1cgm - Revision history

OCA at 15:40, 13 March 2024

OCA — Wed, 13 Mar 2024 15:40:06 GMT

←Older revision		Revision as of 15:40, 13 March 2024
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	<StructureSection load='1cgm' size='340' side='right'caption='[[1cgm]], [[Resolution\|resolution]] 3.40Å' scene=''>		<StructureSection load='1cgm' size='340' side='right'caption='[[1cgm]], [[Resolution\|resolution]] 3.40Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1cgm]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Ccgmv Ccgmv~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1CGM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1CGM FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1cgm]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Cucumber_green_mottle_mosaic_virus Cucumber green mottle mosaic virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1CGM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1CGM FirstGlance]. <br>
-	</td></tr><tr id='~~NonStdRes~~'><td class="sblockLbl"><b>[[~~Non-Standard_Residue~~\|~~NonStd Res~~:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACE:ACETYL+GROUP'>ACE</scene></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">Fiber diffraction, [[Resolution\|Resolution]] 3.4Å</td></tr>
		+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACE:ACETYL+GROUP'>ACE</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1cgm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1cgm OCA], [https://pdbe.org/1cgm PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1cgm RCSB], [https://www.ebi.ac.uk/pdbsum/1cgm PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1cgm ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1cgm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1cgm OCA], [https://pdbe.org/1cgm PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1cgm RCSB], [https://www.ebi.ac.uk/pdbsum/1cgm PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1cgm ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[https://www.uniprot.org/uniprot/~~CAPSD_CGMVS CAPSD_CGMVS]~~] Capsid protein self-assembles to form rod-shaped virions about 18 nm in diameter with a central canal enclosing the viral genomic RNA.	+	[https://www.uniprot.org/uniprot/CAPSD_CGMVW CAPSD_CGMVW] Capsid protein self-assembles to form rod-shaped virions about 18 nm in diameter with a central canal enclosing the viral genomic RNA.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
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	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1cgm ConSurf].		</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1cgm ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
-	<div style="background-color:#fffaf0;">
-	== Publication Abstract from PubMed ==
-	Cucumber green mottle mosaic virus (CGMMV) is a rod-shaped virus of the tobacco mosaic virus (TMV) group. The structure of cucumber green mottle mosaic virus has been determined by fiber diffraction methods at 3.4 A resolution, and refined by molecular dynamics methods to an R factor of 0.093. Disassembly of TMV is driven by the mutual repulsion of intersubunit carboxyl-carboxylate pairs, but one of these pairs is not conserved in CGMMV. An alternative pair, located about 5 A from the site of the TMV pair, has been found in CGMMV. Comparison of the two structures suggests that the carboxylate groups are free to migrate in the subunit interfaces during evolution.
-
-	Structure determination of cucumber green mottle mosaic virus by X-ray fiber diffraction. Significance for the evolution of tobamoviruses.,Wang H, Stubbs G J Mol Biol. 1994 Jun 10;239(3):371-84. PMID:8201619<ref>PMID:8201619</ref>
-
-	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	</div>
-	<div class="pdbe-citations 1cgm" style="background-color:#fffaf0;"></div>

	==See Also==		==See Also==
	*[[Virus coat proteins 3D structures\|Virus coat proteins 3D structures]]		*[[Virus coat proteins 3D structures\|Virus coat proteins 3D structures]]
-	== References ==
-	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Ccgmv~~]]	+	[[Category: Cucumber green mottle mosaic virus]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Stubbs, G]]	+	[[Category: Stubbs G]]
-	[[Category: Wang, H]]	+	[[Category: Wang H]]
-	~~[[Category: Helical virus]]~~	+
-	~~[[Category: Virus~~]]	+

OCA at 10:36, 14 July 2021

OCA — Wed, 14 Jul 2021 10:36:47 GMT

←Older revision		Revision as of 10:36, 14 July 2021
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	<StructureSection load='1cgm' size='340' side='right'caption='[[1cgm]], [[Resolution\|resolution]] 3.40Å' scene=''>		<StructureSection load='1cgm' size='340' side='right'caption='[[1cgm]], [[Resolution\|resolution]] 3.40Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1cgm]] is a 2 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Ccgmv Ccgmv]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1CGM OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1CGM FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1cgm]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Ccgmv Ccgmv]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1CGM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1CGM FirstGlance]. <br>
	</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACE:ACETYL+GROUP'>ACE</scene></td></tr>		</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACE:ACETYL+GROUP'>ACE</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1cgm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1cgm OCA], [~~http~~://pdbe.org/1cgm PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=1cgm RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/1cgm PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=1cgm ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1cgm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1cgm OCA], [https://pdbe.org/1cgm PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1cgm RCSB], [https://www.ebi.ac.uk/pdbsum/1cgm PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1cgm ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[~~http~~://www.uniprot.org/uniprot/CAPSD_CGMVS CAPSD_CGMVS]] Capsid protein self-assembles to form rod-shaped virions about 18 nm in diameter with a central canal enclosing the viral genomic RNA.	+	[[https://www.uniprot.org/uniprot/CAPSD_CGMVS CAPSD_CGMVS]] Capsid protein self-assembles to form rod-shaped virions about 18 nm in diameter with a central canal enclosing the viral genomic RNA.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 30:		Line 30:

	==See Also==		==See Also==
-	*[[Virus coat ~~protein~~\|Virus coat ~~protein~~]]	+	*[[Virus coat proteins 3D structures\|Virus coat proteins 3D structures]]
	== References ==		== References ==
	<references/>		<references/>

OCA at 06:43, 10 October 2019

OCA — Thu, 10 Oct 2019 06:43:55 GMT

←Older revision		Revision as of 06:43, 10 October 2019
Line 1:		Line 1:

	==STRUCTURE DETERMINATION OF CUCUMBER GREEN MOTTLE MOSAIC VIRUS BY X-RAY FIBER DIFFRACTION. SIGNIFICANCE FOR THE EVOLUTION OF TOBAMOVIRUSES==		==STRUCTURE DETERMINATION OF CUCUMBER GREEN MOTTLE MOSAIC VIRUS BY X-RAY FIBER DIFFRACTION. SIGNIFICANCE FOR THE EVOLUTION OF TOBAMOVIRUSES==
-	<StructureSection load='1cgm' size='340' side='right' caption='[[1cgm]], [[Resolution\|resolution]] 3.40Å' scene=''>	+	<StructureSection load='1cgm' size='340' side='right'caption='[[1cgm]], [[Resolution\|resolution]] 3.40Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1cgm]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Ccgmv Ccgmv]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1CGM OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1CGM FirstGlance]. <br>		<table><tr><td colspan='2'>[[1cgm]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Ccgmv Ccgmv]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1CGM OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1CGM FirstGlance]. <br>
Line 13:		Line 13:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/cg/1cgm_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/cg/1cgm_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
Line 28:		Line 28:
	</div>		</div>
	<div class="pdbe-citations 1cgm" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 1cgm" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[Virus coat protein\|Virus coat protein]]
	== References ==		== References ==
	<references/>		<references/>
Line 33:		Line 36:
	</StructureSection>		</StructureSection>
	[[Category: Ccgmv]]		[[Category: Ccgmv]]
		+	[[Category: Large Structures]]
	[[Category: Stubbs, G]]		[[Category: Stubbs, G]]
	[[Category: Wang, H]]		[[Category: Wang, H]]
	[[Category: Helical virus]]		[[Category: Helical virus]]
	[[Category: Virus]]		[[Category: Virus]]

OCA at 06:28, 29 November 2017

OCA — Wed, 29 Nov 2017 06:28:26 GMT

←Older revision		Revision as of 06:28, 29 November 2017
Line 3:		Line 3:
	<StructureSection load='1cgm' size='340' side='right' caption='[[1cgm]], [[Resolution\|resolution]] 3.40Å' scene=''>		<StructureSection load='1cgm' size='340' side='right' caption='[[1cgm]], [[Resolution\|resolution]] 3.40Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1cgm]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1CGM OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1CGM FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1cgm]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Ccgmv Ccgmv]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1CGM OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1CGM FirstGlance]. <br>
	</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACE:ACETYL+GROUP'>ACE</scene></td></tr>		</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACE:ACETYL+GROUP'>ACE</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1cgm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1cgm OCA], [http://pdbe.org/1cgm PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1cgm RCSB], [http://www.ebi.ac.uk/pdbsum/1cgm PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1cgm ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1cgm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1cgm OCA], [http://pdbe.org/1cgm PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1cgm RCSB], [http://www.ebi.ac.uk/pdbsum/1cgm PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1cgm ProSAT]</span></td></tr>
Line 28:		Line 28:
	</div>		</div>
	<div class="pdbe-citations 1cgm" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 1cgm" style="background-color:#fffaf0;"></div>
-
-	==See Also==
-	*[[Virus coat protein\|Virus coat protein]]
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Ccgmv]]
	[[Category: Stubbs, G]]		[[Category: Stubbs, G]]
	[[Category: Wang, H]]		[[Category: Wang, H]]
	[[Category: Helical virus]]		[[Category: Helical virus]]
	[[Category: Virus]]		[[Category: Virus]]

