1bdw - Revision history

OCA at 11:00, 2 August 2023

OCA — Wed, 02 Aug 2023 11:00:22 GMT

←Older revision		Revision as of 11:00, 2 August 2023
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	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1bdw]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Brevibacillus_brevis Brevibacillus brevis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1BDW OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1BDW FirstGlance]. <br>		<table><tr><td colspan='2'>[[1bdw]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Brevibacillus_brevis Brevibacillus brevis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1BDW OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1BDW FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACY:ACETIC+ACID'>ACY</scene>, <scene name='pdbligand=DLE:D-LEUCINE'>DLE</scene>, <scene name='pdbligand=DVA:D-VALINE'>DVA</scene>, <scene name='pdbligand=ETA:ETHANOLAMINE'>ETA</scene>, <scene name='pdbligand=FVA:N-FORMYL-L-VALINE'>FVA</scene>, <scene name='pdbligand=PRD_000150:GRAMICIDIN+A'>PRD_000150</scene></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.7Å</td></tr>
		+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACY:ACETIC+ACID'>ACY</scene>, <scene name='pdbligand=DLE:D-LEUCINE'>DLE</scene>, <scene name='pdbligand=DVA:D-VALINE'>DVA</scene>, <scene name='pdbligand=ETA:ETHANOLAMINE'>ETA</scene>, <scene name='pdbligand=FVA:N-FORMYL-L-VALINE'>FVA</scene>, <scene name='pdbligand=PRD_000150:GRAMICIDIN+A'>PRD_000150</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1bdw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1bdw OCA], [https://pdbe.org/1bdw PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1bdw RCSB], [https://www.ebi.ac.uk/pdbsum/1bdw PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1bdw ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1bdw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1bdw OCA], [https://pdbe.org/1bdw PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1bdw RCSB], [https://www.ebi.ac.uk/pdbsum/1bdw PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1bdw ProSAT]</span></td></tr>
	</table>		</table>

OCA at 11:19, 30 November 2022

OCA — Wed, 30 Nov 2022 11:19:27 GMT

←Older revision		Revision as of 11:19, 30 November 2022
Line 4:		Line 4:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1bdw]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Brevibacillus_brevis Brevibacillus brevis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1BDW OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1BDW FirstGlance]. <br>		<table><tr><td colspan='2'>[[1bdw]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Brevibacillus_brevis Brevibacillus brevis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1BDW OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1BDW FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACY:ACETIC+ACID'>ACY</scene>~~</td></tr>~~	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACY:ACETIC+ACID'>ACY</scene>, <scene name='pdbligand=DLE:D-LEUCINE'>DLE</scene>, <scene name='pdbligand=DVA:D-VALINE'>DVA</scene>, <scene name='pdbligand=ETA:ETHANOLAMINE'>ETA</scene>, <scene name='pdbligand=FVA:N-FORMYL-L-VALINE'>FVA</scene>, <scene name='pdbligand=PRD_000150:GRAMICIDIN+A'>PRD_000150</scene></td></tr>
-	~~<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat">~~<scene name='pdbligand=DLE:D-LEUCINE'>DLE</scene>, <scene name='pdbligand=DVA:D-VALINE'>DVA</scene>, <scene name='pdbligand=ETA:ETHANOLAMINE'>ETA</scene>, <scene name='pdbligand=FVA:N-FORMYL-L-VALINE'>FVA</scene><~~/td></tr>~~	+
-	~~<tr id~~='~~related'><td class~~=~~"sblockLbl"><b>[[Related_structure\|Related~~:~~]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;~~'>[[1tk2\|1tk2]], [[2xdc\|2xdc]], [[1av2\|1av2]], [[1c4d\|1c4d]], [[1gmk\|1gmk]], [[1grm\|1grm]], [[1jno\|1jno]], [[1kqe\|1kqe]], [[1mag\|1mag]], [[1mic\|1mic]], [[1ng8\|1ng8]], [[1nrm\|1nrm]], [[1nru\|1nru]], [[1nt5\|1nt5]], [[1jo3\|1jo3]], [[1jo4\|1jo4]], [[1nt6\|1nt6]], [[1tkq\|1tkq]], [[1w5u\|1w5u]], [[2izq\|2izq]], [[3l8l\|3l8l]], [[1al4\|1al4]], [[1alx\|1alx]], [[1alz\|1alz]]</~~div~~></td></tr>	+
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1bdw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1bdw OCA], [https://pdbe.org/1bdw PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1bdw RCSB], [https://www.ebi.ac.uk/pdbsum/1bdw PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1bdw ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1bdw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1bdw OCA], [https://pdbe.org/1bdw PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1bdw RCSB], [https://www.ebi.ac.uk/pdbsum/1bdw PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1bdw ProSAT]</span></td></tr>
	</table>		</table>
Line 27:		Line 25:
	[[Category: Brevibacillus brevis]]		[[Category: Brevibacillus brevis]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Burkhart~~, B M~~]]	+	[[Category: Burkhart BM]]
-	[[Category: Duax~~, W L~~]]	+	[[Category: Duax WL]]
-	[[Category: Pangborn~~, W A]]~~	+	[[Category: Pangborn WA]]
-	~~[[Category: Antibacterial]]~~	+
-	~~[[Category: Antibiotic]]~~	+
-	~~[[Category: Antifungal]]~~	+
-	~~[[Category: Double helix]]~~	+
-	~~[[Category: Gramicidin]]~~	+
-	~~[[Category: Linear gramicidin]]~~	+
-	~~[[Category: Membrane ion channel~~]]	+

