User:Evie Nguyen/Sandbox 1 - Revision history

Evie Nguyen at 18:34, 6 April 2018

2018-04-06T18:34:00Z

←Older revision		Revision as of 18:34, 6 April 2018
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-	= HRP1 =	+	=HRP1=

-	==Function==	+	== Function ==
-	~~<scene name='78/782620/2cjk_residues_100-200-2/1'>2CJK Residues 100-200</scene>~~	+


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	== RNA Binding ==		== RNA Binding ==
	<StructureSection load='2cjk' size='400' side='right' caption='(PDB entry [[2cjk]])' scene=''>		<StructureSection load='2cjk' size='400' side='right' caption='(PDB entry [[2cjk]])' scene=''>
		+
	The ribonucleotides of the recognized sequence 5'-AUAUAU-3' are designated from 5'-3' Ade2, Ade4, and Ade6; and Ura3, Ura5, and Ura7. The first two bases, Ade2 and Ura3, bind to the second RNA binding domain, and the remaining bases of the sequence bind to the first RNA binding domain. Each ribonucleotide has distinguishing interactions with the protein including		The ribonucleotides of the recognized sequence 5'-AUAUAU-3' are designated from 5'-3' Ade2, Ade4, and Ade6; and Ura3, Ura5, and Ura7. The first two bases, Ade2 and Ura3, bind to the second RNA binding domain, and the remaining bases of the sequence bind to the first RNA binding domain. Each ribonucleotide has distinguishing interactions with the protein including

-		+	<scene name='78/782620/2cjk_residues_100-200-2/1'>2CJK Residues 100-200</scene>

	=== Adenines ===		=== Adenines ===

Evie Nguyen at 18:18, 6 April 2018

2018-04-06T18:18:51Z

←Older revision		Revision as of 18:18, 6 April 2018
Line 1:		Line 1:
	= HRP1 =		= HRP1 =

		+	==Function==
	<scene name='78/782620/2cjk_residues_100-200-2/1'>2CJK Residues 100-200</scene>		<scene name='78/782620/2cjk_residues_100-200-2/1'>2CJK Residues 100-200</scene>

-	==Function==


	== RNA Binding ==		== RNA Binding ==
		+	<StructureSection load='2cjk' size='400' side='right' caption='(PDB entry [[2cjk]])' scene=''>
	The ribonucleotides of the recognized sequence 5'-AUAUAU-3' are designated from 5'-3' Ade2, Ade4, and Ade6; and Ura3, Ura5, and Ura7. The first two bases, Ade2 and Ura3, bind to the second RNA binding domain, and the remaining bases of the sequence bind to the first RNA binding domain. Each ribonucleotide has distinguishing interactions with the protein including		The ribonucleotides of the recognized sequence 5'-AUAUAU-3' are designated from 5'-3' Ade2, Ade4, and Ade6; and Ura3, Ura5, and Ura7. The first two bases, Ade2 and Ura3, bind to the second RNA binding domain, and the remaining bases of the sequence bind to the first RNA binding domain. Each ribonucleotide has distinguishing interactions with the protein including

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	=== Adenines ===		=== Adenines ===
-	~~<StructureSection load='2i2y' size='400' side='right' caption='SRp20 bound to RNA ligand and IgG binding domain 1 (PDB entry [[2i2y]])' scene=''>~~	+

	== Disease ==		== Disease ==

Evie Nguyen at 18:06, 6 April 2018

2018-04-06T18:06:09Z

←Older revision		Revision as of 18:06, 6 April 2018
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	= HRP1 =		= HRP1 =
-	HRP1 is found in ''Saccharomyces cerevisiae'', commonly known as "baker's yeast." It was discovered via solution NMR and then released to the RCSB Protein Data Bank with the ID "2CJK" in 2006. HRP1 is the RNA recognition domain of the Cleavage Factor Complex, positioning the RNA cleavage site prior to polyadenylation. It is composed of 2 RNA binding domains that recognize a specific 5'-AUAUAU-3' sequence of RNA.
-	[[Image:2CJK.png\|100 px\|left\|thumb\|Figure Legend]]<Structure load='2CJK' size='350' frame='true' align='right' caption='2CJK' scene='Insert optional scene name here' />
-	This is a default text for your page '''Evie Nguyen/Sandbox 1'''. Click above on '''edit this page''' to modify. Be careful with the < and > signs.
-	You may include any references to papers as in: the use of JSmol in Proteopedia <ref>DOI 10.1002/ijch.201300024</ref> or to the article describing Jmol <ref>PMID:21638687</ref> to the rescue.

