1a04 - Revision history

OCA at 10:42, 2 August 2023

OCA — Wed, 02 Aug 2023 10:42:46 GMT

←Older revision		Revision as of 10:42, 2 August 2023
Line 3:		Line 3:
	<StructureSection load='1a04' size='340' side='right'caption='[[1a04]], [[Resolution\|resolution]] 2.20Å' scene=''>		<StructureSection load='1a04' size='340' side='right'caption='[[1a04]], [[Resolution\|resolution]] 2.20Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1a04]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/~~"bacillus_coli"_migula_1895 "bacillus~~ coli~~" migula 1895~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1A04 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1A04 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1a04]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1A04 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1A04 FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1a04 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1a04 OCA], [https://pdbe.org/1a04 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1a04 RCSB], [https://www.ebi.ac.uk/pdbsum/1a04 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1a04 ProSAT]</span></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.2Å</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1a04 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1a04 OCA], [https://pdbe.org/1a04 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1a04 RCSB], [https://www.ebi.ac.uk/pdbsum/1a04 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1a04 ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[https://www.uniprot.org/uniprot/NARL_ECOLI NARL_ECOLI]] This protein activates the expression of the nitrate reductase (narGHJI) and formate dehydrogenase-N (fdnGHI) operons and represses the transcription of the fumarate reductase (frdABCD) operon in response to a nitrate/nitrite induction signal transmitted by either the NarX or NarQ proteins.	+	[https://www.uniprot.org/uniprot/NARL_ECOLI NARL_ECOLI] This protein activates the expression of the nitrate reductase (narGHJI) and formate dehydrogenase-N (fdnGHI) operons and represses the transcription of the fumarate reductase (frdABCD) operon in response to a nitrate/nitrite induction signal transmitted by either the NarX or NarQ proteins.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 34:		Line 35:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Bacillus~~ coli ~~migula 1895~~]]	+	[[Category: Escherichia coli]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Baikalov, I]]	+	[[Category: Baikalov I]]
-	[[Category: Cascio, D]]	+	[[Category: Cascio D]]
-	[[Category: Dickerson~~, R E~~]]	+	[[Category: Dickerson RE]]
-	[[Category: Gunsalus~~, R P~~]]	+	[[Category: Gunsalus RP]]
-	[[Category: Kaczor-Grzeskowiak, M]]	+	[[Category: Kaczor-Grzeskowiak M]]
-	[[Category: Schroder, I]]	+	[[Category: Schroder I]]
-	~~[[Category: Response regulator]]~~	+
-	~~[[Category: Signal transduction protein]]~~	+
-	~~[[Category: Two-component system~~]]	+

OCA at 09:41, 26 May 2021

OCA — Wed, 26 May 2021 09:41:02 GMT

←Older revision		Revision as of 09:41, 26 May 2021
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	<StructureSection load='1a04' size='340' side='right'caption='[[1a04]], [[Resolution\|resolution]] 2.20Å' scene=''>		<StructureSection load='1a04' size='340' side='right'caption='[[1a04]], [[Resolution\|resolution]] 2.20Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1a04]] is a 2 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/"bacillus_coli"_migula_1895 "bacillus coli" migula 1895]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1A04 OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1A04 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1a04]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/"bacillus_coli"_migula_1895 "bacillus coli" migula 1895]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1A04 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1A04 FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1a04 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1a04 OCA], [~~http~~://pdbe.org/1a04 PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=1a04 RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/1a04 PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=1a04 ProSAT]</span></td></tr>	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1a04 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1a04 OCA], [https://pdbe.org/1a04 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1a04 RCSB], [https://www.ebi.ac.uk/pdbsum/1a04 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1a04 ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[~~http~~://www.uniprot.org/uniprot/NARL_ECOLI NARL_ECOLI]] This protein activates the expression of the nitrate reductase (narGHJI) and formate dehydrogenase-N (fdnGHI) operons and represses the transcription of the fumarate reductase (frdABCD) operon in response to a nitrate/nitrite induction signal transmitted by either the NarX or NarQ proteins.	+	[[https://www.uniprot.org/uniprot/NARL_ECOLI NARL_ECOLI]] This protein activates the expression of the nitrate reductase (narGHJI) and formate dehydrogenase-N (fdnGHI) operons and represses the transcription of the fumarate reductase (frdABCD) operon in response to a nitrate/nitrite induction signal transmitted by either the NarX or NarQ proteins.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 29:		Line 29:

	==See Also==		==See Also==
-	*[[Response regulator\|Response regulator]]	+	*[[Response regulator 3D structure\|Response regulator 3D structure]]
	== References ==		== References ==
	<references/>		<references/>

OCA at 07:06, 21 August 2019

OCA — Wed, 21 Aug 2019 07:06:35 GMT

←Older revision		Revision as of 07:06, 21 August 2019
Line 1:		Line 1:

	==THE STRUCTURE OF THE NITRATE/NITRITE RESPONSE REGULATOR PROTEIN NARL IN THE MONOCLINIC C2 CRYSTAL FORM==		==THE STRUCTURE OF THE NITRATE/NITRITE RESPONSE REGULATOR PROTEIN NARL IN THE MONOCLINIC C2 CRYSTAL FORM==
-	<StructureSection load='1a04' size='340' side='right' caption='[[1a04]], [[Resolution\|resolution]] 2.20Å' scene=''>	+	<StructureSection load='1a04' size='340' side='right'caption='[[1a04]], [[Resolution\|resolution]] 2.20Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1a04]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_coli"_migula_1895 "bacillus coli" migula 1895]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1A04 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1A04 FirstGlance]. <br>		<table><tr><td colspan='2'>[[1a04]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_coli"_migula_1895 "bacillus coli" migula 1895]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1A04 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1A04 FirstGlance]. <br>
Line 12:		Line 12:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/a0/1a04_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/a0/1a04_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
Line 27:		Line 27:
	</div>		</div>
	<div class="pdbe-citations 1a04" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 1a04" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[Response regulator\|Response regulator]]
	== References ==		== References ==
	<references/>		<references/>
Line 32:		Line 35:
	</StructureSection>		</StructureSection>
	[[Category: Bacillus coli migula 1895]]		[[Category: Bacillus coli migula 1895]]
		+	[[Category: Large Structures]]
	[[Category: Baikalov, I]]		[[Category: Baikalov, I]]
	[[Category: Cascio, D]]		[[Category: Cascio, D]]

OCA at 10:35, 15 November 2017

OCA — Wed, 15 Nov 2017 10:35:29 GMT

←Older revision		Revision as of 10:35, 15 November 2017
Line 1:		Line 1:
		+
	==THE STRUCTURE OF THE NITRATE/NITRITE RESPONSE REGULATOR PROTEIN NARL IN THE MONOCLINIC C2 CRYSTAL FORM==		==THE STRUCTURE OF THE NITRATE/NITRITE RESPONSE REGULATOR PROTEIN NARL IN THE MONOCLINIC C2 CRYSTAL FORM==
	<StructureSection load='1a04' size='340' side='right' caption='[[1a04]], [[Resolution\|resolution]] 2.20Å' scene=''>		<StructureSection load='1a04' size='340' side='right' caption='[[1a04]], [[Resolution\|resolution]] 2.20Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1a04]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_coli"_migula_1895 "bacillus coli" migula 1895]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1A04 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1A04 FirstGlance]. <br>		<table><tr><td colspan='2'>[[1a04]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_coli"_migula_1895 "bacillus coli" migula 1895]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1A04 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1A04 FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1a04 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1a04 OCA], [http://pdbe.org/1a04 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1a04 RCSB], [http://www.ebi.ac.uk/pdbsum/1a04 PDBsum]</span></td></tr>	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1a04 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1a04 OCA], [http://pdbe.org/1a04 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1a04 RCSB], [http://www.ebi.ac.uk/pdbsum/1a04 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1a04 ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 26:		Line 27:
	</div>		</div>
	<div class="pdbe-citations 1a04" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 1a04" style="background-color:#fffaf0;"></div>
-
-	==See Also==
-	*[[Response regulator\|Response regulator]]
	== References ==		== References ==
	<references/>		<references/>

