsrA/Csrapdbs/6'>cartoon representation of aligned CsrA structures</scene>.
	{{Template:Checkbox Toggle Model1Cartoon}} (<font color="cyan">'''E. coli'''</font>) <br>		{{Template:Checkbox Toggle Model1Cartoon}} (<font color="cyan">'''E. coli'''</font>) <br>
	{{Template:Checkbox Toggle Model2Cartoon}} (<font color="pink">'''Pseudomonas aeruginosa'''</font>)<br>		{{Template:Checkbox Toggle Model2Cartoon}} (<font color="pink">'''Pseudomonas aeruginosa'''</font>)<br>
	{{Template:Checkbox Toggle Model3Cartoon}} (<font color="wheat">'''Yersinia enterocolitica'''</font>)<br>		{{Template:Checkbox Toggle Model3Cartoon}} (<font color="wheat">'''Yersinia enterocolitica'''</font>)<br>

-		+	Display <scene name='Sandbox_CsrA/Csrapdbs/5'>backbone trace of aligned CsrA structures</scene>.

Wayne Decatur: /* Aligned Structures */

2011-03-14T15:45:00Z

Aligned Structures

←Older revision		Revision as of 15:45, 14 March 2011
Line 99:		Line 99:

	===Aligned Structures===		===Aligned Structures===
-	{{Template:Checkbox Toggle Model1Cartoon}} ('''E. coli''') <br>	+	{{Template:Checkbox Toggle Model1Cartoon}} (<font color="cyan">'''E. coli'''</font>) <br>
-	{{Template:Checkbox Toggle Model2Cartoon}} ('''Pseudomonas aeruginosa''')<br>	+	{{Template:Checkbox Toggle Model2Cartoon}} (<font color="pink">'''Pseudomonas aeruginosa'''</font>)<br>
-	{{Template:Checkbox Toggle Model3Cartoon}} ('''Yersinia enterocolitica''')<br>	+	{{Template:Checkbox Toggle Model3Cartoon}} (<font color="wheat">'''Yersinia enterocolitica'''</font>)<br>


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-
-

	==Model of Vibrio CsrA==		==Model of Vibrio CsrA==

Wayne Decatur at 15:43, 14 March 2011

2011-03-14T15:43:04Z

←Older revision	Revision as of 15:43, 14 March 2011
Line 98:	Line 98:


	+	===Aligned Structures===
	+	{{Template:Checkbox Toggle Model1Cartoon}} ('''E. coli''') <br>
	+	{{Template:Checkbox Toggle Model2Cartoon}} ('''Pseudomonas aeruginosa''')<br>
	+	{{Template:Checkbox Toggle Model3Cartoon}} ('''Yersinia enterocolitica''')<br>

Wayne Decatur at 15:13, 14 March 2011

2011-03-14T15:13:23Z

Wayne Decatur at 15:11, 14 March 2011

2011-03-14T15:11:30Z

←Older revision		Revision as of 15:11, 14 March 2011
Line 130:		Line 130:
	The protein structure described in this section was determined [[theoretical models\|theoretically]], and hence should be interpreted with caution.</td></tr></table>		The protein structure described in this section was determined [[theoretical models\|theoretically]], and hence should be interpreted with caution.</td></tr></table>

-	<Structure load='Image:VfischeriCsrA2dimer.pdb' size='500' frame='true' align='right' caption='CsRA (E. ~~coli~~)' scene='Sandbox_CsrA/Vibriomodel/1' />	+	<Structure load='Image:VfischeriCsrA2dimer.pdb' size='500' frame='true' align='right' caption='CsRA (V. fischeri)' scene='Sandbox_CsrA/Vibriomodel/1' />

Wayne Decatur at 15:10, 14 March 2011

2011-03-14T15:10:03Z

←Older revision		Revision as of 15:10, 14 March 2011
Line 86:		Line 86:

	==Aligned CsrA structures==		==Aligned CsrA structures==
-	<Structure load='Image:1y00model1.pdb' size='500' frame='true' align='right' caption='CsRA structures aligned' scene='Sandbox_CsrA/Csrapdbs/3' />	+	<Structure load='Image:1y00model1.pdb' size='500' frame='true' align='right' caption='CsRA structures aligned' scene='Sandbox_CsrA/Csrapdbs/6' />


-	Display <scene name='Sandbox_CsrA/Csrapdbs/4'>backbone trace of aligned CsrA structures</scene>.	+	Display <scene name='Sandbox_CsrA/Csrapdbs/5'>backbone trace of aligned CsrA structures</scene>.


