Michal Harel at 10:19, 5 December 2023

2023-12-05T10:19:17Z

←Older revision		Revision as of 10:19, 5 December 2023
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	**[[2ieq]] – hcnSpi HR1+HR2 motifs <br />		**[[2ieq]] – hcnSpi HR1+HR2 motifs <br />
	**[[6cv0]] – Spi – infectious bronchitis coronavirus – Cryo EM <br />		**[[6cv0]] – Spi – infectious bronchitis coronavirus – Cryo EM <br />
-	**[[5fyn]] – Spi ectodomain - puumala virus - Cryo EM<br />
-	**[[5x59]], [[5x5c]], [[5x5f]], [[6q04]], [[6q05]], [[6q06]], [[6q07]], [[7yn0]] – McvSpi – MERS coronavirus virus – Cryo EM <br />
-	**[[7ymt]], [[7ymv]], [[7ymw]], [[7ymx]], [[7ymy]], [[7ymz]] – McvSpi (mutant) – Cryo EM <br />
-	**[[5x4r]], [[5x4s]] – McvSpi NTD – Cryo EM <br />
-	**[[5vyh]] – McvSpi NTD<br />
-	**[[4zpw]], [[4kqz]] – McvSpi RBD<br />
-	**[[4mod]] – McvSpi HR1+HR2 motifs <br />
	**[[2lcz]], [[2lcy]] - ZevSpi fusion loop 507-560 - Zaire ebolavirus - NMR<br />		**[[2lcz]], [[2lcy]] - ZevSpi fusion loop 507-560 - Zaire ebolavirus - NMR<br />
	**[[2m5f]], [[2mb1]] - ZevSpi fusion loop (mutant) - NMR<br />		**[[2m5f]], [[2mb1]] - ZevSpi fusion loop (mutant) - NMR<br />
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	**[[7lws]], [[7lwt]], [[7lwu]], [[7lwv]] – hscvSpi (mutant) – Cryo EM <br />		**[[7lws]], [[7lwt]], [[7lwu]], [[7lwv]] – hscvSpi (mutant) – Cryo EM <br />

		+	*Human MERS-covid spike protein
		+
		+	**[[5x59]], [[5x5c]], [[5x5f]], [[6q04]], [[6q05]], [[6q06]], [[6q07]], [[7yn0]] – McvSpi – Cryo EM <br />
		+	**[[7ymt]], [[7ymv]], [[7ymw]], [[7ymx]], [[7ymy]], [[7ymz]] – McvSpi (mutant) – Cryo EM <br />
		+	**[[5x4r]], [[5x4s]] – McvSpi NTD – Cryo EM <br />
		+	**[[5vyh]] – McvSpi NTD<br />
		+	**[[4zpw]], [[4kqz]] – McvSpi RBD<br />
		+	**[[4mod]] – McvSpi HR1+HR2 motifs <br />

	* Human virus spike protein complex with antibody		* Human virus spike protein complex with antibody
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	**[[6war]] – McvSpi RBD + VH<br />		**[[6war]] – McvSpi RBD + VH<br />
	**[[6pci]], [[6qd8]] – ZevSpi + antibody – Cryo EM <br />		**[[6pci]], [[6qd8]] – ZevSpi + antibody – Cryo EM <br />
-

	* Human virus spike protein complex with ACE2		* Human virus spike protein complex with ACE2

Michal Harel: New page: == 3D Structures of spike protein == Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}} {{#tree:id=OrganizedByTopic|openlevels=0| * Human virus spike protein; D...

2023-12-04T10:12:08Z

New page: == 3D Structures of spike protein == Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}} {{#tree:id=OrganizedByTopic|openlevels=0| * Human virus spike protein; D...

