1byr - Revision history

OCA at 23:22, 27 December 2023

OCA — Wed, 27 Dec 2023 23:22:40 GMT

←Older revision		Revision as of 23:22, 27 December 2023
Line 3:		Line 3:
	<StructureSection load='1byr' size='340' side='right'caption='[[1byr]], [[Resolution\|resolution]] 2.00Å' scene=''>		<StructureSection load='1byr' size='340' side='right'caption='[[1byr]], [[Resolution\|resolution]] 2.00Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1byr]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1BYR OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1BYR FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1byr]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Salmonella_enterica_subsp._enterica_serovar_Typhimurium Salmonella enterica subsp. enterica serovar Typhimurium]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1BYR OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1BYR FirstGlance]. <br>
-	</td></tr><tr id='~~related~~'><td class="sblockLbl"><b>[[~~Related_structure~~\|~~Related~~:]]</b></td><td class="sblockDat"~~><div style~~=~~'overflow: auto; max~~-~~height: 3em;'>~~[[~~1bys~~\|~~1bys~~]]~~</div>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2Å</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1byr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1byr OCA], [https://pdbe.org/1byr PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1byr RCSB], [https://www.ebi.ac.uk/pdbsum/1byr PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1byr ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1byr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1byr OCA], [https://pdbe.org/1byr PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1byr RCSB], [https://www.ebi.ac.uk/pdbsum/1byr PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1byr ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/Q46707_ECOLX Q46707_ECOLX]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 31:		Line 33:
	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Dixon, J E~~]]	+	[[Category: Salmonella enterica subsp. enterica serovar Typhimurium]]
-	[[Category: ~~Stuckey, J A~~]]	+	[[Category: Dixon JE]]
-	[[Category: ~~Endonuclease]]~~	+	[[Category: Stuckey JA]]
-	~~[[Category: Phosphodiesterase~~]]	+

OCA at 15:12, 3 March 2021

OCA — Wed, 03 Mar 2021 15:12:31 GMT

←Older revision		Revision as of 15:12, 3 March 2021
Line 3:		Line 3:
	<StructureSection load='1byr' size='340' side='right'caption='[[1byr]], [[Resolution\|resolution]] 2.00Å' scene=''>		<StructureSection load='1byr' size='340' side='right'caption='[[1byr]], [[Resolution\|resolution]] 2.00Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1byr]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1BYR OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1BYR FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1byr]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1BYR OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1BYR FirstGlance]. <br>
-	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1bys\|1bys]]</td></tr>	+	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1bys\|1bys]]</div></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1byr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1byr OCA], [~~http~~://pdbe.org/1byr PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=1byr RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/1byr PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=1byr ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1byr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1byr OCA], [https://pdbe.org/1byr PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1byr RCSB], [https://www.ebi.ac.uk/pdbsum/1byr PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1byr ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==

OCA at 07:21, 29 May 2019

OCA — Wed, 29 May 2019 07:21:47 GMT

←Older revision		Revision as of 07:21, 29 May 2019
Line 1:		Line 1:

	==CRYSTAL STRUCTURE OF A PHOSPHOLIPASE D FAMILY MEMBER, NUC FROM SALMONELLA TYPHIMURIUM==		==CRYSTAL STRUCTURE OF A PHOSPHOLIPASE D FAMILY MEMBER, NUC FROM SALMONELLA TYPHIMURIUM==
-	<StructureSection load='1byr' size='340' side='right' caption='[[1byr]], [[Resolution\|resolution]] 2.00Å' scene=''>	+	<StructureSection load='1byr' size='340' side='right'caption='[[1byr]], [[Resolution\|resolution]] 2.00Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1byr]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1BYR OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1BYR FirstGlance]. <br>		<table><tr><td colspan='2'>[[1byr]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1BYR OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1BYR FirstGlance]. <br>
Line 11:		Line 11:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/by/1byr_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/by/1byr_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
Line 30:		Line 30:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
	[[Category: Dixon, J E]]		[[Category: Dixon, J E]]
	[[Category: Stuckey, J A]]		[[Category: Stuckey, J A]]
	[[Category: Endonuclease]]		[[Category: Endonuclease]]
	[[Category: Phosphodiesterase]]		[[Category: Phosphodiesterase]]

