1c8n - Revision history

OCA at 05:49, 9 August 2023

OCA — Wed, 09 Aug 2023 05:49:46 GMT

←Older revision		Revision as of 05:49, 9 August 2023
Line 4:		Line 4:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1c8n]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Unidentified_tobacco_necrosis_virus Unidentified tobacco necrosis virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1C8N OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1C8N FirstGlance]. <br>		<table><tr><td colspan='2'>[[1c8n]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Unidentified_tobacco_necrosis_virus Unidentified tobacco necrosis virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1C8N OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1C8N FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.25Å</td></tr>
		+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1c8n FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1c8n OCA], [https://pdbe.org/1c8n PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1c8n RCSB], [https://www.ebi.ac.uk/pdbsum/1c8n PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1c8n ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1c8n FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1c8n OCA], [https://pdbe.org/1c8n PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1c8n RCSB], [https://www.ebi.ac.uk/pdbsum/1c8n PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1c8n ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/Q9IPS9_9TOMB Q9IPS9_9TOMB]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 32:		Line 35:
	[[Category: Large Structures]]		[[Category: Large Structures]]
	[[Category: Unidentified tobacco necrosis virus]]		[[Category: Unidentified tobacco necrosis virus]]
-	[[Category: Fukuyama, K]]	+	[[Category: Fukuyama K]]
-	[[Category: Oda, Y]]	+	[[Category: Oda Y]]
-	~~[[Category: Icosahedral virus]]~~	+
-	~~[[Category: Virus~~]]	+

OCA at 15:14, 3 March 2021

OCA — Wed, 03 Mar 2021 15:14:58 GMT

←Older revision		Revision as of 15:14, 3 March 2021
Line 3:		Line 3:
	<StructureSection load='1c8n' size='340' side='right'caption='[[1c8n]], [[Resolution\|resolution]] 2.25Å' scene=''>		<StructureSection load='1c8n' size='340' side='right'caption='[[1c8n]], [[Resolution\|resolution]] 2.25Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1c8n]] is a 3 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Unidentified_tobacco_necrosis_virus Unidentified tobacco necrosis virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1C8N OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1C8N FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1c8n]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Unidentified_tobacco_necrosis_virus Unidentified tobacco necrosis virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1C8N OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1C8N FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1c8n FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1c8n OCA], [~~http~~://pdbe.org/1c8n PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=1c8n RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/1c8n PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=1c8n ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1c8n FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1c8n OCA], [https://pdbe.org/1c8n PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1c8n RCSB], [https://www.ebi.ac.uk/pdbsum/1c8n PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1c8n ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==

OCA at 07:39, 29 May 2019

OCA — Wed, 29 May 2019 07:39:43 GMT

←Older revision		Revision as of 07:39, 29 May 2019
Line 1:		Line 1:

	==TOBACCO NECROSIS VIRUS==		==TOBACCO NECROSIS VIRUS==
-	<StructureSection load='1c8n' size='340' side='right' caption='[[1c8n]], [[Resolution\|resolution]] 2.25Å' scene=''>	+	<StructureSection load='1c8n' size='340' side='right'caption='[[1c8n]], [[Resolution\|resolution]] 2.25Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1c8n]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Unidentified_tobacco_necrosis_virus Unidentified tobacco necrosis virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1C8N OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1C8N FirstGlance]. <br>		<table><tr><td colspan='2'>[[1c8n]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Unidentified_tobacco_necrosis_virus Unidentified tobacco necrosis virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1C8N OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1C8N FirstGlance]. <br>
Line 11:		Line 11:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/c8/1c8n_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/c8/1c8n_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
Line 30:		Line 30:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
	[[Category: Unidentified tobacco necrosis virus]]		[[Category: Unidentified tobacco necrosis virus]]
	[[Category: Fukuyama, K]]		[[Category: Fukuyama, K]]

OCA at 11:20, 24 August 2017

OCA — Thu, 24 Aug 2017 11:20:02 GMT

←Older revision		Revision as of 11:20, 24 August 2017
Line 1:		Line 1:
		+
	==TOBACCO NECROSIS VIRUS==		==TOBACCO NECROSIS VIRUS==
	<StructureSection load='1c8n' size='340' side='right' caption='[[1c8n]], [[Resolution\|resolution]] 2.25Å' scene=''>		<StructureSection load='1c8n' size='340' side='right' caption='[[1c8n]], [[Resolution\|resolution]] 2.25Å' scene=''>
Line 4:		Line 5:
	<table><tr><td colspan='2'>[[1c8n]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Unidentified_tobacco_necrosis_virus Unidentified tobacco necrosis virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1C8N OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1C8N FirstGlance]. <br>		<table><tr><td colspan='2'>[[1c8n]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Unidentified_tobacco_necrosis_virus Unidentified tobacco necrosis virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1C8N OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1C8N FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1c8n FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1c8n OCA], [http://pdbe.org/1c8n PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1c8n RCSB], [http://www.ebi.ac.uk/pdbsum/1c8n PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1c8n FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1c8n OCA], [http://pdbe.org/1c8n PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1c8n RCSB], [http://www.ebi.ac.uk/pdbsum/1c8n PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1c8n ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 14:		Line 15:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1c8n ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 07:17, 11 September 2015