New page

== 3D Structures of spike protein ==

Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}}
{{#tree:id=OrganizedByTopic|openlevels=0|

* Human virus spike protein; Domains – N terminal (NTD) 1-303; Receptor Binding Domain (RBD) 318-510; HR1 910-1054; HR2 1162-1286; transmembrane (TM) 1217-1237

**[[5wrg]], [[5xlr]], [[6acc]], [[6acd]], [[6x2b]], [[6xr8]], [[6xra]], [[6zb4]], [[6zb5]], [[6zge]], [[6zgg]], [[6zgh]], [[6zgi]], [[7dzw]], [[7fb0]], [[7fb1]], [[7fb3]], [[7fb4]], [[7m0j]], [[7zh1]], [[7zh2]], [[7zh5]], [[8d55]], [[8d56]], [[8d5a]], [[8fez]], [[8h15]], [[8h16]], [[8h3d]] – hscvSpi – human SARS-CoV – Cryo EM 
**[[6crv]], [[6crw]], [[6crx]], [[6crz]], [[6cs0]], [[6cs1]], [[6x29]], [[6x2a]], [[6x2c]], [[6zox]], [[6zoy]], [[6zoz]], [[6zp0]], [[6zp1]], [[6zp2]], [[7bnm]], [[7cn9]], [[7kdg]], [[7kdh]], [[7kdi]], [[7kdj]], [[7kdk]], [[7kdl]], [[7ke4]], [[7ke6]], [[7ke7]], [[7ke8]], [[7ke9]], [[7kea]], [[7keb]], [[7kec]], [[7krq]], [[7krr]], [[7krs]], [[7lwi]], [[7lwj]], [[7lwk]], [[7lwl]], [[7lwm]], [[7lwn]], [[7lwo]], [[7lwp]], [[[7lwq]], [[7lww]], [[7mjg]], [[7od3]], [[7odl]], [[7sxr]], [[7sxs]], [[7sxt]], [[7sxu]], [[7sxv]], [[7sxw]], [[7tp1]], [[7vhn]], [[7xtz]], [[7xu0]], [[7xu1]], [[7xu2]], [[7xu3]], [[7xu4]], [[7xu5]], [[7xu6]], [[8csa]], [[8h0x]], [[8h0y]], [[8h0z]], [[8h10]], [[8h11]], [[8h12]], [[8h13]], [[8h14]], [[8p99]], [[8p9y]], [[8t21]] – hscvSpi (mutant) – Cryo EM 
**[[1wnc]] – hscvSpi HR1 motif 
**[[7r95]] – hscvSpi HR1- NMR 
**[[6lvn]] – hscvSpi HR2 
**[[2fxp]] – hscvSpi HR2 motif 1140-1193 - NMR 
**[[7owx]] – hscvSpi stalk 1177-1203 
**[[2ghv]] – hscvSpi RBD 
**[[7tpk]] – hscvSpi RBD (mutant) – Cryo EM 
**[[5xjk]] – hscvSpi 758-821 - NMR 
**[[1wyy]] – hscvSpi 885-1189 
**[[1zv7]], [[1zv8]], [[1zva]], [[1zvb]] – hscvSpi 1150-1193 
**[[8fdw]], [[7e9t]] – hscvSpi 686-1273 – Cryo EM 
**[[7lc8]] – hscvSpi TM - NMR 
**[[7wxz]], [[7y9n]], [[7zr2]] – hscvSpi HR1 + HR2 
**[[7rzq]], [[7rzs]], [[8czi]] – hscvSpi HR1 + HR2 – Cryo EM 
**[[7rzr]], [[7rzt]], [[7rzu]], [[7rzv]], [[8fa1]] – hscvSpi HR1 (mutant) + HR2 – Cryo EM 
**[[8fa2]] – hscvSpi HR1 + 42G – Cryo EM 
**[[6u7h]] – hcv229Spi – human coronavirus 229E – Cryo EM 
**[[5zuv]], [[5zvm]] – hcv229Spi HR1 motif 785-873 
**[[5yl9]], [[5zhy]] – hcv229Spi HR1+HR2 motifs 
**[[5x58]], [[5x5b]] – Spi – human SARS coronavirus BJ01 – Cryo EM 
**[[6vsb]], [[6vxx]], [[6vyb]] – hsc2Spi – human SARS coronavirus 2 – Cryo EM 
**[[6lxt]] – hscSpi HR1+HR2 motifs 
**[[5szs]] – hcnSpi – human coronavirus NL63 - Cryo EM 
**[[2ieq]] – hcnSpi HR1+HR2 motifs 
**[[6cv0]] – Spi – infectious bronchitis coronavirus – Cryo EM 
**[[5fyn]] – Spi ectodomain - puumala virus - Cryo EM 
**[[5x59]], [[5x5c]], [[5x5f]], [[6q04]], [[6q05]], [[6q06]], [[6q07]], [[7yn0]] – McvSpi – MERS coronavirus virus – Cryo EM 
**[[7ymt]], [[7ymv]], [[7ymw]], [[7ymx]], [[7ymy]], [[7ymz]] – McvSpi (mutant) – Cryo EM 
**[[5x4r]], [[5x4s]] – McvSpi NTD – Cryo EM 
**[[5vyh]] – McvSpi NTD 
**[[4zpw]], [[4kqz]] – McvSpi RBD 
**[[4mod]] – McvSpi HR1+HR2 motifs 
**[[2lcz]], [[2lcy]] - ZevSpi fusion loop 507-560 - Zaire ebolavirus - NMR 
**[[2m5f]], [[2mb1]] - ZevSpi fusion loop (mutant) - NMR 