-	<StructureSection load='2i2y' size='400' side='right' caption='SRp20 bound to RNA ligand and IgG binding domain 1 (PDB entry [[2i2y]])' scene=''>
	<scene name='78/782620/2cjk_residues_100-200-2/1'>2CJK Residues 100-200</scene>		<scene name='78/782620/2cjk_residues_100-200-2/1'>2CJK Residues 100-200</scene>
		+
		+	==Function==


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	=== Adenines ===		=== Adenines ===
-		+	<StructureSection load='2i2y' size='400' side='right' caption='SRp20 bound to RNA ligand and IgG binding domain 1 (PDB entry [[2i2y]])' scene=''>

	== Disease ==		== Disease ==
		+

	== Relevance ==		== Relevance ==

Evie Nguyen at 17:50, 6 April 2018

2018-04-06T17:50:21Z

←Older revision		Revision as of 17:50, 6 April 2018
Line 4:		Line 4:
	This is a default text for your page '''Evie Nguyen/Sandbox 1'''. Click above on '''edit this page''' to modify. Be careful with the < and > signs.		This is a default text for your page '''Evie Nguyen/Sandbox 1'''. Click above on '''edit this page''' to modify. Be careful with the < and > signs.
	You may include any references to papers as in: the use of JSmol in Proteopedia <ref>DOI 10.1002/ijch.201300024</ref> or to the article describing Jmol <ref>PMID:21638687</ref> to the rescue.		You may include any references to papers as in: the use of JSmol in Proteopedia <ref>DOI 10.1002/ijch.201300024</ref> or to the article describing Jmol <ref>PMID:21638687</ref> to the rescue.
-	~~__FORCETOC__~~	+
	<StructureSection load='2i2y' size='400' side='right' caption='SRp20 bound to RNA ligand and IgG binding domain 1 (PDB entry [[2i2y]])' scene=''>		<StructureSection load='2i2y' size='400' side='right' caption='SRp20 bound to RNA ligand and IgG binding domain 1 (PDB entry [[2i2y]])' scene=''>
	<scene name='78/782620/2cjk_residues_100-200-2/1'>2CJK Residues 100-200</scene>		<scene name='78/782620/2cjk_residues_100-200-2/1'>2CJK Residues 100-200</scene>

Evie Nguyen at 17:29, 6 April 2018

2018-04-06T17:29:41Z

←Older revision		Revision as of 17:29, 6 April 2018
Line 4:		Line 4:
	This is a default text for your page '''Evie Nguyen/Sandbox 1'''. Click above on '''edit this page''' to modify. Be careful with the < and > signs.		This is a default text for your page '''Evie Nguyen/Sandbox 1'''. Click above on '''edit this page''' to modify. Be careful with the < and > signs.
	You may include any references to papers as in: the use of JSmol in Proteopedia <ref>DOI 10.1002/ijch.201300024</ref> or to the article describing Jmol <ref>PMID:21638687</ref> to the rescue.		You may include any references to papers as in: the use of JSmol in Proteopedia <ref>DOI 10.1002/ijch.201300024</ref> or to the article describing Jmol <ref>PMID:21638687</ref> to the rescue.
-	~~__TOC__~~	+	__FORCETOC__
	<StructureSection load='2i2y' size='400' side='right' caption='SRp20 bound to RNA ligand and IgG binding domain 1 (PDB entry [[2i2y]])' scene=''>		<StructureSection load='2i2y' size='400' side='right' caption='SRp20 bound to RNA ligand and IgG binding domain 1 (PDB entry [[2i2y]])' scene=''>
	<scene name='78/782620/2cjk_residues_100-200-2/1'>2CJK Residues 100-200</scene>		<scene name='78/782620/2cjk_residues_100-200-2/1'>2CJK Residues 100-200</scene>

