1ba3 - Revision history

OCA at 10:59, 2 August 2023

OCA — Wed, 02 Aug 2023 10:59:24 GMT

←Older revision		Revision as of 10:59, 2 August 2023
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	<StructureSection load='1ba3' size='340' side='right'caption='[[1ba3]], [[Resolution\|resolution]] 2.20Å' scene=''>		<StructureSection load='1ba3' size='340' side='right'caption='[[1ba3]], [[Resolution\|resolution]] 2.20Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1ba3]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Common_eastern_firefly Common eastern firefly~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1BA3 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1BA3 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1ba3]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Photinus_pyralis Photinus pyralis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1BA3 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1BA3 FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=MBR:TRIBROMOMETHANE'>MBR</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.2Å</td></tr>
-	<tr id='~~activity~~'><td class="sblockLbl"><b>~~Activity~~:</b></td><td class="sblockDat"><~~span class~~='~~plainlinks~~'>[https://en.wikipedia.org/wiki/Photinus-luciferin_4-monooxygenase_(ATP-hydrolyzing) Photinus-luciferin 4-monooxygenase (ATP-hydrolyzing)], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.13.12.7 1.13.12.7] </~~span~~></td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MBR:TRIBROMOMETHANE'>MBR</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1ba3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ba3 OCA], [https://pdbe.org/1ba3 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1ba3 RCSB], [https://www.ebi.ac.uk/pdbsum/1ba3 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1ba3 ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1ba3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ba3 OCA], [https://pdbe.org/1ba3 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1ba3 RCSB], [https://www.ebi.ac.uk/pdbsum/1ba3 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1ba3 ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[https://www.uniprot.org/uniprot/LUCI_PHOPY LUCI_PHOPY]] Produces green light with a wavelength of 562 nm.	+	[https://www.uniprot.org/uniprot/LUCI_PHOPY LUCI_PHOPY] Produces green light with a wavelength of 562 nm.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 36:		Line 36:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Common eastern firefly]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Brick, P]]	+	[[Category: Photinus pyralis]]
-	[[Category: Conti, E]]	+	[[Category: Brick P]]
-	[[Category: Franks~~, N P~~]]	+	[[Category: Conti E]]
-	[[Category: Jenkins, A]]	+	[[Category: Franks NP]]
-	[[Category: Lieb~~, W R]]~~	+	[[Category: Jenkins A]]
-	~~[[Category: Luminescence]]~~	+	[[Category: Lieb WR]]
-	~~[[Category: Monooxygenase]]~~	+
-	~~[[Category: Oxidoreductase]]~~	+
-	~~[[Category: Photoprotein~~]]	+

OCA at 15:05, 2 June 2021

OCA — Wed, 02 Jun 2021 15:05:52 GMT

←Older revision		Revision as of 15:05, 2 June 2021
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	<StructureSection load='1ba3' size='340' side='right'caption='[[1ba3]], [[Resolution\|resolution]] 2.20Å' scene=''>		<StructureSection load='1ba3' size='340' side='right'caption='[[1ba3]], [[Resolution\|resolution]] 2.20Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1ba3]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Common_eastern_firefly Common eastern firefly]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1BA3 OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1BA3 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1ba3]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Common_eastern_firefly Common eastern firefly]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1BA3 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1BA3 FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MBR:TRIBROMOMETHANE'>MBR</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MBR:TRIBROMOMETHANE'>MBR</scene></td></tr>
-	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://en.wikipedia.org/wiki/Photinus-luciferin_4-monooxygenase_(ATP-hydrolyzing) Photinus-luciferin 4-monooxygenase (ATP-hydrolyzing)], with EC number [~~http~~://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.13.12.7 1.13.12.7] </span></td></tr>	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Photinus-luciferin_4-monooxygenase_(ATP-hydrolyzing) Photinus-luciferin 4-monooxygenase (ATP-hydrolyzing)], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.13.12.7 1.13.12.7] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1ba3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ba3 OCA], [~~http~~://pdbe.org/1ba3 PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=1ba3 RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/1ba3 PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=1ba3 ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1ba3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ba3 OCA], [https://pdbe.org/1ba3 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1ba3 RCSB], [https://www.ebi.ac.uk/pdbsum/1ba3 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1ba3 ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[~~http~~://www.uniprot.org/uniprot/LUCI_PHOPY LUCI_PHOPY]] Produces green light with a wavelength of 562 nm.	+	[[https://www.uniprot.org/uniprot/LUCI_PHOPY LUCI_PHOPY]] Produces green light with a wavelength of 562 nm.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 31:		Line 31:

	==See Also==		==See Also==
-	*[[Luciferase\|Luciferase]]	+	*[[Luciferase 3D structures\|Luciferase 3D structures]]
	== References ==		== References ==
	<references/>		<references/>

OCA at 16:25, 28 August 2019

OCA — Wed, 28 Aug 2019 16:25:53 GMT

←Older revision		Revision as of 16:25, 28 August 2019
Line 1:		Line 1:

	==FIREFLY LUCIFERASE IN COMPLEX WITH BROMOFORM==		==FIREFLY LUCIFERASE IN COMPLEX WITH BROMOFORM==
-	<StructureSection load='1ba3' size='340' side='right' caption='[[1ba3]], [[Resolution\|resolution]] 2.20Å' scene=''>	+	<StructureSection load='1ba3' size='340' side='right'caption='[[1ba3]], [[Resolution\|resolution]] 2.20Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1ba3]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Common_eastern_firefly Common eastern firefly]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1BA3 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1BA3 FirstGlance]. <br>		<table><tr><td colspan='2'>[[1ba3]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Common_eastern_firefly Common eastern firefly]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1BA3 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1BA3 FirstGlance]. <br>
Line 14:		Line 14:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ba/1ba3_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ba/1ba3_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
Line 29:		Line 29:
	</div>		</div>
	<div class="pdbe-citations 1ba3" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 1ba3" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[Luciferase\|Luciferase]]
	== References ==		== References ==
	<references/>		<references/>
Line 34:		Line 37:
	</StructureSection>		</StructureSection>
	[[Category: Common eastern firefly]]		[[Category: Common eastern firefly]]
		+	[[Category: Large Structures]]
	[[Category: Brick, P]]		[[Category: Brick, P]]
	[[Category: Conti, E]]		[[Category: Conti, E]]

OCA at 11:13, 22 November 2017

OCA — Wed, 22 Nov 2017 11:13:51 GMT

←Older revision		Revision as of 11:13, 22 November 2017
Line 1:		Line 1:
		+
	==FIREFLY LUCIFERASE IN COMPLEX WITH BROMOFORM==		==FIREFLY LUCIFERASE IN COMPLEX WITH BROMOFORM==
	<StructureSection load='1ba3' size='340' side='right' caption='[[1ba3]], [[Resolution\|resolution]] 2.20Å' scene=''>		<StructureSection load='1ba3' size='340' side='right' caption='[[1ba3]], [[Resolution\|resolution]] 2.20Å' scene=''>
Line 5:		Line 6:
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MBR:TRIBROMOMETHANE'>MBR</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MBR:TRIBROMOMETHANE'>MBR</scene></td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Photinus-luciferin_4-monooxygenase_(ATP-hydrolyzing) Photinus-luciferin 4-monooxygenase (ATP-hydrolyzing)], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.13.12.7 1.13.12.7] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Photinus-luciferin_4-monooxygenase_(ATP-hydrolyzing) Photinus-luciferin 4-monooxygenase (ATP-hydrolyzing)], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.13.12.7 1.13.12.7] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1ba3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ba3 OCA], [http://pdbe.org/1ba3 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1ba3 RCSB], [http://www.ebi.ac.uk/pdbsum/1ba3 PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1ba3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ba3 OCA], [http://pdbe.org/1ba3 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1ba3 RCSB], [http://www.ebi.ac.uk/pdbsum/1ba3 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1ba3 ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
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	</div>		</div>
	<div class="pdbe-citations 1ba3" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 1ba3" style="background-color:#fffaf0;"></div>
-
-	==See Also==
-	*[[Luciferase\|Luciferase]]
	== References ==		== References ==
	<references/>		<references/>

OCA at 14:44, 9 February 2016

OCA — Tue, 09 Feb 2016 14:44:39 GMT

←Older revision		Revision as of 14:44, 9 February 2016
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	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1ba3 ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 23:16, 10 September 2015