OCA at 06:58, 24 February 2021

OCA — Wed, 24 Feb 2021 06:58:47 GMT

←Older revision		Revision as of 06:58, 24 February 2021
Line 3:		Line 3:
	<StructureSection load='1bdw' size='340' side='right'caption='[[1bdw]], [[Resolution\|resolution]] 1.70Å' scene=''>		<StructureSection load='1bdw' size='340' side='right'caption='[[1bdw]], [[Resolution\|resolution]] 1.70Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1bdw]] is a 2 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Brevibacillus_brevis Brevibacillus brevis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1BDW OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1BDW FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1bdw]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Brevibacillus_brevis Brevibacillus brevis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1BDW OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1BDW FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACY:ACETIC+ACID'>ACY</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACY:ACETIC+ACID'>ACY</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=DLE:D-LEUCINE'>DLE</scene>, <scene name='pdbligand=DVA:D-VALINE'>DVA</scene>, <scene name='pdbligand=ETA:ETHANOLAMINE'>ETA</scene>, <scene name='pdbligand=FVA:N-FORMYL-L-VALINE'>FVA</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=DLE:D-LEUCINE'>DLE</scene>, <scene name='pdbligand=DVA:D-VALINE'>DVA</scene>, <scene name='pdbligand=ETA:ETHANOLAMINE'>ETA</scene>, <scene name='pdbligand=FVA:N-FORMYL-L-VALINE'>FVA</scene></td></tr>
-	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1tk2\|1tk2]], [[2xdc\|2xdc]], [[1av2\|1av2]], [[1c4d\|1c4d]], [[1gmk\|1gmk]], [[1grm\|1grm]], [[1jno\|1jno]], [[1kqe\|1kqe]], [[1mag\|1mag]], [[1mic\|1mic]], [[1ng8\|1ng8]], [[1nrm\|1nrm]], [[1nru\|1nru]], [[1nt5\|1nt5]], [[1jo3\|1jo3]], [[1jo4\|1jo4]], [[1nt6\|1nt6]], [[1tkq\|1tkq]], [[1w5u\|1w5u]], [[2izq\|2izq]], [[3l8l\|3l8l]], [[1al4\|1al4]], [[1alx\|1alx]], [[1alz\|1alz]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1tk2\|1tk2]], [[2xdc\|2xdc]], [[1av2\|1av2]], [[1c4d\|1c4d]], [[1gmk\|1gmk]], [[1grm\|1grm]], [[1jno\|1jno]], [[1kqe\|1kqe]], [[1mag\|1mag]], [[1mic\|1mic]], [[1ng8\|1ng8]], [[1nrm\|1nrm]], [[1nru\|1nru]], [[1nt5\|1nt5]], [[1jo3\|1jo3]], [[1jo4\|1jo4]], [[1nt6\|1nt6]], [[1tkq\|1tkq]], [[1w5u\|1w5u]], [[2izq\|2izq]], [[3l8l\|3l8l]], [[1al4\|1al4]], [[1alx\|1alx]], [[1alz\|1alz]]</div></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1bdw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1bdw OCA], [~~http~~://pdbe.org/1bdw PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=1bdw RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/1bdw PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=1bdw ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1bdw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1bdw OCA], [https://pdbe.org/1bdw PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1bdw RCSB], [https://www.ebi.ac.uk/pdbsum/1bdw PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1bdw ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 09:26, 21 May 2019