OCA at 11:08, 24 August 2017

OCA — Thu, 24 Aug 2017 11:08:21 GMT

←Older revision		Revision as of 11:08, 24 August 2017
Line 1:		Line 1:
		+
	==CRYSTAL STRUCTURE OF A PHOSPHOLIPASE D FAMILY MEMBER, NUC FROM SALMONELLA TYPHIMURIUM==		==CRYSTAL STRUCTURE OF A PHOSPHOLIPASE D FAMILY MEMBER, NUC FROM SALMONELLA TYPHIMURIUM==
	<StructureSection load='1byr' size='340' side='right' caption='[[1byr]], [[Resolution\|resolution]] 2.00Å' scene=''>		<StructureSection load='1byr' size='340' side='right' caption='[[1byr]], [[Resolution\|resolution]] 2.00Å' scene=''>
Line 4:		Line 5:
	<table><tr><td colspan='2'>[[1byr]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1BYR OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1BYR FirstGlance]. <br>		<table><tr><td colspan='2'>[[1byr]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1BYR OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1BYR FirstGlance]. <br>
	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1bys\|1bys]]</td></tr>		</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1bys\|1bys]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1byr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1byr OCA], [http://pdbe.org/1byr PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1byr RCSB], [http://www.ebi.ac.uk/pdbsum/1byr PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1byr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1byr OCA], [http://pdbe.org/1byr PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1byr RCSB], [http://www.ebi.ac.uk/pdbsum/1byr PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1byr ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 14:		Line 15:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1byr ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 17:45, 11 September 2015

OCA — Fri, 11 Sep 2015 17:45:51 GMT

←Older revision		Revision as of 17:45, 11 September 2015
Line 2:		Line 2:
	<StructureSection load='1byr' size='340' side='right' caption='[[1byr]], [[Resolution\|resolution]] 2.00Å' scene=''>		<StructureSection load='1byr' size='340' side='right' caption='[[1byr]], [[Resolution\|resolution]] 2.00Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1byr]] is a 1 chain structure ~~with sequence from [http://en.wikipedia.org/wiki/Salmonella_enterica_subsp._enterica_serovar_typhimurium Salmonella enterica subsp. enterica serovar typhimurium]~~. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1BYR OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1BYR FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1byr]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1BYR OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1BYR FirstGlance]. <br>
	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1bys\|1bys]]</td></tr>		</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1bys\|1bys]]</td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">NUC ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=90371 Salmonella enterica subsp. enterica serovar Typhimurium])</td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1byr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1byr OCA], [http://pdbe.org/1byr PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1byr RCSB], [http://www.ebi.ac.uk/pdbsum/1byr PDBsum]</span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1byr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1byr OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1byr RCSB], [http://www.ebi.ac.uk/pdbsum/1byr PDBsum]</span></td></tr>	+
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 25:		Line 24:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 1byr" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Salmonella enterica subsp. enterica serovar typhimurium]]
	[[Category: Dixon, J E]]		[[Category: Dixon, J E]]
	[[Category: Stuckey, J A]]		[[Category: Stuckey, J A]]
	[[Category: Endonuclease]]		[[Category: Endonuclease]]
	[[Category: Phosphodiesterase]]		[[Category: Phosphodiesterase]]