* Human virus spike protein alpha

**[[8dli]] – hscvSpi – Cryo EM 

* Human virus spike protein beta

**[[7vx1]], [[7wev]], [[8dll]] – hscvSpi – Cryo EM 
**[[5gnb]], [[5kwb]] – hscvSpi RBD 

* Human virus spike protein gamma

**[[7sbp]], [[7sbs]], [[8dlo]] – hscvSpi – Cryo EM 
**[[7sbt]] – hscvSpi (mutant) – Cryo EM 

* Human virus spike protein delta

**[[7sbk]], [[7sbl]], [[7tey]], [[7w94]] – hscvSpi – Cryo EM 
**[[7sbo]], [[7tl1]], [[7tl9]], [[7tou]], [[7tov]], [[7tox]], [[7toy]], [[7toz]], [[[7tp0]], [[7tp2]], [[7tp7]], [[7tp8]], [[7tp9]], [[7tpa]], [[7tpc]], [[7tpe]], [[7tpf]], [[7tph]], [[7tpl]], [[7vhh]], [[7w92]] – hscvSpi (mutant) – Cryo EM 

* Human virus spike protein epsilon

**[[8dlt]] – hscvSpi – Cryo EM 

* Human virus spike protein kappa

**[[7sbq]], [[7sbr]], [[7tf2]], [[7tf5]], [[7vxe]], [[7vxi]] – hscvSpi – Cryo EM 
**[[7tf3]] – hscvSpi (mutant) – Cryo EM 
**[[7tf1]], [[7tf4]] – hscvSpi RBD – Cryo EM 

* Human virus spike protein omicron

**[[7t9j]], [[7tge]], [[8dm1]] – hscvSpi – Cryo EM 
**[[7tei]] – hscvSpi (muant) – Cryo EM 
**[[7tf8]], [[7ub0]], [[7ub5]], [[7ub6]], [[7x1m]], [[7y9s]] – hscvSpi (mutant) – Cryo EM 
**[[8dm2]] – hscvSpi NTD – Cryo EM 
**[[7uad]], [[7xiz]] – hscvSpi RBD – Cryo EM 

*South African spike protein

**[[7lyk]], [[7lyl]], [[7lym], [[7lyn]], [[7lyo]], [[7lyp]], [[7lyq]] – hscvSpi (mutant) – Cryo EM 
**[[7fjn]], [[7fjo]] – hscvSpi (mutant) + antibody– Cryo EM 