OCA — Tue, 21 May 2019 09:26:40 GMT

←Older revision		Revision as of 09:26, 21 May 2019
Line 1:		Line 1:

	==GRAMICIDIN D FROM BACILLUS BREVIS (ACTIVE FORM)==		==GRAMICIDIN D FROM BACILLUS BREVIS (ACTIVE FORM)==
-	<StructureSection load='1bdw' size='340' side='right' caption='[[1bdw]], [[Resolution\|resolution]] 1.70Å' scene=''>	+	<StructureSection load='1bdw' size='340' side='right'caption='[[1bdw]], [[Resolution\|resolution]] 1.70Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1bdw]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Brevibacillus_brevis Brevibacillus brevis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1BDW OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1BDW FirstGlance]. <br>		<table><tr><td colspan='2'>[[1bdw]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Brevibacillus_brevis Brevibacillus brevis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1BDW OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1BDW FirstGlance]. <br>
Line 26:		Line 26:
	</StructureSection>		</StructureSection>
	[[Category: Brevibacillus brevis]]		[[Category: Brevibacillus brevis]]
		+	[[Category: Large Structures]]
	[[Category: Burkhart, B M]]		[[Category: Burkhart, B M]]
	[[Category: Duax, W L]]		[[Category: Duax, W L]]

OCA at 06:16, 17 August 2017

OCA — Thu, 17 Aug 2017 06:16:49 GMT

←Older revision		Revision as of 06:16, 17 August 2017
Line 1:		Line 1:
		+
	==GRAMICIDIN D FROM BACILLUS BREVIS (ACTIVE FORM)==		==GRAMICIDIN D FROM BACILLUS BREVIS (ACTIVE FORM)==
	<StructureSection load='1bdw' size='340' side='right' caption='[[1bdw]], [[Resolution\|resolution]] 1.70Å' scene=''>		<StructureSection load='1bdw' size='340' side='right' caption='[[1bdw]], [[Resolution\|resolution]] 1.70Å' scene=''>
Line 6:		Line 7:
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=DLE:D-LEUCINE'>DLE</scene>, <scene name='pdbligand=DVA:D-VALINE'>DVA</scene>, <scene name='pdbligand=ETA:ETHANOLAMINE'>ETA</scene>, <scene name='pdbligand=FVA:N-FORMYL-L-VALINE'>FVA</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=DLE:D-LEUCINE'>DLE</scene>, <scene name='pdbligand=DVA:D-VALINE'>DVA</scene>, <scene name='pdbligand=ETA:ETHANOLAMINE'>ETA</scene>, <scene name='pdbligand=FVA:N-FORMYL-L-VALINE'>FVA</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1tk2\|1tk2]], [[2xdc\|2xdc]], [[1av2\|1av2]], [[1c4d\|1c4d]], [[1gmk\|1gmk]], [[1grm\|1grm]], [[1jno\|1jno]], [[1kqe\|1kqe]], [[1mag\|1mag]], [[1mic\|1mic]], [[1ng8\|1ng8]], [[1nrm\|1nrm]], [[1nru\|1nru]], [[1nt5\|1nt5]], [[1jo3\|1jo3]], [[1jo4\|1jo4]], [[1nt6\|1nt6]], [[1tkq\|1tkq]], [[1w5u\|1w5u]], [[2izq\|2izq]], [[3l8l\|3l8l]], [[1al4\|1al4]], [[1alx\|1alx]], [[1alz\|1alz]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1tk2\|1tk2]], [[2xdc\|2xdc]], [[1av2\|1av2]], [[1c4d\|1c4d]], [[1gmk\|1gmk]], [[1grm\|1grm]], [[1jno\|1jno]], [[1kqe\|1kqe]], [[1mag\|1mag]], [[1mic\|1mic]], [[1ng8\|1ng8]], [[1nrm\|1nrm]], [[1nru\|1nru]], [[1nt5\|1nt5]], [[1jo3\|1jo3]], [[1jo4\|1jo4]], [[1nt6\|1nt6]], [[1tkq\|1tkq]], [[1w5u\|1w5u]], [[2izq\|2izq]], [[3l8l\|3l8l]], [[1al4\|1al4]], [[1alx\|1alx]], [[1alz\|1alz]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1bdw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1bdw OCA], [http://pdbe.org/1bdw PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1bdw RCSB], [http://www.ebi.ac.uk/pdbsum/1bdw PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1bdw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1bdw OCA], [http://pdbe.org/1bdw PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1bdw RCSB], [http://www.ebi.ac.uk/pdbsum/1bdw PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1bdw ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 04:30, 10 September 2015

