1b1h - Revision history

OCA at 23:18, 27 December 2023

OCA — Wed, 27 Dec 2023 23:18:38 GMT

←Older revision		Revision as of 23:18, 27 December 2023
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	<StructureSection load='1b1h' size='340' side='right'caption='[[1b1h]], [[Resolution\|resolution]] 1.80Å' scene=''>		<StructureSection load='1b1h' size='340' side='right'caption='[[1b1h]], [[Resolution\|resolution]] 1.80Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1b1h]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1B1H OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1B1H FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1b1h]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Salmonella_enterica_subsp._enterica_serovar_Typhimurium Salmonella enterica subsp. enterica serovar Typhimurium]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1B1H OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1B1H FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=IUM:URANYL+(VI)+ION'>IUM</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.8Å</td></tr>
-	<tr id='~~NonStdRes~~'><td class="sblockLbl"><b>[[~~Non-Standard_Residue~~\|~~NonStd Res~~:]]</b></td><td class="sblockDat"><scene name='pdbligand=HPE:HOMOPHENYLALANINE'>HPE</scene></td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=HPE:HOMOPHENYLALANINE'>HPE</scene>, <scene name='pdbligand=IUM:URANYL+(VI)+ION'>IUM</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1b1h FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1b1h OCA], [https://pdbe.org/1b1h PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1b1h RCSB], [https://www.ebi.ac.uk/pdbsum/1b1h PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1b1h ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1b1h FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1b1h OCA], [https://pdbe.org/1b1h PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1b1h RCSB], [https://www.ebi.ac.uk/pdbsum/1b1h PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1b1h ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[https://www.uniprot.org/uniprot/OPPA_SALTY OPPA_SALTY]] This protein is a component of the oligopeptide permease, a binding protein-dependent transport system, it binds peptides up to five amino acids long with high affinity.	+	[https://www.uniprot.org/uniprot/OPPA_SALTY OPPA_SALTY] This protein is a component of the oligopeptide permease, a binding protein-dependent transport system, it binds peptides up to five amino acids long with high affinity.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
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	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Davies, T G]]~~	+	[[Category: Salmonella enterica subsp. enterica serovar Typhimurium]]
-	~~[[Category: Tame, J R~~.H]]	+	[[Category: Davies TG]]
-	[[Category: ~~Periplasmic peptide binding protein~~]]	+	[[Category: Tame JRH]]
-	[[Category: ~~Signaling protein~~]]	+

OCA at 06:56, 24 February 2021

OCA — Wed, 24 Feb 2021 06:56:15 GMT

←Older revision		Revision as of 06:56, 24 February 2021
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	<StructureSection load='1b1h' size='340' side='right'caption='[[1b1h]], [[Resolution\|resolution]] 1.80Å' scene=''>		<StructureSection load='1b1h' size='340' side='right'caption='[[1b1h]], [[Resolution\|resolution]] 1.80Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1b1h]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1B1H OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1B1H FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1b1h]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1B1H OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1B1H FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=IUM:URANYL+(VI)+ION'>IUM</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=IUM:URANYL+(VI)+ION'>IUM</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=HPE:HOMOPHENYLALANINE'>HPE</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=HPE:HOMOPHENYLALANINE'>HPE</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1b1h FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1b1h OCA], [~~http~~://pdbe.org/1b1h PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=1b1h RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/1b1h PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=1b1h ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1b1h FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1b1h OCA], [https://pdbe.org/1b1h PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1b1h RCSB], [https://www.ebi.ac.uk/pdbsum/1b1h PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1b1h ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[~~http~~://www.uniprot.org/uniprot/OPPA_SALTY OPPA_SALTY]] This protein is a component of the oligopeptide permease, a binding protein-dependent transport system, it binds peptides up to five amino acids long with high affinity.	+	[[https://www.uniprot.org/uniprot/OPPA_SALTY OPPA_SALTY]] This protein is a component of the oligopeptide permease, a binding protein-dependent transport system, it binds peptides up to five amino acids long with high affinity.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 31:		Line 31:

	==See Also==		==See Also==
-	*[[~~Oligopeptide-binding protein~~\|~~Oligopeptide-binding protein~~]]	+	*[[ABC transporter 3D structures\|ABC transporter 3D structures]]
	== References ==		== References ==
	<references/>		<references/>

OCA at 08:57, 21 May 2019

OCA — Tue, 21 May 2019 08:57:26 GMT

←Older revision		Revision as of 08:57, 21 May 2019
Line 1:		Line 1:

	==OLIGO-PEPTIDE BINDING PROTEIN/TRIPEPTIDE (LYS HPE LYS) COMPLEX==		==OLIGO-PEPTIDE BINDING PROTEIN/TRIPEPTIDE (LYS HPE LYS) COMPLEX==
-	<StructureSection load='1b1h' size='340' side='right' caption='[[1b1h]], [[Resolution\|resolution]] 1.80Å' scene=''>	+	<StructureSection load='1b1h' size='340' side='right'caption='[[1b1h]], [[Resolution\|resolution]] 1.80Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1b1h]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1B1H OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1B1H FirstGlance]. <br>		<table><tr><td colspan='2'>[[1b1h]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1B1H OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1B1H FirstGlance]. <br>
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	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/b1/1b1h_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/b1/1b1h_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
Line 36:		Line 36:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
	[[Category: Davies, T G]]		[[Category: Davies, T G]]
	[[Category: Tame, J R.H]]		[[Category: Tame, J R.H]]
	[[Category: Periplasmic peptide binding protein]]		[[Category: Periplasmic peptide binding protein]]
	[[Category: Signaling protein]]		[[Category: Signaling protein]]

OCA at 06:16, 17 August 2017

OCA — Thu, 17 Aug 2017 06:16:42 GMT

←Older revision		Revision as of 06:16, 17 August 2017
Line 1:		Line 1:
		+
	==OLIGO-PEPTIDE BINDING PROTEIN/TRIPEPTIDE (LYS HPE LYS) COMPLEX==		==OLIGO-PEPTIDE BINDING PROTEIN/TRIPEPTIDE (LYS HPE LYS) COMPLEX==
	<StructureSection load='1b1h' size='340' side='right' caption='[[1b1h]], [[Resolution\|resolution]] 1.80Å' scene=''>		<StructureSection load='1b1h' size='340' side='right' caption='[[1b1h]], [[Resolution\|resolution]] 1.80Å' scene=''>
Line 5:		Line 6:
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=IUM:URANYL+(VI)+ION'>IUM</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=IUM:URANYL+(VI)+ION'>IUM</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=HPE:HOMOPHENYLALANINE'>HPE</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=HPE:HOMOPHENYLALANINE'>HPE</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1b1h FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1b1h OCA], [http://pdbe.org/1b1h PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1b1h RCSB], [http://www.ebi.ac.uk/pdbsum/1b1h PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1b1h FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1b1h OCA], [http://pdbe.org/1b1h PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1b1h RCSB], [http://www.ebi.ac.uk/pdbsum/1b1h PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1b1h ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 17:		Line 18:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1b1h ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 00:41, 12 September 2015

OCA — Sat, 12 Sep 2015 00:41:58 GMT

←Older revision		Revision as of 00:41, 12 September 2015
Line 2:		Line 2:
	<StructureSection load='1b1h' size='340' side='right' caption='[[1b1h]], [[Resolution\|resolution]] 1.80Å' scene=''>		<StructureSection load='1b1h' size='340' side='right' caption='[[1b1h]], [[Resolution\|resolution]] 1.80Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1b1h]] is a 2 chain structure ~~with sequence from [http://en.wikipedia.org/wiki/Salmonella_enterica_subsp._enterica_serovar_typhimurium Salmonella enterica subsp. enterica serovar typhimurium]~~. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1B1H OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1B1H FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1b1h]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1B1H OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1B1H FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=IUM:URANYL+(VI)+ION'>IUM</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=IUM:URANYL+(VI)+ION'>IUM</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=HPE:HOMOPHENYLALANINE'>HPE</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=HPE:HOMOPHENYLALANINE'>HPE</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1b1h FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1b1h OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1b1h RCSB], [http://www.ebi.ac.uk/pdbsum/1b1h PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1b1h FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1b1h OCA], [http://pdbe.org/1b1h PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1b1h RCSB], [http://www.ebi.ac.uk/pdbsum/1b1h PDBsum]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 27:		Line 27:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 1b1h" style="background-color:#fffaf0;"></div>