*UK spike protein

**[[7lws]], [[7lwt]], [[7lwu]], [[7lwv]] – hscvSpi (mutant) – Cryo EM 

* Human virus spike protein complex with antibody

**[[6nb6]], [[6nb7]], [[7cwl]], [[7cwm]], [[7cwn]], [[7cwt]], [[7dzx]], [[7dzy]], [[7k9k]], [[7kxj]], [[7kxk]], [[7l3n]], [[7ljr]], [[7q0a]], [[7rbu]], [[7swn]], [[7wef]], [[7wp1]], [[7wp6]], [[7x6a]], [[7zjl]], [[8d0z]], [[8dtk]], [[8gsb]], [[8iv8]], [[8iva]] – hscvSpi + antibody - Cryo EM 
**[[7mjj], [[7mjl]], [[8gnh]]] – hscvSpi (mutant) + antibody - Cryo EM 
**[[2dd8]], [[2ghw]], [[3bgf]], [[6w41]], [[6xc2]], [[6xc3]], [[6xc4]], [[6xc7]], [[6xe1]], [[6xkp]], [[6xkq]], [[6zer]], [[7b3o]], [[7bwj]], [[7bz5]], [[7c01]], [[7cdi]], [[7cdj]], [[7ch4]], [[7ch5]], [[7chb]], [[7chc]], [[7che]], [[7chf]], [[7cho]], [[7chp]], [[7chs]], [[7cjf]], [[7d6i]], [[7djz]], [[7dk0]], [[7dk2]], [[7dpm]], [[7e3o]], [[7e5o]], [[7e5y]], [[7e7y]], [[7e86]], [[7e88]], [[7eam]], [[7ean]], [[7ejy]], [[7f6z]], [[7f7e]], [[7fcp]], [[7fcq]], [[7fjs]], [[7jmo]], [[7jmp]], [[7jmw]], [[7jx3]], [[7k9z]], [[7kmg]], [[7kn3]], [[7kn4]], [[7l5b]], [[7l7d]], [[7l7e]], [[7lm8]], [[7lm9]], [[7lop]], [[7lq7]], [[7m3i]], [[7m6d]], [[7m7w]], [[7mf1]], [[7msq]], [[7mzf]], [[7mzg]], [[7mzh]], [[7mzi]], [[7mzj]], [[7mzk]], [[7mzl]], [[7mzm]], [[7mzn]], [[7n3i]], [[7n4i]], [[7n4j]], [[7n4l]], [[7n4m]], [[7np1]], [[7nx6]], [[7nx8]], [[7nxa]], [[7nxb]], [[7or9]], [[7orb]], [[7pqy]], ]]7pqz]], [[7pr0]], [[7qez]], [[7qf0]], [[7qf1]], [[7r6w]], [[7r6x]], [[7r8l]], [[7rks]], [[7rku]], [[7s0b]], [[7s4s]], [[7s5p]], [[7s5q]], [[7s5r]], [[7s83]], [[7sbu]], [[7sd5]], [[7si2]], [[7t7b]], [[7te1]], [[7tp3]], [[7tp4]], [[7u2d]], [[7u2e]], [[7u8e]], [[7ul0]], [[7ul1]], [[7uzc]], [[7uzd]], [[7vmu]], [[7vn9]], [[7nyr]], [[7vzt]], [[7wbz]], [[7wn2]], [[7wnb]], [[7wqv]], [[7wph]], [[7wue]], [[7wvl]], [[7x2h]], [[7x7o]], [[7xei]], [[7xnf]], [[7xs8]], [[7xsa]], [[7xsc]], [[7y0c]], [[7y0v]], [[7yck]], [[7ycl]], [[7ycn]], [[7yh6]], [[7z0x]], [[7z0y]], [[8be1]], [[8cwi]], [[8cwk]], [[8dcc]], [[8dnn]], [[8dpz]], [[8dw9]], [[8dwa]], [[8dxt]], [[8dxu]], [[8edf]], [[8el2]], [[8eoo]], [[8f0i]], [[8gb6]], [[8hes]], [[8hn6]], [[8hn7]], [[8gb5]], [[8gb7]], [[8gb8]], [[8gf2]], [[8gx9]], [[8smt]] – hscvSpi RBD + antibody 
**[[6xdg]], [[6zdg]], [[6zfo]], [[7cah]], [[7cwo]], [[7e23]], [[7e39]], [[7e3b]], [[7e3c]], [[7k9i]], [[7m42]], [[7mkm]], [[7mlz]], [[7rr0]], [[7swo]], [[7swp]], [[7t01]], [[7tbf]], [[7tc9]], [[7the]], [[7v27]], [[7whz]], [[7wo7]], [[7wp1]], [[7wp2]], [[7wp8]], [[7wr8]], [[7wr9]], [[7wrj]], [[7wsc]], [[7x7t]], [[7x7v]], [[7xxl]], [[7y7k]], [[7yr0]], [[8a96]], [[8dw2]], [[8gjn]], [[8h7l]], [[8hed]], [[8idn]], [[8iv4]], [[8iv5]], [[8ix3]], [[8pq2]] – hscvSpi