OCA — Thu, 10 Sep 2015 04:30:04 GMT

←Older revision		Revision as of 04:30, 10 September 2015
Line 6:		Line 6:
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=DLE:D-LEUCINE'>DLE</scene>, <scene name='pdbligand=DVA:D-VALINE'>DVA</scene>, <scene name='pdbligand=ETA:ETHANOLAMINE'>ETA</scene>, <scene name='pdbligand=FVA:N-FORMYL-L-VALINE'>FVA</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=DLE:D-LEUCINE'>DLE</scene>, <scene name='pdbligand=DVA:D-VALINE'>DVA</scene>, <scene name='pdbligand=ETA:ETHANOLAMINE'>ETA</scene>, <scene name='pdbligand=FVA:N-FORMYL-L-VALINE'>FVA</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1tk2\|1tk2]], [[2xdc\|2xdc]], [[1av2\|1av2]], [[1c4d\|1c4d]], [[1gmk\|1gmk]], [[1grm\|1grm]], [[1jno\|1jno]], [[1kqe\|1kqe]], [[1mag\|1mag]], [[1mic\|1mic]], [[1ng8\|1ng8]], [[1nrm\|1nrm]], [[1nru\|1nru]], [[1nt5\|1nt5]], [[1jo3\|1jo3]], [[1jo4\|1jo4]], [[1nt6\|1nt6]], [[1tkq\|1tkq]], [[1w5u\|1w5u]], [[2izq\|2izq]], [[3l8l\|3l8l]], [[1al4\|1al4]], [[1alx\|1alx]], [[1alz\|1alz]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1tk2\|1tk2]], [[2xdc\|2xdc]], [[1av2\|1av2]], [[1c4d\|1c4d]], [[1gmk\|1gmk]], [[1grm\|1grm]], [[1jno\|1jno]], [[1kqe\|1kqe]], [[1mag\|1mag]], [[1mic\|1mic]], [[1ng8\|1ng8]], [[1nrm\|1nrm]], [[1nru\|1nru]], [[1nt5\|1nt5]], [[1jo3\|1jo3]], [[1jo4\|1jo4]], [[1nt6\|1nt6]], [[1tkq\|1tkq]], [[1w5u\|1w5u]], [[2izq\|2izq]], [[3l8l\|3l8l]], [[1al4\|1al4]], [[1alx\|1alx]], [[1alz\|1alz]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1bdw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1bdw OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1bdw RCSB], [http://www.ebi.ac.uk/pdbsum/1bdw PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1bdw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1bdw OCA], [http://pdbe.org/1bdw PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1bdw RCSB], [http://www.ebi.ac.uk/pdbsum/1bdw PDBsum]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
Line 16:		Line 16:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 1bdw" style="background-color:#fffaf0;"></div>

