Template:ConSurf - Revision history

Jaime Prilusky at 07:55, 13 October 2016

2016-10-13T07:55:10Z

←Older revision		Revision as of 07:55, 13 October 2016
Line 1:		Line 1:
	<noinclude>		<noinclude>
	== HOW TO USE THIS TEMPLATE: ==		== HOW TO USE THIS TEMPLATE: ==
-	It '''cannot''' be used in the regular way, as <code><nowiki>{{ConSurf}}</nowiki></code>
-
	You must insert it as <code><nowiki>{{subst:ConSurf\|1stp\|st}}</nowiki></code>		You must insert it as <code><nowiki>{{subst:ConSurf\|1stp\|st}}</nowiki></code>

-	Where the 2 parameters, <code>st</code> and <code>~~1stp~~</code>, need to be adjusted to your case:	+	Where the 2 parameters, <code>1stp</code> and <code>st</code>, need to be adjusted to your case:
	* 1st parameter is the PDB ID of the model		* 1st parameter is the PDB ID of the model
-	* 2nd parameter is the 2nd and 3rd characters of the ID	+	* 2nd parameter is the 2nd and 3rd characters of the PDB ID

	The result will look like below and will be made a hard-coded content of the page (i.e. the template wikitext is removed and the result is inserted into the page source).		The result will look like below and will be made a hard-coded content of the page (i.e. the template wikitext is removed and the result is inserted into the page source).

Angel Herraez: creating a template that inserts ConSurf div - reverse order of parameters

2016-10-13T07:49:31Z

creating a template that inserts ConSurf div - reverse order of parameters

←Older revision		Revision as of 07:49, 13 October 2016
Line 3:		Line 3:
	It '''cannot''' be used in the regular way, as <code><nowiki>{{ConSurf}}</nowiki></code>		It '''cannot''' be used in the regular way, as <code><nowiki>{{ConSurf}}</nowiki></code>

-	You must insert it as <code><nowiki>{{subst:ConSurf~~\|st~~\|1stp}}</nowiki></code>	+	You must insert it as <code><nowiki>{{subst:ConSurf\|1stp\|st}}</nowiki></code>

	Where the 2 parameters, <code>st</code> and <code>1stp</code>, need to be adjusted to your case:		Where the 2 parameters, <code>st</code> and <code>1stp</code>, need to be adjusted to your case:
-	* 1st parameter is the ~~folder where ....~~	+	* 1st parameter is the PDB ID of the model
-	* 2nd parameter is the ~~PDB ID~~ of the ~~model~~	+	* 2nd parameter is the 2nd and 3rd characters of the ID

	The result will look like below and will be made a hard-coded content of the page (i.e. the template wikitext is removed and the result is inserted into the page source).		The result will look like below and will be made a hard-coded content of the page (i.e. the template wikitext is removed and the result is inserted into the page source).
-
-	<!--script /wiki/ConSurf/{{{1}}}/{{{2}}}_consurf.spt;-->

	</noinclude>		</noinclude>
Line 24:		Line 22:
	select protein; define ~consurf_to_do selected;		select protein; define ~consurf_to_do selected;
	consurf_initial_scene = true;		consurf_initial_scene = true;
-	script /wiki/ConSurf/~~{{#invoke:String\|sub\|~~{{{2}~~}}\|1\|2~~}}/{{{2}}}_consurf.spt;	+	script /wiki/ConSurf/{{{2}}}/{{{1}}}_consurf.spt;
	</scriptWhenChecked>		</scriptWhenChecked>
	<scriptWhenUnchecked>		<scriptWhenUnchecked>
Line 34:		Line 32:
	You may read the [[Conservation%2C_Evolutionary\|explanation]]		You may read the [[Conservation%2C_Evolutionary\|explanation]]
	of the method and the full data available from		of the method and the full data available from
-	[http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID={{{2}}} ConSurf].	+	[http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID={{{1}}} ConSurf].
	<!-- end of content inserted by the ConSurf template -->		<!-- end of content inserted by the ConSurf template -->

Angel Herraez: creating a template that inserts ConSurf div

2016-10-13T07:42:08Z

creating a template that inserts ConSurf div

←Older revision		Revision as of 07:42, 13 October 2016
Line 10:		Line 10:

	The result will look like below and will be made a hard-coded content of the page (i.e. the template wikitext is removed and the result is inserted into the page source).		The result will look like below and will be made a hard-coded content of the page (i.e. the template wikitext is removed and the result is inserted into the page source).
		+
		+	<!--script /wiki/ConSurf/{{{1}}}/{{{2}}}_consurf.spt;-->
		+
	</noinclude>		</noinclude>

Line 21:		Line 24:
	select protein; define ~consurf_to_do selected;		select protein; define ~consurf_to_do selected;
	consurf_initial_scene = true;		consurf_initial_scene = true;
-	script /wiki/ConSurf/{{{1}}}/{{{2}}}_consurf.spt;	+	script /wiki/ConSurf/{{#invoke:String\|sub\|{{{2}}}\|1\|2}}/{{{2}}}_consurf.spt;
	</scriptWhenChecked>		</scriptWhenChecked>
	<scriptWhenUnchecked>		<scriptWhenUnchecked>

Angel Herraez: Undo revision 2680471 by Angel Herraez (Talk)

2016-10-11T22:14:30Z

Undo revision 2680471 by Angel Herraez (Talk)