OCA — Thu, 10 Sep 2015 23:16:11 GMT

←Older revision		Revision as of 23:16, 10 September 2015
Line 2:		Line 2:
	<StructureSection load='1ba3' size='340' side='right' caption='[[1ba3]], [[Resolution\|resolution]] 2.20Å' scene=''>		<StructureSection load='1ba3' size='340' side='right' caption='[[1ba3]], [[Resolution\|resolution]] 2.20Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1ba3]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Photinus_pyralis Photinus pyralis~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1BA3 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1BA3 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1ba3]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Common_eastern_firefly Common eastern firefly]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1BA3 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1BA3 FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MBR:TRIBROMOMETHANE'>MBR</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MBR:TRIBROMOMETHANE'>MBR</scene></td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Photinus-luciferin_4-monooxygenase_(ATP-hydrolyzing) Photinus-luciferin 4-monooxygenase (ATP-hydrolyzing)], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.13.12.7 1.13.12.7] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Photinus-luciferin_4-monooxygenase_(ATP-hydrolyzing) Photinus-luciferin 4-monooxygenase (ATP-hydrolyzing)], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.13.12.7 1.13.12.7] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1ba3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ba3 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1ba3 RCSB], [http://www.ebi.ac.uk/pdbsum/1ba3 PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1ba3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ba3 OCA], [http://pdbe.org/1ba3 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1ba3 RCSB], [http://www.ebi.ac.uk/pdbsum/1ba3 PDBsum]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 27:		Line 27:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 1ba3" style="background-color:#fffaf0;"></div>

	==See Also==		==See Also==
Line 34:		Line 35:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Photinus pyralis~~]]	+	[[Category: Common eastern firefly]]
	[[Category: Brick, P]]		[[Category: Brick, P]]
	[[Category: Conti, E]]		[[Category: Conti, E]]

OCA at 07:28, 25 December 2014

OCA — Thu, 25 Dec 2014 07:28:05 GMT

←Older revision		Revision as of 07:28, 25 December 2014
Line 7:		Line 7:
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1ba3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ba3 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1ba3 RCSB], [http://www.ebi.ac.uk/pdbsum/1ba3 PDBsum]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1ba3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ba3 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1ba3 RCSB], [http://www.ebi.ac.uk/pdbsum/1ba3 PDBsum]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/LUCI_PHOPY LUCI_PHOPY]] Produces green light with a wavelength of 562 nm.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]

OCA at 09:44, 22 December 2014

OCA — Mon, 22 Dec 2014 09:44:51 GMT

←Older revision		Revision as of 09:44, 22 December 2014
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1ba3]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Photinus_pyralis Photinus pyralis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1BA3 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1BA3 FirstGlance]. <br>		<table><tr><td colspan='2'>[[1ba3]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Photinus_pyralis Photinus pyralis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1BA3 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1BA3 FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MBR:TRIBROMOMETHANE'>MBR</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MBR:TRIBROMOMETHANE'>MBR</scene></td></tr>
-	<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Photinus-luciferin_4-monooxygenase_(ATP-hydrolyzing) Photinus-luciferin 4-monooxygenase (ATP-hydrolyzing)], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.13.12.7 1.13.12.7] </span></td></tr>	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Photinus-luciferin_4-monooxygenase_(ATP-hydrolyzing) Photinus-luciferin 4-monooxygenase (ATP-hydrolyzing)], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.13.12.7 1.13.12.7] </span></td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1ba3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ba3 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1ba3 RCSB], [http://www.ebi.ac.uk/pdbsum/1ba3 PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1ba3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ba3 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1ba3 RCSB], [http://www.ebi.ac.uk/pdbsum/1ba3 PDBsum]</span></td></tr>
-	<table>	+	</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 33:		Line 33:
	</StructureSection>		</StructureSection>
	[[Category: Photinus pyralis]]		[[Category: Photinus pyralis]]
-	[[Category: Brick, P.]]	+	[[Category: Brick, P]]
-	[[Category: Conti, E.]]	+	[[Category: Conti, E]]
-	[[Category: Franks, N P.]]	+	[[Category: Franks, N P]]
-	[[Category: Jenkins, A.]]	+	[[Category: Jenkins, A]]
-	[[Category: Lieb, W R.]]	+	[[Category: Lieb, W R]]
	[[Category: Luminescence]]		[[Category: Luminescence]]
	[[Category: Monooxygenase]]		[[Category: Monooxygenase]]
	[[Category: Oxidoreductase]]		[[Category: Oxidoreductase]]
	[[Category: Photoprotein]]		[[Category: Photoprotein]]