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	<table style="background-color:#ffffc0" cellpadding="8" width="95%" border="0"><tr><td valign='top'>[[Image:Note.gif\|left]] '''Theoretical Model:'''		<table style="background-color:#ffffc0" cellpadding="8" width="95%" border="0"><tr><td valign='top'>[[Image:Note.gif\|left]] '''Theoretical Model:'''
	The ''Vibrio'' structure described in this section was determined [[theoretical models\|theoretically]], and hence should be interpreted with caution.</td></tr></table>		The ''Vibrio'' structure described in this section was determined [[theoretical models\|theoretically]], and hence should be interpreted with caution.</td></tr></table>
-	<Structure load='1vpz' size='500' frame='true' align='right' caption='CsRA structures aligned' scene='Sandbox_CsrA/Structuresplusmodel/3' />	+	<Structure load='1vpz' size='500' frame='true' align='right' caption='CsRA structures aligned' scene='Sandbox_CsrA/Structuresplusmodel/5' />

-	Display <scene name='Sandbox_CsrA/Structuresplusmodel/4'>backbone trace of aligned structures and model</scene>.	+	Display <scene name='Sandbox_CsrA/Structuresplusmodel/6'>backbone trace of aligned structures and model</scene>.

←Older revision		Revision as of 15:13, 14 March 2011
Line 9:		Line 9:

	{{Template:Checkbox Toggle CsrRNABinding}}		{{Template:Checkbox Toggle CsrRNABinding}}
-	==Residues Highlighted by Alanine Scanning Mutation of CsrA<ref name="Alanine"> PMID:16923806 </ref>==	+	===Residues Highlighted by Alanine Scanning Mutation of CsrA<ref name="Alanine"> PMID:16923806 </ref>===
	{{Template:Checkbox Toggle Csr19}}<br>		{{Template:Checkbox Toggle Csr19}}<br>
	{{Template:Checkbox Toggle Csr28}}		{{Template:Checkbox Toggle Csr28}}
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	{{Template:Checkbox Toggle CsrRNABinding}}		{{Template:Checkbox Toggle CsrRNABinding}}
-	==Residues Highlighted by Alanine Scanning Mutation of CsrA<ref name="Alanine" />==	+	===Residues Highlighted by Alanine Scanning Mutation of CsrA<ref name="Alanine" />===
	{{Template:Checkbox Toggle Csr19}}<br>		{{Template:Checkbox Toggle Csr19}}<br>
	{{Template:Checkbox Toggle Csr28}}		{{Template:Checkbox Toggle Csr28}}
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	{{Template:Checkbox Toggle CsrRNABinding}}		{{Template:Checkbox Toggle CsrRNABinding}}
-	==Residues Highlighted by Alanine Scanning Mutation of CsrA<ref name="Alanine" />==	+	===Residues Highlighted by Alanine Scanning Mutation of CsrA<ref name="Alanine" />===
	{{Template:Checkbox Toggle Csr19}}<br>		{{Template:Checkbox Toggle Csr19}}<br>
	{{Template:Checkbox Toggle Csr28}}		{{Template:Checkbox Toggle Csr28}}
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	{{Template:Checkbox Toggle CsrRNABinding}}		{{Template:Checkbox Toggle CsrRNABinding}}
-	==Residues Highlighted by Alanine Scanning Mutation of CsrA<ref name="Alanine" />==	+	===Residues Highlighted by Alanine Scanning Mutation of CsrA<ref name="Alanine" />===
	{{Template:Checkbox Toggle Csr19}}<br>		{{Template:Checkbox Toggle Csr19}}<br>
	{{Template:Checkbox Toggle Csr28}}		{{Template:Checkbox Toggle Csr28}}
Line 182:		Line 182:
	{{Template:Checkbox Toggle CsrRNABinding}}		{{Template:Checkbox Toggle CsrRNABinding}}

-	==Residues Highlighted by Alanine Scanning Mutation of CsrA<ref name="Alanine" />==	+	===Residues Highlighted by Alanine Scanning Mutation of CsrA<ref name="Alanine" />===
	{{Template:Checkbox Toggle Csr19}}<br>		{{Template:Checkbox Toggle Csr19}}<br>
	{{Template:Checkbox Toggle Csr28}}		{{Template:Checkbox Toggle Csr28}}