RBD + antibody – Cryo EM 
**[[7e8m]], [[7ejz]], [[7ek0]], [[7f6y]], [[7fbk]], [[7nx7]], [[7nx9]], [[7ora]] – hscvSpi RBD (mutant) + antibody 
**[[7spo]], [[7spp]] – hscvSpi RBD + antibody-like 
**[[8dlz]] – hscvSpi + VH – Cryo EM 
**[[7olz]], [[8sk5]] – hscvSpi RBD + VH 
**[[7mjh]], [[7mji]] – hscvSpi RBD (mutant) + VH – Cryo EM 
**[[8dm0]] – hscvSpi NTD + VH – Cryo EM 
**[[7e7x]], [[7ly3]] – hscvSpi NTD + antibody 
**[[7m8j]], [[7sww]] – hscvSpi NTD + antibody – Cryo EM 
**[[7e8f]] – hscvSpi NTD+RBD + antibody – Cryo EM 
**[[6zcz]], [[7kn6]], [[7kn7]], [[7x2k]], [[8cwv]], [[8elo]], [[8elp]], [[8elq]] – hscvSpi RBD + antibody + nanobody 
**[[7y0o]] – hscvSpi RBD + antibody + nanobody – Cryo EM 
**[[7dx4]] – hscvSpi RBD + antibody + ACE2 
**[[8dw3]] – hscvSpi RBD + antibody + darpin – Cryo EM 
**[[6zxn]], [[7lrs]], [[7vq0]], [[7z1a]], [[8cxq]], [[8cy6]], [[8cy7]], [[8cy9]], [[8cya]], [[8cyb]], [[8cyc]], [[8cyd]], [[8eyg]], [[8eyh]], [[8f4p]] – hscvSpi + nanobody - Cryo EM 
**[[7b14]], [[7b17]], [[7mdw]], [[7me7]], [[7mej]], [[7n9a]], [[7nll]], [[7xrp]], [[8cyj]] – hscvSpi RBD + nanobody - Cryo EM 
**[[7fat]], [[7fau]], [[7fbj]], [[7fh0]], [[7kgk]], [[7klw]], [[7km5]], [[7kn5]], [[7lx5]], [[7mfu]], [[7nkt]], [[7oao]], [[7oap]], [[7oaq]], [[7oau]], [[7oay]], [[7rby]], [[7w1s]], [[7wd1]], [[7wd2]], [[7x2j]], [[7x2l]], [[7x2m]], [[7z1b]], [[7z1c]], [[7z1d]], [[7z1e]], [[8cwu]], [[8h5t]], [[8h91]], [[8hr2]] – hscvSpi RBD + nanobody 
**[[7jvb]], [[8cxn]], [[8h5u]] – hscvSpi + nanobody 
**[[7a25]], [[7a29]], [[7n0g]], [[7n0h]], [[7p77]], [[7p78]], [[7p79]], [[7p7a]], [[7p7b]] – hscvSpi + sybody - Cryo EM 
**[[7c8v]], [[7c8w]], [[7can]], [[7d2z]], [[7d30]] – hscvSpi RBD + sybody 
**[[7rxd]] – hscvSpi RBD + legobody - Cryo EM 
**[[7yco]] – hscvSpi RBD + repebody 
**[[8h6f]] – hscvSpi + repebody – Cryo EM 
**[[7cyv]], [[7deo]], [[7det]], [[7deu]], [[7vnb]], [[8bec]], [[8bg1]], [[8bg2]], [[8bg3]], [[8bg4]], [[8bg5]], [[8dce]], [[8juh]] – hscvSpi RBD + scFV 
**[[7zce]] – hscvSpi + scFV – Cryo EM 
**[[5w41]] – hsc2Spi RBD + antibody 
**[[7vng]] – hcv229Spi RBD + antibody 
**[[6pz8]], [[5w9h]], [[5w9i]], [[5w9j]], [[5w9k]], [[5w9l]], [[5w9m]], [[5w9n]], [[5w9o]], [[5w9p]] – McvSpi + antibody – Cryo EM 
**[[6j11]] – McvSpi N-terminal + antibody 
**[[5yy5]], [[5zxv]], [[4zpt]], [[4zpv]], [[5do2]], [[6c6y]], [[6c6z]], [[4xak]], [[5gmq]] – McvSpi RBD + antibody 
**[[6war]] – McvSpi RBD + VH 
**[[6pci]], [[6qd8]] – ZevSpi + antibody – Cryo EM 

