1c75 - Revision history

OCA at 23:24, 27 December 2023

OCA — Wed, 27 Dec 2023 23:24:25 GMT

←Older revision		Revision as of 23:24, 27 December 2023
Line 4:		Line 4:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1c75]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Sporosarcina_pasteurii Sporosarcina pasteurii]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1b7c 1b7c]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1C75 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1C75 FirstGlance]. <br>		<table><tr><td colspan='2'>[[1c75]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Sporosarcina_pasteurii Sporosarcina pasteurii]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1b7c 1b7c]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1C75 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1C75 FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=HEC:HEME+C'>HEC</scene></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 0.97Å</td></tr>
		+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=HEC:HEME+C'>HEC</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1c75 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1c75 OCA], [https://pdbe.org/1c75 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1c75 RCSB], [https://www.ebi.ac.uk/pdbsum/1c75 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1c75 ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1c75 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1c75 OCA], [https://pdbe.org/1c75 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1c75 RCSB], [https://www.ebi.ac.uk/pdbsum/1c75 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1c75 ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/CY553_SPOPA CY553_SPOPA]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 35:		Line 38:
	[[Category: Large Structures]]		[[Category: Large Structures]]
	[[Category: Sporosarcina pasteurii]]		[[Category: Sporosarcina pasteurii]]
-	[[Category: Benini, S]]	+	[[Category: Benini S]]
-	[[Category: Ciurli, S]]	+	[[Category: Ciurli S]]
-	[[Category: Rypniewski~~, W R~~]]	+	[[Category: Rypniewski WR]]
-	[[Category: Wilson~~, K S]]~~	+	[[Category: Wilson KS]]
-	~~[[Category: Ab initio]]~~	+
-	~~[[Category: Atomic resolution]]~~	+
-	~~[[Category: Bacillus pasteurii]]~~	+
-	~~[[Category: C-553]]~~	+
-	~~[[Category: Cytochrome]]~~	+
-	~~[[Category: Electron transport]]~~	+
-	~~[[Category: Heme~~]]	+

OCA at 14:47, 3 March 2021

OCA — Wed, 03 Mar 2021 14:47:58 GMT

←Older revision		Revision as of 14:47, 3 March 2021
Line 3:		Line 3:
	<StructureSection load='1c75' size='340' side='right'caption='[[1c75]], [[Resolution\|resolution]] 0.97Å' scene=''>		<StructureSection load='1c75' size='340' side='right'caption='[[1c75]], [[Resolution\|resolution]] 0.97Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1c75]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Sporosarcina_pasteurii Sporosarcina pasteurii]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1b7c 1b7c]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1C75 OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1C75 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1c75]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Sporosarcina_pasteurii Sporosarcina pasteurii]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1b7c 1b7c]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1C75 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1C75 FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=~~HEM~~:~~PROTOPORPHYRIN+IX+CONTAINING~~+FE'>~~HEM~~</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=HEC:HEME+C'>HEC</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1c75 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1c75 OCA], [~~http~~://pdbe.org/1c75 PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=1c75 RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/1c75 PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=1c75 ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1c75 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1c75 OCA], [https://pdbe.org/1c75 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1c75 RCSB], [https://www.ebi.ac.uk/pdbsum/1c75 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1c75 ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==

OCA at 06:31, 24 July 2019

OCA — Wed, 24 Jul 2019 06:31:53 GMT

←Older revision		Revision as of 06:31, 24 July 2019
Line 1:		Line 1:

	==0.97 A "AB INITIO" CRYSTAL STRUCTURE OF CYTOCHROME C-553 FROM BACILLUS PASTEURII==		==0.97 A "AB INITIO" CRYSTAL STRUCTURE OF CYTOCHROME C-553 FROM BACILLUS PASTEURII==
-	<StructureSection load='1c75' size='340' side='right' caption='[[1c75]], [[Resolution\|resolution]] 0.97Å' scene=''>	+	<StructureSection load='1c75' size='340' side='right'caption='[[1c75]], [[Resolution\|resolution]] 0.97Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1c75]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Sporosarcina_pasteurii Sporosarcina pasteurii]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1b7c 1b7c]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1C75 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1C75 FirstGlance]. <br>		<table><tr><td colspan='2'>[[1c75]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Sporosarcina_pasteurii Sporosarcina pasteurii]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1b7c 1b7c]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1C75 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1C75 FirstGlance]. <br>
Line 11:		Line 11:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/c7/1c75_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/c7/1c75_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
Line 26:		Line 26:
	</div>		</div>
	<div class="pdbe-citations 1c75" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 1c75" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[Cytochrome C 3D structures\|Cytochrome C 3D structures]]
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
	[[Category: Sporosarcina pasteurii]]		[[Category: Sporosarcina pasteurii]]
	[[Category: Benini, S]]		[[Category: Benini, S]]