OCA at 11:11, 24 August 2017

OCA — Thu, 24 Aug 2017 11:11:35 GMT

←Older revision		Revision as of 11:11, 24 August 2017
Line 1:		Line 1:
		+
	==STRUCTURE DETERMINATION OF CUCUMBER GREEN MOTTLE MOSAIC VIRUS BY X-RAY FIBER DIFFRACTION. SIGNIFICANCE FOR THE EVOLUTION OF TOBAMOVIRUSES==		==STRUCTURE DETERMINATION OF CUCUMBER GREEN MOTTLE MOSAIC VIRUS BY X-RAY FIBER DIFFRACTION. SIGNIFICANCE FOR THE EVOLUTION OF TOBAMOVIRUSES==
	<StructureSection load='1cgm' size='340' side='right' caption='[[1cgm]], [[Resolution\|resolution]] 3.40Å' scene=''>		<StructureSection load='1cgm' size='340' side='right' caption='[[1cgm]], [[Resolution\|resolution]] 3.40Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1cgm]] is a 2 chain structure ~~with sequence from [http://en.wikipedia.org/wiki/Ccgmv Ccgmv]~~. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1CGM OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1CGM FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1cgm]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1CGM OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1CGM FirstGlance]. <br>
	</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACE:ACETYL+GROUP'>ACE</scene></td></tr>		</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACE:ACETYL+GROUP'>ACE</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1cgm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1cgm OCA], [http://pdbe.org/1cgm PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1cgm RCSB], [http://www.ebi.ac.uk/pdbsum/1cgm PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1cgm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1cgm OCA], [http://pdbe.org/1cgm PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1cgm RCSB], [http://www.ebi.ac.uk/pdbsum/1cgm PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1cgm ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 16:		Line 17:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1cgm ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
Line 34:		Line 35:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Ccgmv]]
	[[Category: Stubbs, G]]		[[Category: Stubbs, G]]
	[[Category: Wang, H]]		[[Category: Wang, H]]
	[[Category: Helical virus]]		[[Category: Helical virus]]
	[[Category: Virus]]		[[Category: Virus]]

OCA at 11:14, 11 September 2015

OCA — Fri, 11 Sep 2015 11:14:15 GMT

←Older revision		Revision as of 11:14, 11 September 2015
Line 2:		Line 2:
	<StructureSection load='1cgm' size='340' side='right' caption='[[1cgm]], [[Resolution\|resolution]] 3.40Å' scene=''>		<StructureSection load='1cgm' size='340' side='right' caption='[[1cgm]], [[Resolution\|resolution]] 3.40Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1cgm]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Cucumber_green_mottle_mosaic_virus Cucumber green mottle mosaic virus~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1CGM OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1CGM FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1cgm]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Ccgmv Ccgmv]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1CGM OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1CGM FirstGlance]. <br>
	</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACE:ACETYL+GROUP'>ACE</scene></td></tr>		</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACE:ACETYL+GROUP'>ACE</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1cgm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1cgm OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1cgm RCSB], [http://www.ebi.ac.uk/pdbsum/1cgm PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1cgm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1cgm OCA], [http://pdbe.org/1cgm PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1cgm RCSB], [http://www.ebi.ac.uk/pdbsum/1cgm PDBsum]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 26:		Line 26:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 1cgm" style="background-color:#fffaf0;"></div>

	==See Also==		==See Also==
Line 33:		Line 34:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Cucumber green mottle mosaic virus~~]]	+	[[Category: Ccgmv]]
	[[Category: Stubbs, G]]		[[Category: Stubbs, G]]
	[[Category: Wang, H]]		[[Category: Wang, H]]
	[[Category: Helical virus]]		[[Category: Helical virus]]
	[[Category: Virus]]		[[Category: Virus]]

OCA at 15:41, 25 December 2014

OCA — Thu, 25 Dec 2014 15:41:36 GMT

←Older revision		Revision as of 15:41, 25 December 2014
Line 6:		Line 6:
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1cgm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1cgm OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1cgm RCSB], [http://www.ebi.ac.uk/pdbsum/1cgm PDBsum]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1cgm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1cgm OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1cgm RCSB], [http://www.ebi.ac.uk/pdbsum/1cgm PDBsum]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/CAPSD_CGMVS CAPSD_CGMVS]] Capsid protein self-assembles to form rod-shaped virions about 18 nm in diameter with a central canal enclosing the viral genomic RNA.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]