←Older revision		Revision as of 22:14, 11 October 2016
Line 18:		Line 18:
	<jmol>		<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<target>jmolApplet1
-	</target>
	<scriptWhenChecked>		<scriptWhenChecked>
	select protein; define ~consurf_to_do selected;		select protein; define ~consurf_to_do selected;

Angel Herraez: Undo revision 2680470 by Angel Herraez (Talk)

2016-10-11T22:12:27Z

Undo revision 2680470 by Angel Herraez (Talk)

←Older revision		Revision as of 22:12, 11 October 2016
Line 18:		Line 18:
	<jmol>		<jmol>
	<jmolCheckbox>		<jmolCheckbox>
		+	<target>jmolApplet1
		+	</target>
	<scriptWhenChecked>		<scriptWhenChecked>
	select protein; define ~consurf_to_do selected;		select protein; define ~consurf_to_do selected;

Angel Herraez at 22:11, 11 October 2016

2016-10-11T22:11:42Z

←Older revision		Revision as of 22:11, 11 October 2016
Line 18:		Line 18:
	<jmol>		<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<target>jmolApplet1
-	</target>
	<scriptWhenChecked>		<scriptWhenChecked>
	select protein; define ~consurf_to_do selected;		select protein; define ~consurf_to_do selected;

Angel Herraez: creating a template that inserts ConSurf div

2016-10-11T22:09:13Z

creating a template that inserts ConSurf div

←Older revision		Revision as of 22:09, 11 October 2016
Line 12:		Line 12:
	</noinclude>		</noinclude>

-	<!-- The content below was inserted by the ConSurf template ~~{{subst:ConSurf\|{{{1}}}\|{{{2}}}}}~~ -->	+	<!-- The content below was inserted by the ConSurf template -->
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|right\|200px]]		[[Image:Consurf_key_small.gif\|right\|200px]]
	Check		Check
	<jmol>		<jmol>
-	<!-- jmolSetTarget('1'); -->
	<jmolCheckbox>		<jmolCheckbox>
		+	<target>jmolApplet1
		+	</target>
	<scriptWhenChecked>		<scriptWhenChecked>
	select protein; define ~consurf_to_do selected;		select protein; define ~consurf_to_do selected;

Angel Herraez at 22:04, 11 October 2016

2016-10-11T22:04:12Z

←Older revision		Revision as of 22:04, 11 October 2016
Line 12:		Line 12:
	</noinclude>		</noinclude>

-	<!-- The content below was inserted by the ConSurf template -->	+	<!-- The content below was inserted by the ConSurf template {{subst:ConSurf\|{{{1}}}\|{{{2}}}}} -->
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|right\|200px]]		[[Image:Consurf_key_small.gif\|right\|200px]]

Angel Herraez: creating a template that inserts ConSurf div

2016-10-11T22:00:47Z

creating a template that inserts ConSurf div

←Older revision		Revision as of 22:00, 11 October 2016
Line 1:		Line 1:
	<noinclude>		<noinclude>
	== HOW TO USE THIS TEMPLATE: ==		== HOW TO USE THIS TEMPLATE: ==
-	It cannot be used in the regular way, as <nowiki>{{ConSurf}}</nowiki>	+	It '''cannot''' be used in the regular way, as <code><nowiki>{{ConSurf}}</nowiki></code>

-	You must insert it as <nowiki>{{subst:ConSurf\|st\|1stp}}</nowiki>	+	You must insert it as <code><nowiki>{{subst:ConSurf\|st\|1stp}}</nowiki></code>

-	Where the 2 parameters, st and 1stp, need to be adjusted to your case:	+	Where the 2 parameters, <code>st</code> and <code>1stp</code>, need to be adjusted to your case:
	* 1st parameter is the folder where ....		* 1st parameter is the folder where ....
	* 2nd parameter is the PDB ID of the model		* 2nd parameter is the PDB ID of the model

-	The result will look like ~~this~~ and will be made a ~~permament~~ content of the page (i.e. the template wikitext is removed and the result is inserted into the page source).	+	The result will look like below and will be made a hard-coded content of the page (i.e. the template wikitext is removed and the result is inserted into the page source).
	</noinclude>		</noinclude>

-		+	<!-- The content below was inserted by the ConSurf template -->
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|right\|200px]]		[[Image:Consurf_key_small.gif\|right\|200px]]
Line 33:		Line 33:
	of the method and the full data available from		of the method and the full data available from
	[http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID={{{2}}} ConSurf].		[http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID={{{2}}} ConSurf].
		+	<!-- end of content inserted by the ConSurf template -->

Angel Herraez: creating a template that inserts ConSurf div

2016-10-11T17:49:32Z

creating a template that inserts ConSurf div

←Older revision		Revision as of 17:49, 11 October 2016
Line 1:		Line 1:
		+	<noinclude>
		+	== HOW TO USE THIS TEMPLATE: ==
		+	It cannot be used in the regular way, as <nowiki>{{ConSurf}}</nowiki>
		+
		+	You must insert it as <nowiki>{{subst:ConSurf\|st\|1stp}}</nowiki>
		+
		+	Where the 2 parameters, st and 1stp, need to be adjusted to your case:
		+	* 1st parameter is the folder where ....
		+	* 2nd parameter is the PDB ID of the model
		+
		+	The result will look like this and will be made a permament content of the page (i.e. the template wikitext is removed and the result is inserted into the page source).
		+	</noinclude>
		+
		+
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|right\|200px]]		[[Image:Consurf_key_small.gif\|right\|200px]]