OCA at 08:07, 29 November 2017

OCA — Wed, 29 Nov 2017 08:07:31 GMT

←Older revision		Revision as of 08:07, 29 November 2017
Line 1:		Line 1:
		+
	==0.97 A "AB INITIO" CRYSTAL STRUCTURE OF CYTOCHROME C-553 FROM BACILLUS PASTEURII==		==0.97 A "AB INITIO" CRYSTAL STRUCTURE OF CYTOCHROME C-553 FROM BACILLUS PASTEURII==
	<StructureSection load='1c75' size='340' side='right' caption='[[1c75]], [[Resolution\|resolution]] 0.97Å' scene=''>		<StructureSection load='1c75' size='340' side='right' caption='[[1c75]], [[Resolution\|resolution]] 0.97Å' scene=''>
Line 4:		Line 5:
	<table><tr><td colspan='2'>[[1c75]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Sporosarcina_pasteurii Sporosarcina pasteurii]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1b7c 1b7c]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1C75 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1C75 FirstGlance]. <br>		<table><tr><td colspan='2'>[[1c75]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Sporosarcina_pasteurii Sporosarcina pasteurii]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1b7c 1b7c]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1C75 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1C75 FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1c75 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1c75 OCA], [http://pdbe.org/1c75 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1c75 RCSB], [http://www.ebi.ac.uk/pdbsum/1c75 PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1c75 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1c75 OCA], [http://pdbe.org/1c75 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1c75 RCSB], [http://www.ebi.ac.uk/pdbsum/1c75 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1c75 ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 25:		Line 26:
	</div>		</div>
	<div class="pdbe-citations 1c75" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 1c75" style="background-color:#fffaf0;"></div>
-
-	==See Also==
-	*[[Cytochrome c\|Cytochrome c]]
	== References ==		== References ==
	<references/>		<references/>

OCA at 02:36, 10 February 2016

OCA — Wed, 10 Feb 2016 02:36:33 GMT

←Older revision		Revision as of 02:36, 10 February 2016
Line 14:		Line 14:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1c75 ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 04:32, 11 September 2015

OCA — Fri, 11 Sep 2015 04:32:36 GMT

←Older revision		Revision as of 04:32, 11 September 2015
Line 4:		Line 4:
	<table><tr><td colspan='2'>[[1c75]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Sporosarcina_pasteurii Sporosarcina pasteurii]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1b7c 1b7c]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1C75 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1C75 FirstGlance]. <br>		<table><tr><td colspan='2'>[[1c75]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Sporosarcina_pasteurii Sporosarcina pasteurii]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1b7c 1b7c]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1C75 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1C75 FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1c75 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1c75 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1c75 RCSB], [http://www.ebi.ac.uk/pdbsum/1c75 PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1c75 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1c75 OCA], [http://pdbe.org/1c75 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1c75 RCSB], [http://www.ebi.ac.uk/pdbsum/1c75 PDBsum]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 24:		Line 24:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 1c75" style="background-color:#fffaf0;"></div>