* Human virus spike protein complex with ACE2

**[[6lzg]], [[7dmu]], [[7fc3]], [[7fc5]], [[7fc6]], [[7lo4]], [[7rpv]], [[7w6u]], [[7xa7]] – hscvSpi RBD + ACE2 
**[[7bh9]], [[7c8d]], [[7ddo]], [[7ddp]], [[7fdg]], [[7fdh]], [[7fdi]], [[7fdk]], [[7nxc]], [[7w8s]], [[7wse]], [[7wsf]], [[7wsg]], [[7zdq]], [[8hg0]], [[8t23]], [[8t25]] – hscvSpi RBD + ACE2 – Cryo EM 
**[[7f5r]], [[7sn0]] – hscvSpi RBD (mutant) + ACE2 
**[[7ydi]], [[8fxb]], [[8fxc]] – hscvSpi RBD + ACE2 + antibody – Cryo EM 
**[[7l0n]] – hscvSpi RBD + ACE2 + antibody 
**[[7ekh]] – hscvSpi RBD (mutant) + ACE2 
**[[7eke]], [[7mjn]], [[7p19]], [[7sxx]], [[7sxy]], [[7sxz]], [[7sy0]], [[7sy2]], [[7sy4]], [[7sy8]], [[8t20]], [[7wa1]] – hscvSpi RBD (mutant) + ACE2 – Cryo EM 
**[[6acg]], [[6acj]], [[6ack]], [[6cs2]], [[7wsh]], [[8hfz]] – hscvSpi + ACE2 - Cryo EM 
**[[7mjk]], [[7mjm]], [[7sy1]], [[7sy3]], [[7sy5]], [[7sy6]], [[7sy7]], [[8t22]], [[8taz]] – hscvSpi (mutant) + ACE2 - Cryo EM 
**[[7y75]], [[7y76]] – hscvSpi + ACE2 + SIT1 - Cryo EM 
**[[2ajf]] – hscvSpi RBD + ACEH 
**[[6m0j]], [[3d0g]], [[3d0h]], [[3d0i]], [[3sci]], [[3scj]], [[3sck]], [[3scl]], [[7e3j]] – hsc2Spi RBD + ACE2 
**[[3kbh]] – hcnSpi RBD + ACE2 

* Human virus spike protein complex with other proteins

**[[7b62]] – hscvSpi NTD + biliverdin 
**[[7x7n]] – hscvSpi + peptide - Cryo EM 
**[[7l4z]], [[8aaa]] – hscvSpi RBD + peptide - 
**[[8h3e]] – hscvSpi + modulator - Cryo EM 
**[[8j1q]], [[8j26]] – hscvSpi RBD + DNA - Cryo EM 
**[[7c53]] – hscvSpi HR1 + EK1 
**[[6u7f]], [[6u7g]], [[6u7e]] – hcv229Spi RBD + aminopeptidase 
**[[4kr0]] – McvSpi RBD + CD26 
**[[4l72]] – McvSpi RBD + DPP4 
**[[5zvk]] – McvSpi HR1 motif 984-1062 + peptide inhibitor 
**[[6uye]] – ZevSpi + SGP – Cryo EM 

* Human virus spike protein alpha complex

**[[7ytn]] – hscvSpi + antibody 
**[[8gz5]] – hsc2Spi RBD + VHH 
**[[8dlj]] – hsc2Spi + ACE2 – Cryo EM 
**[[7ekf]] – hsc2Spi RBD + ACE2 
**[[8dlk]] – hsc2Spi RBD + ACE2 – Cryo EM 