	==See Also==		==See Also==
Line 34:		Line 35:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Salmonella enterica subsp. enterica serovar typhimurium]]
	[[Category: Davies, T G]]		[[Category: Davies, T G]]
	[[Category: Tame, J R.H]]		[[Category: Tame, J R.H]]
	[[Category: Periplasmic peptide binding protein]]		[[Category: Periplasmic peptide binding protein]]
	[[Category: Signaling protein]]		[[Category: Signaling protein]]

OCA at 21:33, 25 December 2014

OCA — Thu, 25 Dec 2014 21:33:24 GMT

←Older revision		Revision as of 21:33, 25 December 2014
Line 7:		Line 7:
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1b1h FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1b1h OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1b1h RCSB], [http://www.ebi.ac.uk/pdbsum/1b1h PDBsum]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1b1h FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1b1h OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1b1h RCSB], [http://www.ebi.ac.uk/pdbsum/1b1h PDBsum]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/OPPA_SALTY OPPA_SALTY]] This protein is a component of the oligopeptide permease, a binding protein-dependent transport system, it binds peptides up to five amino acids long with high affinity.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]

OCA at 09:53, 22 December 2014

OCA — Mon, 22 Dec 2014 09:53:45 GMT

←Older revision		Revision as of 09:53, 22 December 2014
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1b1h]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Salmonella_enterica_subsp._enterica_serovar_typhimurium Salmonella enterica subsp. enterica serovar typhimurium]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1B1H OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1B1H FirstGlance]. <br>		<table><tr><td colspan='2'>[[1b1h]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Salmonella_enterica_subsp._enterica_serovar_typhimurium Salmonella enterica subsp. enterica serovar typhimurium]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1B1H OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1B1H FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=IUM:URANYL+(VI)+ION'>IUM</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=IUM:URANYL+(VI)+ION'>IUM</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=HPE:HOMOPHENYLALANINE'>HPE</scene></td></tr>	+	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=HPE:HOMOPHENYLALANINE'>HPE</scene></td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1b1h FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1b1h OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1b1h RCSB], [http://www.ebi.ac.uk/pdbsum/1b1h PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1b1h FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1b1h OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1b1h RCSB], [http://www.ebi.ac.uk/pdbsum/1b1h PDBsum]</span></td></tr>
-	<table>	+	</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 33:		Line 33:
	</StructureSection>		</StructureSection>
	[[Category: Salmonella enterica subsp. enterica serovar typhimurium]]		[[Category: Salmonella enterica subsp. enterica serovar typhimurium]]
-	[[Category: Davies, T G.]]	+	[[Category: Davies, T G]]
-	[[Category: Tame, J R.H.]]	+	[[Category: Tame, J R.H]]
	[[Category: Periplasmic peptide binding protein]]		[[Category: Periplasmic peptide binding protein]]
	[[Category: Signaling protein]]		[[Category: Signaling protein]]