OCA at 16:03, 8 February 2016

OCA — Mon, 08 Feb 2016 16:03:51 GMT

←Older revision		Revision as of 16:03, 8 February 2016
Line 15:		Line 15:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1a04 ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 15:44, 9 September 2015

OCA — Wed, 09 Sep 2015 15:44:48 GMT

←Older revision		Revision as of 15:44, 9 September 2015
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	<StructureSection load='1a04' size='340' side='right' caption='[[1a04]], [[Resolution\|resolution]] 2.20Å' scene=''>		<StructureSection load='1a04' size='340' side='right' caption='[[1a04]], [[Resolution\|resolution]] 2.20Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1a04]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Escherichia_coli Escherichia~~ coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1A04 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1A04 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1a04]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_coli"_migula_1895 "bacillus coli" migula 1895]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1A04 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1A04 FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1a04 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1a04 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1a04 RCSB], [http://www.ebi.ac.uk/pdbsum/1a04 PDBsum]</span></td></tr>	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1a04 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1a04 OCA], [http://pdbe.org/1a04 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1a04 RCSB], [http://www.ebi.ac.uk/pdbsum/1a04 PDBsum]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 25:		Line 25:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 1a04" style="background-color:#fffaf0;"></div>

	==See Also==		==See Also==
Line 32:		Line 33:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Escherichia~~ coli]]	+	[[Category: Bacillus coli migula 1895]]
	[[Category: Baikalov, I]]		[[Category: Baikalov, I]]
	[[Category: Cascio, D]]		[[Category: Cascio, D]]

OCA at 00:31, 25 December 2014

OCA — Thu, 25 Dec 2014 00:31:02 GMT

←Older revision		Revision as of 00:31, 25 December 2014
Line 5:		Line 5:
	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1a04 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1a04 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1a04 RCSB], [http://www.ebi.ac.uk/pdbsum/1a04 PDBsum]</span></td></tr>		</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1a04 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1a04 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1a04 RCSB], [http://www.ebi.ac.uk/pdbsum/1a04 PDBsum]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/NARL_ECOLI NARL_ECOLI]] This protein activates the expression of the nitrate reductase (narGHJI) and formate dehydrogenase-N (fdnGHI) operons and represses the transcription of the fumarate reductase (frdABCD) operon in response to a nitrate/nitrite induction signal transmitted by either the NarX or NarQ proteins.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]

OCA at 08:31, 22 December 2014

OCA — Mon, 22 Dec 2014 08:31:09 GMT

←Older revision		Revision as of 08:31, 22 December 2014
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1a04]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1A04 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1A04 FirstGlance]. <br>		<table><tr><td colspan='2'>[[1a04]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1A04 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1A04 FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1a04 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1a04 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1a04 RCSB], [http://www.ebi.ac.uk/pdbsum/1a04 PDBsum]</span></td></tr>	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1a04 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1a04 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1a04 RCSB], [http://www.ebi.ac.uk/pdbsum/1a04 PDBsum]</span></td></tr>
-	<table>	+	</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
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	</StructureSection>		</StructureSection>
	[[Category: Escherichia coli]]		[[Category: Escherichia coli]]
-	[[Category: Baikalov, I.]]	+	[[Category: Baikalov, I]]
-	[[Category: Cascio, D.]]	+	[[Category: Cascio, D]]
-	[[Category: Dickerson, R E.]]	+	[[Category: Dickerson, R E]]
-	[[Category: Gunsalus, R P.]]	+	[[Category: Gunsalus, R P]]
-	[[Category: Kaczor-Grzeskowiak, M.]]	+	[[Category: Kaczor-Grzeskowiak, M]]
-	[[Category: Schroder, I.]]	+	[[Category: Schroder, I]]
	[[Category: Response regulator]]		[[Category: Response regulator]]
	[[Category: Signal transduction protein]]		[[Category: Signal transduction protein]]
	[[Category: Two-component system]]		[[Category: Two-component system]]