* Human virus spike protein beta complex

**[[7pry]], [[7prz]], [[7xeg]] – hscvSpi + antibody 
**[[7q0i]] – hscvSpi NTD + antibody 
**[[7fjc]], [[7ps0]], [[7ps1]], [[7ps2]], [[7ps4]], [[7ps5]], [[7ps6]], [[7ps7]], [[7q0g]], [[7q0h]], [[7x63]], [[7xil]], [[8bsf]] – hscvSpi RBD + antibody 
**[[8df5]] – hscvSpi RBD + antibody + ACE2 
**[[8di5]] – hscvSpi RBD + VH – Cryo EM 
**[[7vxd]], [[7vxf]], [[7vxk]], [[7vxm]], [[8dlm]] – hscvSpi + ACE2 – Cryo EM 
**[[8dln]] – hscvSpi RBD + ACE2 – Cryo EM 
**[[7ekg]] – hscvSpi RBD + ACE2 

* Human virus spike protein gamma complex

**[[8dlr]], [[8dls]] – hscvSpi NTD + antibody – Cryo EM 
**[[8dlp]] – hscvSpi + ACE2 – Cryo EM 
**[[7ekc]], [[8dlq]] – hscvSpi RBD + ACE2 – Cryo EM 
**[[7wnm]] – hscvSpi RBD + ACE2 

* Human virus spike protein delta complex

**[[7urq]], [[7urs]], [[8bbn]], [[8i5h]], [[8i5i]] – hscvSpi RBD + antibody 
**[[7w9f]], [[7xdl]], [[7xdk]] – hscvSpi + antibody – Cryo EM 
**[[7wp0]], [[7wro]], [[7wry]], [[7x7u]], [[8bcz]] – hscvSpi RBD + antibody – Cryo EM 
**[[7x7d]], [[7x7e]] – hscvSpi RBD + nanobody 
**[[8c3v]] – hscvSpi RBD + nanobody + antibody 
**[[7tex]] – hsc2Spi + ACE2 – Cryo EM 
**[[7vpp]], [[7w9i]], [[7wbq]] – hsc2Spi RBD + ACE2 
**[[7tew]] – hsc2Spi RBD + ACE2 – Cryo EM 

* Human virus spike protein epsilon complex

**[[8dlx]] – hscvSpi + VH – Cryo EM 
**[[8dly]] – hscvSpi NTD + VH – Cryo EM 
**[[8dlw]] – hscvSpi + antibody - Cryo EM 
**[[8dlu]] – hscvSpi + ACE2 – Cryo EM 
**[[8dlv]] – hscvSpi RBD + ACE2 – Cryo EM 

* Human virus spike protein kappa complex

**[[7tf0]], [[7vx9]], [[7vxa]], [[7vxb]], [[7vxc]] – hscvSpi + ACE2 – Cryo EM 
**[[7tez]] – hscvSpi RBD + ACE2 – Cryo EM 

* Human virus spike protein omicron complex with antibody

**[[7we7]], [[7we8]], [[7we9]], [[7wea]], [[7wec]], [[7wi0]], [[7wk4]], [[7wk8]], [[7wka]], [[7ws6]], [[7xco]], [[7xdb]], [[8dm3]], [[8gzz]], [[8h3m]], [[8hc7]], [[8hc8]] – hscvSpi + antibody - Cryo EM 
**[[7web]], [[7wed]], [[7wef]], [[7wk0]], [[7wlc]], [[7woc]], [[7wog], [[7won]], [[7wop]], [[7wrl]], [[7wrz]], [[7ws2]], [[7ws7]], [[7wsa]], [[7wtg]], [[7wth]], [[7wtj]], [[7xck]], [[7yd1]], [[8hc6]] – hscvSpi RBD + antibody - Cryo EM 
**[[7x66]], [[7xik]], [[7y0w]], [[7zf3]], [[7zf5]], [[7zf8]], [[7zfa]], [[7zfd]], [[8sph]] – hscvSpi RBD + antibody 
**[[7zf4]], [[7zfb]], [[7zfc]], [[7zfe]], [[7zxu]], [[8bh5]] – hscvSpi RBD + antibody + nanobody 
**[[8gpy]] – hscvSpi RBD + scFv 
**[[7zf9]], [[8e1g]] – hscvSpi + antibody 
**[[8h3n]] – hscvSpi (mutant) + antibody – Cryo EM 
**[[8dm4]] – hscvSpi NTD + antibody – Cryo EM 