OCA — Fri, 11 Sep 2015 07:17:46 GMT

←Older revision		Revision as of 07:17, 11 September 2015
Line 4:		Line 4:
	<table><tr><td colspan='2'>[[1c8n]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Unidentified_tobacco_necrosis_virus Unidentified tobacco necrosis virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1C8N OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1C8N FirstGlance]. <br>		<table><tr><td colspan='2'>[[1c8n]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Unidentified_tobacco_necrosis_virus Unidentified tobacco necrosis virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1C8N OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1C8N FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1c8n FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1c8n OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1c8n RCSB], [http://www.ebi.ac.uk/pdbsum/1c8n PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1c8n FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1c8n OCA], [http://pdbe.org/1c8n PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1c8n RCSB], [http://www.ebi.ac.uk/pdbsum/1c8n PDBsum]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 24:		Line 24:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 1c8n" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>

OCA at 12:06, 22 December 2014

OCA — Mon, 22 Dec 2014 12:06:56 GMT

←Older revision		Revision as of 12:06, 22 December 2014
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1c8n]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Unidentified_tobacco_necrosis_virus Unidentified tobacco necrosis virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1C8N OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1C8N FirstGlance]. <br>		<table><tr><td colspan='2'>[[1c8n]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Unidentified_tobacco_necrosis_virus Unidentified tobacco necrosis virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1C8N OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1C8N FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1c8n FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1c8n OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1c8n RCSB], [http://www.ebi.ac.uk/pdbsum/1c8n PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1c8n FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1c8n OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1c8n RCSB], [http://www.ebi.ac.uk/pdbsum/1c8n PDBsum]</span></td></tr>
-	<table>	+	</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 29:		Line 29:
	</StructureSection>		</StructureSection>
	[[Category: Unidentified tobacco necrosis virus]]		[[Category: Unidentified tobacco necrosis virus]]
-	[[Category: Fukuyama, K.]]	+	[[Category: Fukuyama, K]]
-	[[Category: Oda, Y.]]	+	[[Category: Oda, Y]]
	[[Category: Icosahedral virus]]		[[Category: Icosahedral virus]]
	[[Category: Virus]]		[[Category: Virus]]

OCA at 17:11, 20 August 2014

OCA — Wed, 20 Aug 2014 17:11:20 GMT

←Older revision		Revision as of 17:11, 20 August 2014
Line 1:		Line 1:
-	[[~~Image~~:1c8n.~~png\|left~~\|200px]]	+	==TOBACCO NECROSIS VIRUS==
		+	<StructureSection load='1c8n' size='340' side='right' caption='[[1c8n]], [[Resolution\|resolution]] 2.25Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[1c8n]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Unidentified_tobacco_necrosis_virus Unidentified tobacco necrosis virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1C8N OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1C8N FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene><br>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1c8n FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1c8n OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1c8n RCSB], [http://www.ebi.ac.uk/pdbsum/1c8n PDBsum]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/c8/1c8n_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	The crystal structure of tobacco necrosis virus (TNV) has been determined by real-space averaging with 5-fold non-crystallographic symmetry, and refined to R=25.3 % for diffraction data to 2.25 A resolution. A total of 180 subunits form a T=3 virus shell with a diameter of about 280 A and a small protrusion at the 5-fold axis. In 276 amino acid residues, the respective amino terminal 86, 87 and 56 residues of the A, B and C subunits are disordered. No density for the RNA was found. The subunits have a "jelly roll" beta-barrel structure, as have the structures of the subunits of other spherical viruses. The tertiary and quaternary structures of TNV are, in particular, similar to those of southern bean mosaic virus, although they are classified in different groups. Invisible residues 1 to 56 with a high level of basic residues are considered to be located inside the particle. Sequence comparison of the coat proteins of several TNV strains showed that the sequences of the disordered segment diverge considerably as compared with those of the ordered segment, consistent with a small tertiary structural constraint being imposed on the N-terminal segment. Basic residues are localized on the subunit interfaces or inner surface of the capsid. Positive charges of the basic residues facing the interior, as well as those of the N-terminal segment, may neutralize the negative charge of the RNA inside. Five calcium ions per icosahedral asymmetric unit are located at the subunit interfaces; three are close to the exterior surface, the other two away from it. The environments of the first three are similar, and those of the other two sites are similar. These calcium ions are assumed to be responsible for the stabilization/transition of the quaternary structure of the shell. Three peptide segments ordered only in the C subunits are clustered around each 3-fold (quasi-6-fold) axis forming a beta-annulus, and may lead to quasi-equivalent interactions for the organization of the T=3 shell.