	==See Also==		==See Also==

OCA at 08:33, 22 December 2014

OCA — Mon, 22 Dec 2014 08:33:49 GMT

←Older revision		Revision as of 08:33, 22 December 2014
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1c75]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Sporosarcina_pasteurii Sporosarcina pasteurii]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1b7c 1b7c]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1C75 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1C75 FirstGlance]. <br>		<table><tr><td colspan='2'>[[1c75]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Sporosarcina_pasteurii Sporosarcina pasteurii]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1b7c 1b7c]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1C75 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1C75 FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene></td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1c75 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1c75 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1c75 RCSB], [http://www.ebi.ac.uk/pdbsum/1c75 PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1c75 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1c75 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1c75 RCSB], [http://www.ebi.ac.uk/pdbsum/1c75 PDBsum]</span></td></tr>
-	<table>	+	</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 32:		Line 32:
	</StructureSection>		</StructureSection>
	[[Category: Sporosarcina pasteurii]]		[[Category: Sporosarcina pasteurii]]
-	[[Category: Benini, S.]]	+	[[Category: Benini, S]]
-	[[Category: Ciurli, S.]]	+	[[Category: Ciurli, S]]
-	[[Category: Rypniewski, W R.]]	+	[[Category: Rypniewski, W R]]
-	[[Category: Wilson, K S.]]	+	[[Category: Wilson, K S]]
	[[Category: Ab initio]]		[[Category: Ab initio]]
	[[Category: Atomic resolution]]		[[Category: Atomic resolution]]

OCA at 16:59, 20 August 2014

OCA — Wed, 20 Aug 2014 16:59:49 GMT

←Older revision		Revision as of 16:59, 20 August 2014
Line 1:		Line 1:
-	[[~~Image~~:1c75.~~png\|left~~\|200px]]	+	==0.97 A "AB INITIO" CRYSTAL STRUCTURE OF CYTOCHROME C-553 FROM BACILLUS PASTEURII==
		+	<StructureSection load='1c75' size='340' side='right' caption='[[1c75]], [[Resolution\|resolution]] 0.97Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[1c75]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Sporosarcina_pasteurii Sporosarcina pasteurii]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1b7c 1b7c]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1C75 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1C75 FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene><br>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1c75 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1c75 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1c75 RCSB], [http://www.ebi.ac.uk/pdbsum/1c75 PDBsum]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/c7/1c75_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	This article reports the first X-ray structure of the soluble form of a c-type cytochrome isolated from a Gram-positive bacterium. Bacillus pasteurii cytochrome c(553), characterized by a low reduction potential and by a low sequence homology with cytochromes from Gram-negative bacteria or eukaryotes, is a useful case study for understanding the structure-function relationships for this class of electron-transfer proteins. Diffraction data on a single crystal of cytochrome c(553) were obtained using synchrotron radiation at 100 K. The structure was determined at 0.97-A resolution using ab initio phasing and independently at 1.70 A in an MAD experiment. In both experiments, the structure solution exploited the presence of a single Fe atom as anomalous scatterer in the protein. For the 0.97-A data, the phasing was based on a single data set. This is the most precise structure of a heme protein to date. The crystallized cytochrome c(553) contains only 71 of the 92 residues expected from the intact protein sequence, lacking the first 21 amino acids at the N-terminus. This feature is consistent with previous evidence that this tail, responsible for anchoring the protein to the cytoplasm membrane, is easily cleaved off during the purification procedure. The heme prosthetic group in B. pasteurii cytochrome c(553) is surrounded by three alpha-helices in a compact arrangement. The largely exposed c-type heme group features a His-Met axial coordination of the Fe(III) ion. The protein is characterized by a very asymmetric charge distribution, with the exposed heme edge located on a surface patch devoid of net charges. A structural search of a representative set of protein structures reveals that B. pasteurii cytochrome c(553) is most similar to Pseudomonas cytochromes c(551), followed by cytochromes c(6), Desulfovibrio cytochrome c(553), cytochromes c(552) from thermophiles, and cytochromes c from eukaryotes. Notwithstanding a low sequence homology, a structure-based alignment of these cytochromes shows conservation of three helical regions, with different additional secondary structure motifs characterizing each protein. In B. pasteurii cytochrome c(553), these motifs are represented by the shortest interhelix connecting fragments observed for this group of proteins. The possible relationships between heme solvent accessibility and the electrochemical reduction potential are discussed.