* Human virus spike protein omicron complex with ACE2

**[[7t9k]], [[7wbl]], [[7wk5]], [[7wk6]], [[7wrh]], [[7wvp]], [[7wvq]], [[7xch]], [[7y9z]], [[7ya0]], [[7yhw]], [[8dm5]], [[8dm7]], [[8dm9]], [[8hfx]], [[8ify]], [[8ifz]] – hscvSpi + ACE2 - Cryo EM 
**[[7t9l]], [[7yj3]], [[7yvu]], [[8dm6]], [[8dm8]], [[8gry]], [[8h06]], [[8hfy]] – hscvSpi RBD + ACE2 - Cryo EM 
**[[7xcp]] – hscvSpi + ACE2 + antibody - Cryo EM 
**[[7wsk]], [[7xb0]], [[7ya1]] – hscvSpi + ACE2 
**[[7u0n]], [[7ufk]], [[7ufl]], [[7wbp]], [[7xaz]], [[7xb1]], [[7xby]], [[7xwa]], [[7zf7]], [[8asy]], [[8dma]], [[8h5c]], [[8if2]], [[8spi]] – hscvSpi RBD + ACE2 
**[[7tn0]] – hscvSpi RBD + ACE2 + antibody 

* Human virus spike protein OC43 complex

**[[7sb5]] – hscvSpi + antibody - Cryo EM 
**[[7sb3]], [[7sbv]], [[7sbw]], [[7sbx]], [[7sby]] – hscvSpi RBD + antibody - Cryo EM 
**[[7sb4]] – hscvSpi RBD + ACE2 - Cryo EM 

* Non-human virus spike protein

**[[4h14]] – Spi lectin domain 7-290 - bovine coronavirus 
**[[6b7n]], [[6bfu]] – pdcvSpi – porcine delta coronavirus – Cryo EM 
**[[6u7k]], [[6vv5]] – Spi – porcine epidemic diarrhea virus – Cryo EM 
**[[6qfy]] – Spi lectin domain 15-300 - porcine hemagglutinating encephalomyelitis virus >
**[[6jhy]] – Spi N-terminal – camel coronavirus HKU23 
**[[6jx7]] – Spi – feline infectious peritonitis virus – Cryo EM 
**[[1wdf]], [[1wdg]] – mhvSpi – murine hepatitis virus 
**[[3jcl]] – mhvSpi – Cryo EM 
**[[6b3o]] – Spi residues 718-1252 - murine coronavirus - Cryo EM 
**[[6zgf]] – bcvSpi - bat coronavirus – Cryo EM 
**[[5gyq]] – bcvSpi RBD 
**[[5xgr]] – bcvSpi C-terminal 
**[[7ttm]], [[7tty]], [[8j5j]] – bcvSpi RBD + antibody 
**[[7p8i]], [[7p8j]] – bcvSpi RBD + ACE2 
**[[7xsw]] – Spi RBD + antibody - pangolin 
**[[6orj]] – Spi - Pseudomonas virus phikz164i 
**[[2vvd]], [[2vve]] – Spi RBD - Pseudoalteromonas phage PM2 
**[[3aqj]] – Spi 87-211 - Enterobacteria phage P2 
**[8a05j]] – Spi penton domain 1-91 - Flavobacteria phage FL-1 

* Non-human virus spike protein complex

**[[4fsc]] – Spi RBD + aminopeptidase – porcine respiratory coronavirus 
**[[7vpq]] – pdcvSpi RBD + aminopeptidase 
**[[6vsj]] – mcvSpi + MHV-R - Cryo EM 
**[[4qzv]] – bcvSpi RBD + DPP4 
**[[4f2m]] – Spi 481-650 + antibody – gastroenteritis virus 
}}

[[Category:Topic Page]]

Spike protein 3D structures - Revision history

Michal Harel at 10:19, 5 December 2023

Michal Harel: New page: == 3D Structures of spike protein == Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}} {{#tree:id=OrganizedByTopic|openlevels=0| * Human virus spike protein; D...