OCA at 03:24, 7 August 2014

OCA — Thu, 07 Aug 2014 03:24:07 GMT

←Older revision		Revision as of 03:24, 7 August 2014
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-	[[~~Image:~~1b1h.~~png~~\|~~left~~\|200px]]	+	==OLIGO-PEPTIDE BINDING PROTEIN/TRIPEPTIDE (LYS HPE LYS) COMPLEX==
		+	<StructureSection load='1b1h' size='340' side='right' caption='[[1b1h]], [[Resolution\|resolution]] 1.80Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[1b1h]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Salmonella_enterica_subsp._enterica_serovar_typhimurium Salmonella enterica subsp. enterica serovar typhimurium]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1B1H OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1B1H FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=IUM:URANYL+(VI)+ION'>IUM</scene><br>
		+	<tr><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=HPE:HOMOPHENYLALANINE'>HPE</scene></td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1b1h FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1b1h OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1b1h RCSB], [http://www.ebi.ac.uk/pdbsum/1b1h PDBsum]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/b1/1b1h_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	The oligopeptide-binding protein OppA provides a useful model system for studying the physical chemistry underlying noncovalent interactions since it binds a variety of readily synthesized ligands. We have studied the binding of eight closely related tripeptides of the type Lysine-X-Lysine, where X is an abnormal amino acid, by isothermal titration calorimetry (ITC) and X-ray crystallography. The tripeptides fall into three series of ligands, which have been designed to examine the effects of small changes to the central side chain. Three ligands have a primary amine as the second side chain, two have a straight alkane chain, and three have ring systems. The results have revealed a definite preference for the binding of hydrophobic residues over the positively charged side chains, the latter binding only weakly due to unfavorable enthalpic effects. Within the series of positively charged groups, a point of lowest affinity has been identified and this is proposed to arise from unfavorable electrostatic interactions in the pocket, including the disruption of a key salt bridge. Marked entropy-enthalpy compensation is found across the series, and some of the difficulties in designing tightly binding ligands have been highlighted.

-	~~{{STRUCTURE_1b1h\| PDB=1b1h \| SCENE= }}~~	+	Relating structure to thermodynamics: the crystal structures and binding affinity of eight OppA-peptide complexes.,Davies TG, Hubbard RE, Tame JR Protein Sci. 1999 Jul;8(7):1432-44. PMID:10422831<ref>PMID:10422831</ref>

-	~~===OLIGO-PEPTIDE BINDING PROTEIN~~/~~TRIPEPTIDE (LYS HPE LYS) COMPLEX===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_10422831}}~~	+
-		+
-	~~==About this Structure==~~	+
-	~~[[1b1h]] is~~ a ~~2 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org/wiki/Salmonella_enterica_subsp~~.~~_enterica_serovar_typhimurium Salmonella enterica subsp. enterica serovar typhimurium]. Full crystallographic information is available from [http:~~/~~/oca.weizmann.ac.il/oca-bin/ocashort?id=1B1H OCA].~~	+

	==See Also==		==See Also==
	*[[Oligopeptide-binding protein\|Oligopeptide-binding protein]]		*[[Oligopeptide-binding protein\|Oligopeptide-binding protein]]
-		+	== References ==
-	==~~Reference~~==	+	<references/>
-	<~~ref group="xtra">PMID:010422831<~~/~~ref~~><~~references group="xtra"~~/>	+	__TOC__
		+	</StructureSection>
	[[Category: Salmonella enterica subsp. enterica serovar typhimurium]]		[[Category: Salmonella enterica subsp. enterica serovar typhimurium]]
	[[Category: Davies, T G.]]		[[Category: Davies, T G.]]

OCA at 21:55, 20 October 2012

OCA — Sat, 20 Oct 2012 21:55:06 GMT

←Older revision		Revision as of 21:55, 20 October 2012
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	==About this Structure==		==About this Structure==
-	[[1b1h]] is a 2 chain structure ~~of [[Oligopeptide-binding protein]]~~ with sequence from [http://en.wikipedia.org/wiki/Salmonella_enterica_subsp._enterica_serovar_typhimurium Salmonella enterica subsp. enterica serovar typhimurium]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1B1H OCA].	+	[[1b1h]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Salmonella_enterica_subsp._enterica_serovar_typhimurium Salmonella enterica subsp. enterica serovar typhimurium]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1B1H OCA].

	==See Also==		==See Also==

OCA at 14:39, 27 July 2012

OCA — Fri, 27 Jul 2012 14:39:03 GMT

←Older revision		Revision as of 14:39, 27 July 2012
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	[[Image:1b1h.png\|left\|200px]]		[[Image:1b1h.png\|left\|200px]]

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	===OLIGO-PEPTIDE BINDING PROTEIN/TRIPEPTIDE (LYS HPE LYS) COMPLEX===		===OLIGO-PEPTIDE BINDING PROTEIN/TRIPEPTIDE (LYS HPE LYS) COMPLEX===

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