OCA at 10:00, 22 December 2014

OCA — Mon, 22 Dec 2014 10:00:56 GMT

←Older revision		Revision as of 10:00, 22 December 2014
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1byr]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Salmonella_enterica_subsp._enterica_serovar_typhimurium Salmonella enterica subsp. enterica serovar typhimurium]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1BYR OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1BYR FirstGlance]. <br>		<table><tr><td colspan='2'>[[1byr]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Salmonella_enterica_subsp._enterica_serovar_typhimurium Salmonella enterica subsp. enterica serovar typhimurium]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1BYR OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1BYR FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1bys\|1bys]]</td></tr>	+	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1bys\|1bys]]</td></tr>
-	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">NUC ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=90371 Salmonella enterica subsp. enterica serovar Typhimurium])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">NUC ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=90371 Salmonella enterica subsp. enterica serovar Typhimurium])</td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1byr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1byr OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1byr RCSB], [http://www.ebi.ac.uk/pdbsum/1byr PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1byr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1byr OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1byr RCSB], [http://www.ebi.ac.uk/pdbsum/1byr PDBsum]</span></td></tr>
-	<table>	+	</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 30:		Line 30:
	</StructureSection>		</StructureSection>
	[[Category: Salmonella enterica subsp. enterica serovar typhimurium]]		[[Category: Salmonella enterica subsp. enterica serovar typhimurium]]
-	[[Category: Dixon, J E.]]	+	[[Category: Dixon, J E]]
-	[[Category: Stuckey, J A.]]	+	[[Category: Stuckey, J A]]
	[[Category: Endonuclease]]		[[Category: Endonuclease]]
	[[Category: Phosphodiesterase]]		[[Category: Phosphodiesterase]]

OCA at 09:36, 13 August 2014

OCA — Wed, 13 Aug 2014 09:36:10 GMT

←Older revision		Revision as of 09:36, 13 August 2014
Line 1:		Line 1:
-	[[~~Image:~~1byr.~~png~~\|~~left~~\|200px]]	+	==CRYSTAL STRUCTURE OF A PHOSPHOLIPASE D FAMILY MEMBER, NUC FROM SALMONELLA TYPHIMURIUM==
		+	<StructureSection load='1byr' size='340' side='right' caption='[[1byr]], [[Resolution\|resolution]] 2.00Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[1byr]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Salmonella_enterica_subsp._enterica_serovar_typhimurium Salmonella enterica subsp. enterica serovar typhimurium]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1BYR OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1BYR FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1bys\|1bys]]</td></tr>
		+	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">NUC ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=90371 Salmonella enterica subsp. enterica serovar Typhimurium])</td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1byr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1byr OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1byr RCSB], [http://www.ebi.ac.uk/pdbsum/1byr PDBsum]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/by/1byr_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	The first crystal structure of a phospholipase D (PLD) family member has been determined at 2.0 A resolution. The PLD superfamily is defined by a common sequence motif, HxK(x)4D(x)6GSxN, and includes enzymes involved in signal transduction, lipid biosynthesis, endonucleases and open reading frames in pathogenic viruses and bacteria. The crystal structure suggests that residues from two sequence motifs form a single active site. A histidine residue from one motif acts as a nucleophile in the catalytic mechanism, forming a phosphoenzyme intermediate, whereas a histidine residue from the other motif appears to function as a general acid in the cleavage of the phosphodiester bond. The structure suggests that the conserved lysine residues are involved in phosphate binding. Large-scale genomic sequencing revealed that there are many PLD family members. Our results suggest that all of these proteins may possess a common structure and catalytic mechanism.

-	~~{{STRUCTURE_1byr\| PDB=1byr \| SCENE= }}~~	+	Crystal structure of a phospholipase D family member.,Stuckey JA, Dixon JE Nat Struct Biol. 1999 Mar;6(3):278-84. PMID:10074947<ref>PMID:10074947</ref>

-	~~===CRYSTAL STRUCTURE OF A PHOSPHOLIPASE D FAMILY MEMBER~~, ~~NUC FROM SALMONELLA TYPHIMURIUM===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_10074947}}~~	+	== References ==
-		+	<references/>
-	~~==About this Structure==~~	+	__TOC__
-	~~[[1byr]] is~~ a ~~1 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org/wiki/Salmonella_enterica_subsp~~.~~_enterica_serovar_typhimurium Salmonella enterica subsp. enterica serovar typhimurium]. Full crystallographic information is available from [http:~~/~~/oca.weizmann.ac.il/oca-bin/ocashort?id=1BYR OCA].~~	+	</StructureSection>
-		+
-	==~~Reference~~==	+
-	<~~ref group="xtra">PMID:010074947<~~/~~ref~~><~~references group="xtra"~~/>	+
	[[Category: Salmonella enterica subsp. enterica serovar typhimurium]]		[[Category: Salmonella enterica subsp. enterica serovar typhimurium]]
	[[Category: Dixon, J E.]]		[[Category: Dixon, J E.]]