OCA at 03:17, 7 August 2014

OCA — Thu, 07 Aug 2014 03:17:06 GMT

←Older revision		Revision as of 03:17, 7 August 2014
Line 1:		Line 1:
-	[[~~Image~~:1ba3.~~png\|left~~\|200px]]	+	==FIREFLY LUCIFERASE IN COMPLEX WITH BROMOFORM==
		+	<StructureSection load='1ba3' size='340' side='right' caption='[[1ba3]], [[Resolution\|resolution]] 2.20Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[1ba3]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Photinus_pyralis Photinus pyralis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1BA3 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1BA3 FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MBR:TRIBROMOMETHANE'>MBR</scene><br>
		+	<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Photinus-luciferin_4-monooxygenase_(ATP-hydrolyzing) Photinus-luciferin 4-monooxygenase (ATP-hydrolyzing)], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.13.12.7 1.13.12.7] </span></td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1ba3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ba3 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1ba3 RCSB], [http://www.ebi.ac.uk/pdbsum/1ba3 PDBsum]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ba/1ba3_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	The firefly luciferase enzyme from Photinus pyralis is probably the best-characterized model system for studying anesthetic-protein interactions. It binds a diverse range of general anesthetics over a large potency range, displays a sensitivity to anesthetics that is very similar to that found in animals, and has an anesthetic sensitivity that can be modulated by one of its substrates (ATP). In this paper we describe the properties of bromoform acting as a general anesthetic (in Rana temporaria tadpoles) and as an inhibitor of the firefly luciferase enzyme at high and low ATP concentrations. In addition, we describe the crystal structure of the low-ATP form of the luciferase enzyme in the presence of bromoform at 2.2-A resolution. These results provide a structural basis for understanding the anesthetic inhibition of the enzyme, as well as an explanation for the ATP modulation of its anesthetic sensitivity.

-	~~{{STRUCTURE_1ba3\| PDB=1ba3 \| SCENE= }}~~	+	Structural basis for the inhibition of firefly luciferase by a general anesthetic.,Franks NP, Jenkins A, Conti E, Lieb WR, Brick P Biophys J. 1998 Nov;75(5):2205-11. PMID:9788915<ref>PMID:9788915</ref>

-	~~===FIREFLY LUCIFERASE IN COMPLEX WITH BROMOFORM===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_9788915}}~~	+
-		+
-	~~==About this Structure==~~	+
-	~~[[1ba3]] is~~ a ~~1 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org/wiki/Photinus_pyralis Photinus pyralis]~~. ~~Full crystallographic information is available from [http:~~/~~/oca.weizmann.ac.il/oca-bin/ocashort?id=1BA3 OCA].~~	+

	==See Also==		==See Also==
	*[[Luciferase\|Luciferase]]		*[[Luciferase\|Luciferase]]
-		+	== References ==
-	==~~Reference~~==	+	<references/>
-	<~~ref group="xtra">PMID:009788915<~~/~~ref~~><~~references group="xtra"~~/>	+	__TOC__
		+	</StructureSection>
	[[Category: Photinus pyralis]]		[[Category: Photinus pyralis]]
	[[Category: Brick, P.]]		[[Category: Brick, P.]]

OCA at 14:11, 20 October 2012

OCA — Sat, 20 Oct 2012 14:11:34 GMT

←Older revision		Revision as of 14:11, 20 October 2012
Line 8:		Line 8:

	==About this Structure==		==About this Structure==
-	[[1ba3]] is a 1 chain structure ~~of [[Luciferase]]~~ with sequence from [http://en.wikipedia.org/wiki/Photinus_pyralis Photinus pyralis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1BA3 OCA].	+	[[1ba3]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Photinus_pyralis Photinus pyralis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1BA3 OCA].

	==See Also==		==See Also==