-	~~{{STRUCTURE_1c75\| PDB=1c75 \| SCENE= }}~~	+	Crystal structure of oxidized Bacillus pasteurii cytochrome c553 at 0.97-A resolution.,Benini S, Gonzalez A, Rypniewski WR, Wilson KS, Van Beeumen JJ, Ciurli S Biochemistry. 2000 Oct 31;39(43):13115-26. PMID:11052663<ref>PMID:11052663</ref>

-	~~===0.97 A "AB INITIO" CRYSTAL STRUCTURE OF CYTOCHROME C-553 FROM BACILLUS PASTEURII===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_11052663}}~~	+
-		+
-	~~==About this Structure==~~	+
-	~~[[1c75]] is~~ a ~~1 chain structure with sequence from [http://en.wikipedia.org/wiki/Sporosarcina_pasteurii Sporosarcina pasteurii]. This structure supersedes~~ the ~~now removed PDB entry [http://oca~~.~~weizmann~~.ac.il/~~oca-bin/send-pdb?obs=1&id=1b7c 1b7c]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1C75 OCA].~~	+

	==See Also==		==See Also==
	*[[Cytochrome c\|Cytochrome c]]		*[[Cytochrome c\|Cytochrome c]]
-		+	== References ==
-	==~~Reference~~==	+	<references/>
-	<~~ref group="xtra">PMID:011052663<~~/~~ref~~><~~ref group="xtra">PMID:018754631</ref><references group="xtra"~~/>	+	__TOC__
		+	</StructureSection>
	[[Category: Sporosarcina pasteurii]]		[[Category: Sporosarcina pasteurii]]
	[[Category: Benini, S.]]		[[Category: Benini, S.]]

OCA at 16:01, 20 October 2012

OCA — Sat, 20 Oct 2012 16:01:49 GMT

←Older revision		Revision as of 16:01, 20 October 2012
Line 8:		Line 8:

	==About this Structure==		==About this Structure==
-	[[1c75]] is a 1 chain structure ~~of [[Cytochrome c]]~~ with sequence from [http://en.wikipedia.org/wiki/Sporosarcina_pasteurii Sporosarcina pasteurii]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1b7c 1b7c]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1C75 OCA].	+	[[1c75]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Sporosarcina_pasteurii Sporosarcina pasteurii]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1b7c 1b7c]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1C75 OCA].

	==See Also==		==See Also==

OCA at 20:21, 26 July 2012

OCA — Thu, 26 Jul 2012 20:21:27 GMT

←Older revision		Revision as of 20:21, 26 July 2012
Line 1:		Line 1:
	[[Image:1c75.png\|left\|200px]]		[[Image:1c75.png\|left\|200px]]

-	<!--
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-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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	{{STRUCTURE_1c75\| PDB=1c75 \| SCENE= }}		{{STRUCTURE_1c75\| PDB=1c75 \| SCENE= }}

	===0.97 A "AB INITIO" CRYSTAL STRUCTURE OF CYTOCHROME C-553 FROM BACILLUS PASTEURII===		===0.97 A "AB INITIO" CRYSTAL STRUCTURE OF CYTOCHROME C-553 FROM BACILLUS PASTEURII===

-
-	<!--
-	The line below this paragraph, {{ABSTRACT_PUBMED_11052663}}, adds the Publication Abstract to the page
-	(as it appears on PubMed at http://www.pubmed.gov), where 11052663 is the PubMed ID number.
-	-->
	{{ABSTRACT_PUBMED_11052663}}		{{ABSTRACT_PUBMED_11052663}}

	==About this Structure==		==About this Structure==
-	[[1c75]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Sporosarcina_pasteurii Sporosarcina pasteurii]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1b7c 1b7c]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1C75 OCA].	+	[[1c75]] is a 1 chain structure of [[Cytochrome c]] with sequence from [http://en.wikipedia.org/wiki/Sporosarcina_pasteurii Sporosarcina pasteurii]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1b7c 1b7c]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1C75 OCA].
		+
		+	==See Also==
		+	*[[Cytochrome c\|Cytochrome c]]

	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~11052663~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:011052663</ref><ref group="xtra">PMID:018754631</ref><references group="xtra"/>
	[[Category: Sporosarcina pasteurii]]		[[Category: Sporosarcina pasteurii]]
	[[Category: Benini, S.]]		[[Category: Benini, S.]]
Line 28:		Line 20:
	[[Category: Rypniewski, W R.]]		[[Category: Rypniewski, W R.]]
	[[Category: Wilson, K S.]]		[[Category: Wilson, K S.]]
		+	[[Category: Ab initio]]
		+	[[Category: Atomic resolution]]
		+	[[Category: Bacillus pasteurii]]
		+	[[Category: C-553]]
		+	[[Category: Cytochrome]]
		+	[[Category: Electron transport]]
		+	[[Category: Heme]]