OCA: Protected "1byr" [edit=sysop:move=sysop]

OCA — Sun, 21 Oct 2012 20:31:35 GMT

Protected "1byr" [edit=sysop:move=sysop]

←Older revision

Revision as of 20:31, 21 October 2012

OCA at 20:31, 21 October 2012

OCA — Sun, 21 Oct 2012 20:31:32 GMT

←Older revision		Revision as of 20:31, 21 October 2012
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-	{{Seed}}
	[[Image:1byr.png\|left\|200px]]		[[Image:1byr.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_1byr", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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	{{STRUCTURE_1byr\| PDB=1byr \| SCENE= }}		{{STRUCTURE_1byr\| PDB=1byr \| SCENE= }}

	===CRYSTAL STRUCTURE OF A PHOSPHOLIPASE D FAMILY MEMBER, NUC FROM SALMONELLA TYPHIMURIUM===		===CRYSTAL STRUCTURE OF A PHOSPHOLIPASE D FAMILY MEMBER, NUC FROM SALMONELLA TYPHIMURIUM===

-
-	<!--
-	The line below this paragraph, {{ABSTRACT_PUBMED_10074947}}, adds the Publication Abstract to the page
-	(as it appears on PubMed at http://www.pubmed.gov), where 10074947 is the PubMed ID number.
-	-->
	{{ABSTRACT_PUBMED_10074947}}		{{ABSTRACT_PUBMED_10074947}}

	==About this Structure==		==About this Structure==
-	~~1BYR~~ is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/~~Salmonella_typhimurium~~ Salmonella typhimurium]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1BYR OCA].	+	[[1byr]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Salmonella_enterica_subsp._enterica_serovar_typhimurium Salmonella enterica subsp. enterica serovar typhimurium]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1BYR OCA].

	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~10074947~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:010074947</ref><references group="xtra"/>
-	[[Category: Salmonella typhimurium]]	+	[[Category: Salmonella enterica subsp. enterica serovar typhimurium]]
	[[Category: Dixon, J E.]]		[[Category: Dixon, J E.]]
	[[Category: Stuckey, J A.]]		[[Category: Stuckey, J A.]]
	[[Category: Endonuclease]]		[[Category: Endonuclease]]
	[[Category: Phosphodiesterase]]		[[Category: Phosphodiesterase]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Feb 18 05:00:21 2009''

OCA at 03:00, 18 February 2009

OCA — Wed, 18 Feb 2009 03:00:22 GMT

←Older revision		Revision as of 03:00, 18 February 2009
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	==About this Structure==		==About this Structure==
-	1BYR is a ~~[[Single protein]]~~ structure of sequence from [http://en.wikipedia.org/wiki/Salmonella_typhimurium Salmonella typhimurium]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1BYR OCA].	+	1BYR is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Salmonella_typhimurium Salmonella typhimurium]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1BYR OCA].

	==Reference==		==Reference==
-	~~Crystal structure of a phospholipase D family member., Stuckey JA, Dixon JE, Nat Struct Biol. 1999 Mar;6(3):278-84.~~ PMID:~~[http:~~//~~www.ncbi.nlm.nih.gov/pubmed/10074947 10074947]~~	+	<ref group="xtra">PMID:10074947</ref><references group="xtra"/>
	[[Category: Salmonella typhimurium]]		[[Category: Salmonella typhimurium]]
-	[[Category: Single protein]]
	[[Category: Dixon, J E.]]		[[Category: Dixon, J E.]]
	[[Category: Stuckey, J A.]]		[[Category: Stuckey, J A.]]
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	[[Category: Phosphodiesterase]]		[[Category: Phosphodiesterase]]

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on ~~Mon Jun 30 19:58~~:00 ~~2008~~''	+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Feb 18 05:00:21 2009''