1bit - Revision history

OCA at 15:33, 13 March 2024

OCA — Wed, 13 Mar 2024 15:33:16 GMT

←Older revision		Revision as of 15:33, 13 March 2024
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	<StructureSection load='1bit' size='340' side='right'caption='[[1bit]], [[Resolution\|resolution]] 1.83Å' scene=''>		<StructureSection load='1bit' size='340' side='right'caption='[[1bit]], [[Resolution\|resolution]] 1.83Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1bit]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Atlantic_salmon Atlantic salmon~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1BIT OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1BIT FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1bit]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Salmo_salar Salmo salar]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1BIT OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1BIT FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BEN:BENZAMIDINE'>BEN</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.83Å</td></tr>
		+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BEN:BENZAMIDINE'>BEN</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1bit FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1bit OCA], [https://pdbe.org/1bit PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1bit RCSB], [https://www.ebi.ac.uk/pdbsum/1bit PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1bit ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1bit FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1bit OCA], [https://pdbe.org/1bit PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1bit RCSB], [https://www.ebi.ac.uk/pdbsum/1bit PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1bit ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/TRY1_SALSA TRY1_SALSA]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 17:		Line 20:
	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1bit ConSurf].		</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1bit ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
-	<div style="background-color:#fffaf0;">
-	== Publication Abstract from PubMed ==
-	Anionic salmon trypsin in a second crystal form (ST-IIB) has been refined at 1.83 A, resolution. The crystals are orthorhombic and belong to space group P2(1)2(1)2 with lattice parameters a = 77.09, b = 82.33 and c = 31.16 A. The present structure has been compared to salmon trypsin as it appears in a previously reported crystal form (ST-IIA) with cell dimensions a = 61.95, b = 84.33 and c = 39.11 A [Smalas & Hordvik (1993). Acta Cryst. D49, 318-330]. The presence of a sulfate group involved in several hydrogen bonds to active-site residues, and the location of an additional benzamidine site in the crystal lattice, are the most striking differences between the present and the previous structure. Superposition of main-chain atoms in the two structures give an overall r.m.s. difference of 0.26 A, with the main differences located to areas with different molecular packing. The overall coordinate error is estimated to be between 0.20 and 0.25 A, by the method of Luzzati.
-
-	Structure of anionic salmon trypsin in a second crystal form.,Berglund GI, Smalas AO, Hordvik A, Willassen NP Acta Crystallogr D Biol Crystallogr. 1995 Sep 1;51(Pt 5):725-30. PMID:15299802<ref>PMID:15299802</ref>
-
-	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	</div>
-	<div class="pdbe-citations 1bit" style="background-color:#fffaf0;"></div>

	==See Also==		==See Also==
	*[[Trypsin 3D structures\|Trypsin 3D structures]]		*[[Trypsin 3D structures\|Trypsin 3D structures]]
-	== References ==
-	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Atlantic salmon]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Berglund, G I~~]]	+	[[Category: Salmo salar]]
-	[[Category: ~~Serine proteinase~~]]	+	[[Category: Berglund GI]]

OCA at 10:40, 19 May 2021

OCA — Wed, 19 May 2021 10:40:46 GMT

←Older revision		Revision as of 10:40, 19 May 2021
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	<StructureSection load='1bit' size='340' side='right'caption='[[1bit]], [[Resolution\|resolution]] 1.83Å' scene=''>		<StructureSection load='1bit' size='340' side='right'caption='[[1bit]], [[Resolution\|resolution]] 1.83Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1bit]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Atlantic_salmon Atlantic salmon]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1BIT OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1BIT FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1bit]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Atlantic_salmon Atlantic salmon]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1BIT OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1BIT FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BEN:BENZAMIDINE'>BEN</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BEN:BENZAMIDINE'>BEN</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1bit FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1bit OCA], [~~http~~://pdbe.org/1bit PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=1bit RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/1bit PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=1bit ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1bit FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1bit OCA], [https://pdbe.org/1bit PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1bit RCSB], [https://www.ebi.ac.uk/pdbsum/1bit PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1bit ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 28:		Line 28:

	==See Also==		==See Also==
-	*[[Trypsin\|Trypsin]]	+	*[[Trypsin 3D structures\|Trypsin 3D structures]]
	== References ==		== References ==
	<references/>		<references/>

OCA at 10:54, 17 July 2019

OCA — Wed, 17 Jul 2019 10:54:32 GMT

←Older revision		Revision as of 10:54, 17 July 2019
Line 1:		Line 1:

	==THE CRYSTAL STRUCTURE OF ANIONIC SALMON TRYPSIN IN A SECOND CRYSTAL FORM==		==THE CRYSTAL STRUCTURE OF ANIONIC SALMON TRYPSIN IN A SECOND CRYSTAL FORM==
-	<StructureSection load='1bit' size='340' side='right' caption='[[1bit]], [[Resolution\|resolution]] 1.83Å' scene=''>	+	<StructureSection load='1bit' size='340' side='right'caption='[[1bit]], [[Resolution\|resolution]] 1.83Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1bit]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Atlantic_salmon Atlantic salmon]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1BIT OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1BIT FirstGlance]. <br>		<table><tr><td colspan='2'>[[1bit]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Atlantic_salmon Atlantic salmon]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1BIT OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1BIT FirstGlance]. <br>
Line 11:		Line 11:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/bi/1bit_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/bi/1bit_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
Line 26:		Line 26:
	</div>		</div>
	<div class="pdbe-citations 1bit" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 1bit" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[Trypsin\|Trypsin]]
	== References ==		== References ==
	<references/>		<references/>
Line 31:		Line 34:
	</StructureSection>		</StructureSection>
	[[Category: Atlantic salmon]]		[[Category: Atlantic salmon]]
		+	[[Category: Large Structures]]
	[[Category: Berglund, G I]]		[[Category: Berglund, G I]]
	[[Category: Serine proteinase]]		[[Category: Serine proteinase]]

OCA at 10:51, 8 November 2017

OCA — Wed, 08 Nov 2017 10:51:40 GMT

←Older revision		Revision as of 10:51, 8 November 2017
Line 1:		Line 1:
		+
	==THE CRYSTAL STRUCTURE OF ANIONIC SALMON TRYPSIN IN A SECOND CRYSTAL FORM==		==THE CRYSTAL STRUCTURE OF ANIONIC SALMON TRYPSIN IN A SECOND CRYSTAL FORM==
	<StructureSection load='1bit' size='340' side='right' caption='[[1bit]], [[Resolution\|resolution]] 1.83Å' scene=''>		<StructureSection load='1bit' size='340' side='right' caption='[[1bit]], [[Resolution\|resolution]] 1.83Å' scene=''>
Line 4:		Line 5:
	<table><tr><td colspan='2'>[[1bit]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Atlantic_salmon Atlantic salmon]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1BIT OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1BIT FirstGlance]. <br>		<table><tr><td colspan='2'>[[1bit]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Atlantic_salmon Atlantic salmon]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1BIT OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1BIT FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BEN:BENZAMIDINE'>BEN</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BEN:BENZAMIDINE'>BEN</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1bit FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1bit OCA], [http://pdbe.org/1bit PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1bit RCSB], [http://www.ebi.ac.uk/pdbsum/1bit PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1bit FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1bit OCA], [http://pdbe.org/1bit PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1bit RCSB], [http://www.ebi.ac.uk/pdbsum/1bit PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1bit ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 25:		Line 26:
	</div>		</div>
	<div class="pdbe-citations 1bit" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 1bit" style="background-color:#fffaf0;"></div>
-
-	==See Also==
-	*[[Trypsin\|Trypsin]]
	== References ==		== References ==
	<references/>		<references/>

OCA at 03:25, 7 February 2016

OCA — Sun, 07 Feb 2016 03:25:59 GMT

←Older revision		Revision as of 03:25, 7 February 2016
Line 14:		Line 14:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1bit ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 21:14, 9 September 2015

OCA — Wed, 09 Sep 2015 21:14:17 GMT

←Older revision		Revision as of 21:14, 9 September 2015
Line 2:		Line 2:
	<StructureSection load='1bit' size='340' side='right' caption='[[1bit]], [[Resolution\|resolution]] 1.83Å' scene=''>		<StructureSection load='1bit' size='340' side='right' caption='[[1bit]], [[Resolution\|resolution]] 1.83Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1bit]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Salmo_salar Salmo salar~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1BIT OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1BIT FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1bit]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Atlantic_salmon Atlantic salmon]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1BIT OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1BIT FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BEN:BENZAMIDINE'>BEN</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BEN:BENZAMIDINE'>BEN</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1bit FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1bit OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1bit RCSB], [http://www.ebi.ac.uk/pdbsum/1bit PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1bit FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1bit OCA], [http://pdbe.org/1bit PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1bit RCSB], [http://www.ebi.ac.uk/pdbsum/1bit PDBsum]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 24:		Line 24:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 1bit" style="background-color:#fffaf0;"></div>

	==See Also==		==See Also==
Line 31:		Line 32:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Salmo salar~~]]	+	[[Category: Atlantic salmon]]
	[[Category: Berglund, G I]]		[[Category: Berglund, G I]]
	[[Category: Serine proteinase]]		[[Category: Serine proteinase]]