OCA at 08:27, 23 July 2014

OCA — Wed, 23 Jul 2014 08:27:28 GMT

←Older revision		Revision as of 08:27, 23 July 2014
Line 1:		Line 1:
-	[[~~Image~~:1a04.~~png\|left~~\|200px]]	+	==THE STRUCTURE OF THE NITRATE/NITRITE RESPONSE REGULATOR PROTEIN NARL IN THE MONOCLINIC C2 CRYSTAL FORM==
		+	<StructureSection load='1a04' size='340' side='right' caption='[[1a04]], [[Resolution\|resolution]] 2.20Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[1a04]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1A04 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1A04 FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1a04 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1a04 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1a04 RCSB], [http://www.ebi.ac.uk/pdbsum/1a04 PDBsum]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/a0/1a04_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	The structure of the Escherichia coli response regulator NarL has been solved in a new, monoclinic space group, and compared with the earlier orthorhombic crystal structure. Because the monoclinic crystal has two independent NarL molecules per asymmetric unit, we now have three completely independent snapshots of the NarL molecule: two from the monoclinic form and one from the orthorhombic. Comparison of these three structures shows the following: (a) The pairing of N and C domains of the NarL molecule proposed from the earlier analysis is in fact correct, although the polypeptide chain connecting domains was, and remains, disordered and not completely visible. The new structure exhibits identical relative orientation of N and C domains, and supplies some of the missing residues, leaving a gap of only seven amino acids. (b) Examination of corresponding features in the three independent NarL molecules shows that deformations in structure produced by crystal packing are negligible. (c) The "telephone receiver" model of NarL activation is confirmed. The N domain of NarL blocks the binding of DNA to the C domain that would be expected from the helix-turn-helix structure of the C domain. Hence, binding can only occur after significant displacement of N and C domains. (d) NarL monomers have a strong tendency toward dimerization involving contacts between helixes alpha 1 in the two monomers, and this may have mechanistic significance in DNA binding. Analogous involvement of helix alpha 1 in intermolecular contacts is also found in UhpA and in the CheY/CheZ complex.

-	~~{{STRUCTURE_1a04\| PDB=1a04 \| SCENE= }}~~	+	NarL dimerization? Suggestive evidence from a new crystal form.,Baikalov I, Schroder I, Kaczor-Grzeskowiak M, Cascio D, Gunsalus RP, Dickerson RE Biochemistry. 1998 Mar 17;37(11):3665-76. PMID:9521685<ref>PMID:9521685</ref>

-	~~===THE STRUCTURE OF THE NITRATE~~/~~NITRITE RESPONSE REGULATOR PROTEIN NARL IN THE MONOCLINIC C2 CRYSTAL FORM===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_9521685}}~~	+
-		+
-	~~==About this Structure==~~	+
-	~~[[1a04]] is~~ a ~~2 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org/wiki/Escherichia_coli Escherichia coli]~~. ~~Full crystallographic information is available from [http:~~/~~/oca.weizmann.ac.il/oca-bin/ocashort?id=1A04 OCA].~~	+

	==See Also==		==See Also==
	*[[Response regulator\|Response regulator]]		*[[Response regulator\|Response regulator]]
-		+	== References ==
-	==~~Reference~~==	+	<references/>
-	<~~ref group="xtra">PMID:009521685<~~/~~ref~~><~~references group="xtra"~~/>	+	__TOC__
		+	</StructureSection>
	[[Category: Escherichia coli]]		[[Category: Escherichia coli]]
	[[Category: Baikalov, I.]]		[[Category: Baikalov, I.]]

OCA at 10:41, 20 October 2012

OCA — Sat, 20 Oct 2012 10:41:46 GMT

←Older revision		Revision as of 10:41, 20 October 2012
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	==About this Structure==		==About this Structure==
-	[[1a04]] is a 2 chain structure ~~of [[Response regulator]]~~ with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1A04 OCA].	+	[[1a04]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1A04 OCA].

	==See Also==		==See Also==