	==See Also==		==See Also==

OCA at 09:22, 22 December 2014

OCA — Mon, 22 Dec 2014 09:22:49 GMT

←Older revision		Revision as of 09:22, 22 December 2014
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1bdw]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Brevibacillus_brevis Brevibacillus brevis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1BDW OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1BDW FirstGlance]. <br>		<table><tr><td colspan='2'>[[1bdw]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Brevibacillus_brevis Brevibacillus brevis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1BDW OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1BDW FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACY:ACETIC+ACID'>ACY</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACY:ACETIC+ACID'>ACY</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=DLE:D-LEUCINE'>DLE</scene>, <scene name='pdbligand=DVA:D-VALINE'>DVA</scene>, <scene name='pdbligand=ETA:ETHANOLAMINE'>ETA</scene>, <scene name='pdbligand=FVA:N-FORMYL-L-VALINE'>FVA</scene></td></tr>	+	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=DLE:D-LEUCINE'>DLE</scene>, <scene name='pdbligand=DVA:D-VALINE'>DVA</scene>, <scene name='pdbligand=ETA:ETHANOLAMINE'>ETA</scene>, <scene name='pdbligand=FVA:N-FORMYL-L-VALINE'>FVA</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1tk2\|1tk2]], [[2xdc\|2xdc]], [[1av2\|1av2]], [[1c4d\|1c4d]], [[1gmk\|1gmk]], [[1grm\|1grm]], [[1jno\|1jno]], [[1kqe\|1kqe]], [[1mag\|1mag]], [[1mic\|1mic]], [[1ng8\|1ng8]], [[1nrm\|1nrm]], [[1nru\|1nru]], [[1nt5\|1nt5]], [[1jo3\|1jo3]], [[1jo4\|1jo4]], [[1nt6\|1nt6]], [[1tkq\|1tkq]], [[1w5u\|1w5u]], [[2izq\|2izq]], [[3l8l\|3l8l]], [[1al4\|1al4]], [[1alx\|1alx]], [[1alz\|1alz]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1tk2\|1tk2]], [[2xdc\|2xdc]], [[1av2\|1av2]], [[1c4d\|1c4d]], [[1gmk\|1gmk]], [[1grm\|1grm]], [[1jno\|1jno]], [[1kqe\|1kqe]], [[1mag\|1mag]], [[1mic\|1mic]], [[1ng8\|1ng8]], [[1nrm\|1nrm]], [[1nru\|1nru]], [[1nt5\|1nt5]], [[1jo3\|1jo3]], [[1jo4\|1jo4]], [[1nt6\|1nt6]], [[1tkq\|1tkq]], [[1w5u\|1w5u]], [[2izq\|2izq]], [[3l8l\|3l8l]], [[1al4\|1al4]], [[1alx\|1alx]], [[1alz\|1alz]]</td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1bdw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1bdw OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1bdw RCSB], [http://www.ebi.ac.uk/pdbsum/1bdw PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1bdw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1bdw OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1bdw RCSB], [http://www.ebi.ac.uk/pdbsum/1bdw PDBsum]</span></td></tr>
-	<table>	+	</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
Line 24:		Line 24:
	</StructureSection>		</StructureSection>
	[[Category: Brevibacillus brevis]]		[[Category: Brevibacillus brevis]]
-	[[Category: Burkhart, B M.]]	+	[[Category: Burkhart, B M]]
-	[[Category: Duax, W L.]]	+	[[Category: Duax, W L]]
-	[[Category: Pangborn, W A.]]	+	[[Category: Pangborn, W A]]
	[[Category: Antibacterial]]		[[Category: Antibacterial]]
	[[Category: Antibiotic]]		[[Category: Antibiotic]]

OCA at 03:24, 7 August 2014

OCA — Thu, 07 Aug 2014 03:24:20 GMT

←Older revision		Revision as of 03:24, 7 August 2014
Line 1:		Line 1:
-	[[~~Image:~~1bdw.~~png~~\|~~left~~\|~~200px~~]]	+	==GRAMICIDIN D FROM BACILLUS BREVIS (ACTIVE FORM)==
		+	<StructureSection load='1bdw' size='340' side='right' caption='[[1bdw]], [[Resolution\|resolution]] 1.70Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[1bdw]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Brevibacillus_brevis Brevibacillus brevis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1BDW OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1BDW FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACY:ACETIC+ACID'>ACY</scene><br>
		+	<tr><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=DLE:D-LEUCINE'>DLE</scene>, <scene name='pdbligand=DVA:D-VALINE'>DVA</scene>, <scene name='pdbligand=ETA:ETHANOLAMINE'>ETA</scene>, <scene name='pdbligand=FVA:N-FORMYL-L-VALINE'>FVA</scene></td></tr>
		+	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1tk2\|1tk2]], [[2xdc\|2xdc]], [[1av2\|1av2]], [[1c4d\|1c4d]], [[1gmk\|1gmk]], [[1grm\|1grm]], [[1jno\|1jno]], [[1kqe\|1kqe]], [[1mag\|1mag]], [[1mic\|1mic]], [[1ng8\|1ng8]], [[1nrm\|1nrm]], [[1nru\|1nru]], [[1nt5\|1nt5]], [[1jo3\|1jo3]], [[1jo4\|1jo4]], [[1nt6\|1nt6]], [[1tkq\|1tkq]], [[1w5u\|1w5u]], [[2izq\|2izq]], [[3l8l\|3l8l]], [[1al4\|1al4]], [[1alx\|1alx]], [[1alz\|1alz]]</td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1bdw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1bdw OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1bdw RCSB], [http://www.ebi.ac.uk/pdbsum/1bdw PDBsum]</span></td></tr>
		+	<table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	The linear pentadecapeptide antibiotic, gramicidin D, is a naturally occurring product of Bacillus brevis known to form ion channels in synthetic and natural membranes. The x-ray crystal structures of the right-handed double-stranded double-helical dimers (DSDH) reported here agree with 15N-NMR and CD data on the functional gramicidin D channel in lipid bilayers. These structures demonstrate single-file ion transfer through the channels. The results also indicate that previous crystal structure reports of a left-handed double-stranded double-helical dimer in complex with Cs+ and K+ salts may be in error and that our evidence points to the DSDH as the major conformer responsible for ion transport in membranes.