OCA at 09:13, 22 December 2014

OCA — Mon, 22 Dec 2014 09:13:30 GMT

←Older revision		Revision as of 09:13, 22 December 2014
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1bit]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Salmo_salar Salmo salar]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1BIT OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1BIT FirstGlance]. <br>		<table><tr><td colspan='2'>[[1bit]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Salmo_salar Salmo salar]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1BIT OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1BIT FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BEN:BENZAMIDINE'>BEN</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BEN:BENZAMIDINE'>BEN</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1bit FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1bit OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1bit RCSB], [http://www.ebi.ac.uk/pdbsum/1bit PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1bit FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1bit OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1bit RCSB], [http://www.ebi.ac.uk/pdbsum/1bit PDBsum]</span></td></tr>
-	<table>	+	</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 32:		Line 32:
	</StructureSection>		</StructureSection>
	[[Category: Salmo salar]]		[[Category: Salmo salar]]
-	[[Category: Berglund, G I.]]	+	[[Category: Berglund, G I]]
	[[Category: Serine proteinase]]		[[Category: Serine proteinase]]

OCA at 09:43, 13 August 2014

OCA — Wed, 13 Aug 2014 09:43:07 GMT

←Older revision		Revision as of 09:43, 13 August 2014
Line 1:		Line 1:
-	[[~~Image~~:1bit.~~png\|left~~\|200px]]	+	==THE CRYSTAL STRUCTURE OF ANIONIC SALMON TRYPSIN IN A SECOND CRYSTAL FORM==
		+	<StructureSection load='1bit' size='340' side='right' caption='[[1bit]], [[Resolution\|resolution]] 1.83Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[1bit]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Salmo_salar Salmo salar]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1BIT OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1BIT FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BEN:BENZAMIDINE'>BEN</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene><br>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1bit FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1bit OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1bit RCSB], [http://www.ebi.ac.uk/pdbsum/1bit PDBsum]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/bi/1bit_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Anionic salmon trypsin in a second crystal form (ST-IIB) has been refined at 1.83 A, resolution. The crystals are orthorhombic and belong to space group P2(1)2(1)2 with lattice parameters a = 77.09, b = 82.33 and c = 31.16 A. The present structure has been compared to salmon trypsin as it appears in a previously reported crystal form (ST-IIA) with cell dimensions a = 61.95, b = 84.33 and c = 39.11 A [Smalas & Hordvik (1993). Acta Cryst. D49, 318-330]. The presence of a sulfate group involved in several hydrogen bonds to active-site residues, and the location of an additional benzamidine site in the crystal lattice, are the most striking differences between the present and the previous structure. Superposition of main-chain atoms in the two structures give an overall r.m.s. difference of 0.26 A, with the main differences located to areas with different molecular packing. The overall coordinate error is estimated to be between 0.20 and 0.25 A, by the method of Luzzati.

-	~~{{STRUCTURE_1bit\| PDB=1bit \| SCENE= }}~~	+	Structure of anionic salmon trypsin in a second crystal form.,Berglund GI, Smalas AO, Hordvik A, Willassen NP Acta Crystallogr D Biol Crystallogr. 1995 Sep 1;51(Pt 5):725-30. PMID:15299802<ref>PMID:15299802</ref>

-	~~===THE CRYSTAL STRUCTURE OF ANIONIC SALMON TRYPSIN IN A SECOND CRYSTAL FORM===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_15299802}}~~	+
-		+
-	~~==About this Structure==~~	+
-	~~[[1bit]] is~~ a ~~1 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org/wiki/Salmo_salar Salmo salar]~~. ~~Full crystallographic information is available from [http:~~/~~/oca.weizmann.ac.il/oca-bin/ocashort?id=1BIT OCA].~~	+

	==See Also==		==See Also==
	*[[Trypsin\|Trypsin]]		*[[Trypsin\|Trypsin]]
-		+	== References ==
-	==~~Reference~~==	+	<references/>
-	<~~ref group="xtra">PMID:015299802<~~/~~ref~~><~~references group="xtra"~~/>	+	__TOC__
		+	</StructureSection>
	[[Category: Salmo salar]]		[[Category: Salmo salar]]
	[[Category: Berglund, G I.]]		[[Category: Berglund, G I.]]
	[[Category: Serine proteinase]]		[[Category: Serine proteinase]]

OCA at 05:27, 20 October 2012

OCA — Sat, 20 Oct 2012 05:27:45 GMT

←Older revision		Revision as of 05:27, 20 October 2012
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	==About this Structure==		==About this Structure==
-	[[1bit]] is a 1 chain structure ~~of [[Trypsin]]~~ with sequence from [http://en.wikipedia.org/wiki/Salmo_salar Salmo salar]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1BIT OCA].	+	[[1bit]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Salmo_salar Salmo salar]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1BIT OCA].

	==See Also==		==See Also==

OCA: Protected "1bit" [edit=sysop:move=sysop]

OCA — Wed, 25 Jul 2012 10:06:36 GMT

Protected "1bit" [edit=sysop:move=sysop]

←Older revision

Revision as of 10:06, 25 July 2012