OCA at 09:38, 22 December 2014

OCA — Mon, 22 Dec 2014 09:38:01 GMT

←Older revision		Revision as of 09:38, 22 December 2014
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1cgm]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Cucumber_green_mottle_mosaic_virus Cucumber green mottle mosaic virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1CGM OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1CGM FirstGlance]. <br>		<table><tr><td colspan='2'>[[1cgm]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Cucumber_green_mottle_mosaic_virus Cucumber green mottle mosaic virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1CGM OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1CGM FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACE:ACETYL+GROUP'>ACE</scene></td></tr>	+	</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACE:ACETYL+GROUP'>ACE</scene></td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1cgm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1cgm OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1cgm RCSB], [http://www.ebi.ac.uk/pdbsum/1cgm PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1cgm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1cgm OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1cgm RCSB], [http://www.ebi.ac.uk/pdbsum/1cgm PDBsum]</span></td></tr>
-	<table>	+	</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 32:		Line 32:
	</StructureSection>		</StructureSection>
	[[Category: Cucumber green mottle mosaic virus]]		[[Category: Cucumber green mottle mosaic virus]]
-	[[Category: Stubbs, G.]]	+	[[Category: Stubbs, G]]
-	[[Category: Wang, H.]]	+	[[Category: Wang, H]]
	[[Category: Helical virus]]		[[Category: Helical virus]]
	[[Category: Virus]]		[[Category: Virus]]

OCA at 17:00, 20 August 2014

OCA — Wed, 20 Aug 2014 17:00:43 GMT

←Older revision		Revision as of 17:00, 20 August 2014
Line 1:		Line 1:
-	[[~~Image~~:1cgm.~~png\|left~~\|200px]]	+	==STRUCTURE DETERMINATION OF CUCUMBER GREEN MOTTLE MOSAIC VIRUS BY X-RAY FIBER DIFFRACTION. SIGNIFICANCE FOR THE EVOLUTION OF TOBAMOVIRUSES==
		+	<StructureSection load='1cgm' size='340' side='right' caption='[[1cgm]], [[Resolution\|resolution]] 3.40Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[1cgm]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Cucumber_green_mottle_mosaic_virus Cucumber green mottle mosaic virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1CGM OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1CGM FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACE:ACETYL+GROUP'>ACE</scene></td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1cgm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1cgm OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1cgm RCSB], [http://www.ebi.ac.uk/pdbsum/1cgm PDBsum]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/cg/1cgm_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Cucumber green mottle mosaic virus (CGMMV) is a rod-shaped virus of the tobacco mosaic virus (TMV) group. The structure of cucumber green mottle mosaic virus has been determined by fiber diffraction methods at 3.4 A resolution, and refined by molecular dynamics methods to an R factor of 0.093. Disassembly of TMV is driven by the mutual repulsion of intersubunit carboxyl-carboxylate pairs, but one of these pairs is not conserved in CGMMV. An alternative pair, located about 5 A from the site of the TMV pair, has been found in CGMMV. Comparison of the two structures suggests that the carboxylate groups are free to migrate in the subunit interfaces during evolution.

-	~~{{STRUCTURE_1cgm\| PDB=1cgm \| SCENE= }}~~	+	Structure determination of cucumber green mottle mosaic virus by X-ray fiber diffraction. Significance for the evolution of tobamoviruses.,Wang H, Stubbs G J Mol Biol. 1994 Jun 10;239(3):371-84. PMID:8201619<ref>PMID:8201619</ref>

-	~~===STRUCTURE DETERMINATION OF CUCUMBER GREEN MOTTLE MOSAIC VIRUS BY X-RAY FIBER DIFFRACTION. SIGNIFICANCE FOR THE EVOLUTION OF TOBAMOVIRUSES===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_8201619}}~~	+
-		+
-	~~==About this Structure==~~	+
-	~~[[1cgm]] is~~ a ~~2 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org/wiki/Cucumber_green_mottle_mosaic_virus Cucumber green mottle mosaic virus]~~. ~~Full crystallographic information is available from [http:~~/~~/oca.weizmann.ac.il/oca-bin/ocashort?id=1CGM OCA].~~	+

	==See Also==		==See Also==
	*[[Virus coat protein\|Virus coat protein]]		*[[Virus coat protein\|Virus coat protein]]
-		+	== References ==
-	==~~Reference~~==	+	<references/>
-	<~~ref group="xtra">PMID:008201619<~~/~~ref~~><~~references group="xtra"~~/>	+	__TOC__
		+	</StructureSection>
	[[Category: Cucumber green mottle mosaic virus]]		[[Category: Cucumber green mottle mosaic virus]]
	[[Category: Stubbs, G.]]		[[Category: Stubbs, G.]]

OCA: Protected "1cgm" [edit=sysop:move=sysop]

OCA — Sat, 20 Oct 2012 18:28:20 GMT

Protected "1cgm" [edit=sysop:move=sysop]

←Older revision

Revision as of 18:28, 20 October 2012