-	~~{{STRUCTURE_1bdw\| PDB=1bdw \| SCENE= }}~~	+	The conducting form of gramicidin A is a right-handed double-stranded double helix.,Burkhart BM, Li N, Langs DA, Pangborn WA, Duax WL Proc Natl Acad Sci U S A. 1998 Oct 27;95(22):12950-5. PMID:9789021<ref>PMID:9789021</ref>

-	~~===GRAMICIDIN D FROM BACILLUS BREVIS (ACTIVE FORM)===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_9789021}}~~	+
-		+
-	~~==About this Structure==~~	+
-	~~[[1bdw]] is~~ a ~~2 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org/wiki/Brevibacillus_brevis Brevibacillus brevis]~~. ~~Full crystallographic information is available from [http:~~/~~/oca.weizmann.ac.il/oca-bin/ocashort?id=1BDW OCA].~~	+

	==See Also==		==See Also==
	*[[Gramicidin\|Gramicidin]]		*[[Gramicidin\|Gramicidin]]
-		+	== References ==
-	==~~Reference~~==	+	<references/>
-	<~~ref group="xtra">PMID:009789021<~~/~~ref~~><~~references group="xtra"~~/>	+	__TOC__
		+	</StructureSection>
	[[Category: Brevibacillus brevis]]		[[Category: Brevibacillus brevis]]
	[[Category: Burkhart, B M.]]		[[Category: Burkhart, B M.]]

OCA at 07:41, 20 October 2012

OCA — Sat, 20 Oct 2012 07:41:31 GMT

←Older revision		Revision as of 07:41, 20 October 2012
Line 8:		Line 8:

	==About this Structure==		==About this Structure==
-	[[1bdw]] is a 2 chain structure ~~of [[Gramicidin]]~~ with sequence from [http://en.wikipedia.org/wiki/Brevibacillus_brevis Brevibacillus brevis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1BDW OCA].	+	[[1bdw]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Brevibacillus_brevis Brevibacillus brevis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1BDW OCA].

	==See Also==		==See Also==

OCA at 17:09, 25 July 2012

OCA — Wed, 25 Jul 2012 17:09:02 GMT

←Older revision		Revision as of 17:09, 25 July 2012
Line 1:		Line 1:
	[[Image:1bdw.png\|left\|200px]]		[[Image:1bdw.png\|left\|200px]]

-	<!--
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-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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	{{STRUCTURE_1bdw\| PDB=1bdw \| SCENE= }}		{{STRUCTURE_1bdw\| PDB=1bdw \| SCENE= }}

	===GRAMICIDIN D FROM BACILLUS BREVIS (ACTIVE FORM)===		===GRAMICIDIN D FROM BACILLUS BREVIS (ACTIVE FORM)===

-
-	<!--
-	The line below this paragraph, {{ABSTRACT_PUBMED_9789021}}, adds the Publication Abstract to the page
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	{{ABSTRACT_PUBMED_9789021}}		{{ABSTRACT_PUBMED_9789021}}

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	==See Also==		==See Also==
-	*[[Gramicidin]]	+	*[[Gramicidin\|Gramicidin]]

	==Reference==		==Reference==