-	~~{{STRUCTURE_1c8n\| PDB=1c8n \| SCENE= }}~~	+	Crystal structure of tobacco necrosis virus at 2.25 A resolution.,Oda Y, Saeki K, Takahashi Y, Maeda T, Naitow H, Tsukihara T, Fukuyama K J Mol Biol. 2000 Jun 30;300(1):153-69. PMID:10864506<ref>PMID:10864506</ref>

-	~~===TOBACCO NECROSIS VIRUS===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_10864506}}~~	+	== References ==
-		+	<references/>
-	~~==About this Structure==~~	+	__TOC__
-	~~[[1c8n]] is~~ a ~~3 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org/wiki/Unidentified_tobacco_necrosis_virus Unidentified tobacco necrosis virus]~~. ~~Full crystallographic information is available from [http:~~/~~/oca.weizmann.ac.il/oca-bin/ocashort?id=1C8N OCA].~~	+	</StructureSection>
-		+
-	==~~Reference~~==	+
-	<~~ref group="xtra">PMID:010864506<~~/~~ref~~><~~references group="xtra"~~/>	+
	[[Category: Unidentified tobacco necrosis virus]]		[[Category: Unidentified tobacco necrosis virus]]
	[[Category: Fukuyama, K.]]		[[Category: Fukuyama, K.]]

OCA: Protected "1c8n" [edit=sysop:move=sysop]

OCA — Sun, 21 Oct 2012 20:49:22 GMT

Protected "1c8n" [edit=sysop:move=sysop]

←Older revision

Revision as of 20:49, 21 October 2012

OCA at 20:49, 21 October 2012

OCA — Sun, 21 Oct 2012 20:49:17 GMT

←Older revision		Revision as of 20:49, 21 October 2012
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	[[Image:1c8n.png\|left\|200px]]		[[Image:1c8n.png\|left\|200px]]

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	{{STRUCTURE_1c8n\| PDB=1c8n \| SCENE= }}		{{STRUCTURE_1c8n\| PDB=1c8n \| SCENE= }}

	===TOBACCO NECROSIS VIRUS===		===TOBACCO NECROSIS VIRUS===

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	{{ABSTRACT_PUBMED_10864506}}		{{ABSTRACT_PUBMED_10864506}}

	==About this Structure==		==About this Structure==
-	~~1C8N~~ is a 3 ~~chains~~ structure ~~of sequences~~ from [http://en.wikipedia.org/wiki/Unidentified_tobacco_necrosis_virus Unidentified tobacco necrosis virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1C8N OCA].	+	[[1c8n]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Unidentified_tobacco_necrosis_virus Unidentified tobacco necrosis virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1C8N OCA].

	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~10864506~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:010864506</ref><references group="xtra"/>
	[[Category: Unidentified tobacco necrosis virus]]		[[Category: Unidentified tobacco necrosis virus]]
	[[Category: Fukuyama, K.]]		[[Category: Fukuyama, K.]]
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	[[Category: Icosahedral virus]]		[[Category: Icosahedral virus]]
	[[Category: Virus]]		[[Category: Virus]]
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-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 16:59:29 2009''

OCA at 14:59, 17 February 2009

OCA — Tue, 17 Feb 2009 14:59:30 GMT

←Older revision		Revision as of 14:59, 17 February 2009
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	==About this Structure==		==About this Structure==
-	1C8N is a ~~[[Single protein]]~~ structure of ~~sequence~~ from [http://en.wikipedia.org/wiki/Unidentified_tobacco_necrosis_virus Unidentified tobacco necrosis virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1C8N OCA].	+	1C8N is a 3 chains structure of sequences from [http://en.wikipedia.org/wiki/Unidentified_tobacco_necrosis_virus Unidentified tobacco necrosis virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1C8N OCA].

	==Reference==		==Reference==
-	~~Crystal structure of tobacco necrosis virus at 2.25 A resolution., Oda Y, Saeki K, Takahashi Y, Maeda T, Naitow H, Tsukihara T, Fukuyama K, J Mol Biol. 2000 Jun 30;300(1):153-69.~~ PMID:~~[http:~~//~~www.ncbi.nlm.nih.gov/pubmed/10864506 10864506]~~	+	<ref group="xtra">PMID:10864506</ref><references group="xtra"/>
-	~~[[Category: Single protein]]~~	+
	[[Category: Unidentified tobacco necrosis virus]]		[[Category: Unidentified tobacco necrosis virus]]
	[[Category: Fukuyama, K.]]		[[Category: Fukuyama, K.]]
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	[[Category: Virus]]		[[Category: Virus]]

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on ~~Mon Jun 30 20~~:22:~~16 2008~~''	+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 16:59:29 2009''