Evie Nguyen at 17:29, 6 April 2018

2018-04-06T17:29:18Z

←Older revision		Revision as of 17:29, 6 April 2018
Line 4:		Line 4:
	This is a default text for your page '''Evie Nguyen/Sandbox 1'''. Click above on '''edit this page''' to modify. Be careful with the < and > signs.		This is a default text for your page '''Evie Nguyen/Sandbox 1'''. Click above on '''edit this page''' to modify. Be careful with the < and > signs.
	You may include any references to papers as in: the use of JSmol in Proteopedia <ref>DOI 10.1002/ijch.201300024</ref> or to the article describing Jmol <ref>PMID:21638687</ref> to the rescue.		You may include any references to papers as in: the use of JSmol in Proteopedia <ref>DOI 10.1002/ijch.201300024</ref> or to the article describing Jmol <ref>PMID:21638687</ref> to the rescue.
		+	__TOC__
	<StructureSection load='2i2y' size='400' side='right' caption='SRp20 bound to RNA ligand and IgG binding domain 1 (PDB entry [[2i2y]])' scene=''>		<StructureSection load='2i2y' size='400' side='right' caption='SRp20 bound to RNA ligand and IgG binding domain 1 (PDB entry [[2i2y]])' scene=''>
	<scene name='78/782620/2cjk_residues_100-200-2/1'>2CJK Residues 100-200</scene>		<scene name='78/782620/2cjk_residues_100-200-2/1'>2CJK Residues 100-200</scene>

-	__TOC__

	== RNA Binding ==		== RNA Binding ==

Evie Nguyen at 17:28, 6 April 2018

2018-04-06T17:28:47Z

←Older revision		Revision as of 17:28, 6 April 2018
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	<StructureSection load='2i2y' size='400' side='right' caption='SRp20 bound to RNA ligand and IgG binding domain 1 (PDB entry [[2i2y]])' scene=''>		<StructureSection load='2i2y' size='400' side='right' caption='SRp20 bound to RNA ligand and IgG binding domain 1 (PDB entry [[2i2y]])' scene=''>
	<scene name='78/782620/2cjk_residues_100-200-2/1'>2CJK Residues 100-200</scene>		<scene name='78/782620/2cjk_residues_100-200-2/1'>2CJK Residues 100-200</scene>
		+
		+	__TOC__

	== RNA Binding ==		== RNA Binding ==

Evie Nguyen at 02:26, 3 April 2018

2018-04-03T02:26:46Z

←Older revision		Revision as of 02:26, 3 April 2018
Line 4:		Line 4:
	This is a default text for your page '''Evie Nguyen/Sandbox 1'''. Click above on '''edit this page''' to modify. Be careful with the < and > signs.		This is a default text for your page '''Evie Nguyen/Sandbox 1'''. Click above on '''edit this page''' to modify. Be careful with the < and > signs.
	You may include any references to papers as in: the use of JSmol in Proteopedia <ref>DOI 10.1002/ijch.201300024</ref> or to the article describing Jmol <ref>PMID:21638687</ref> to the rescue.		You may include any references to papers as in: the use of JSmol in Proteopedia <ref>DOI 10.1002/ijch.201300024</ref> or to the article describing Jmol <ref>PMID:21638687</ref> to the rescue.
-		+	<StructureSection load='2i2y' size='400' side='right' caption='SRp20 bound to RNA ligand and IgG binding domain 1 (PDB entry [[2i2y]])' scene=''>
	<scene name='78/782620/2cjk_residues_100-200-2/1'>2CJK Residues 100-200</scene>		<scene name='78/782620/2cjk_residues_100-200-2/1'>2CJK Residues 100-200</scene>

Evie Nguyen at 23:55, 2 April 2018

2018-04-02T23:55:06Z

←Older revision		Revision as of 23:55, 2 April 2018
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-	[[Image:Ade2-Ura3_H-Bonding.png\|100px\|left\|thumb\|~~Figure Legend~~]]	+	[[Image:Ade2-Ura3_H-Bonding.png\|100px\|left\|thumb\|Hydrogen bond between Ade2 and Ura3]]

Evie Nguyen at 23:54, 2 April 2018

2018-04-02T23:54:05Z

←Older revision		Revision as of 23:54, 2 April 2018
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-	[[Image:Ade2-Ura3_H-Bonding.png]]	+	[[Image:Ade2-Ura3_H-Bonding.png\|100px\|left\|thumb\|Figure Legend]]