1cku - Revision history

OCA at 23:27, 27 December 2023

OCA — Wed, 27 Dec 2023 23:27:23 GMT

←Older revision		Revision as of 23:27, 27 December 2023
Line 3:		Line 3:
	<StructureSection load='1cku' size='340' side='right'caption='[[1cku]], [[Resolution\|resolution]] 1.20Å' scene=''>		<StructureSection load='1cku' size='340' side='right'caption='[[1cku]], [[Resolution\|resolution]] 1.20Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1cku]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1CKU OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1CKU FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1cku]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Allochromatium_vinosum Allochromatium vinosum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1CKU OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1CKU FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SF4:IRON/SULFUR+CLUSTER'>SF4</scene></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.2Å</td></tr>
		+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SF4:IRON/SULFUR+CLUSTER'>SF4</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1cku FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1cku OCA], [https://pdbe.org/1cku PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1cku RCSB], [https://www.ebi.ac.uk/pdbsum/1cku PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1cku ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1cku FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1cku OCA], [https://pdbe.org/1cku PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1cku RCSB], [https://www.ebi.ac.uk/pdbsum/1cku PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1cku ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[https://www.uniprot.org/uniprot/HIP_ALLVD HIP_ALLVD]] Specific class of high-redox-potential 4Fe-4S ferredoxins. Functions in anaerobic electron transport in most purple and in some other photosynthetic bacteria and in at least one genus (Paracoccus) of halophilic, denitrifying bacteria.	+	[https://www.uniprot.org/uniprot/HIP_ALLVD HIP_ALLVD] Specific class of high-redox-potential 4Fe-4S ferredoxins. Functions in anaerobic electron transport in most purple and in some other photosynthetic bacteria and in at least one genus (Paracoccus) of halophilic, denitrifying bacteria.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 32:		Line 33:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Allochromatium vinosum]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Capozzi, F]]	+	[[Category: Capozzi F]]
-	[[Category: Lamzin, V]]	+	[[Category: Lamzin V]]
-	[[Category: Lubini, P]]	+	[[Category: Lubini P]]
-	[[Category: Luchinat, C]]	+	[[Category: Luchinat C]]
-	[[Category: Parisini, E]]	+	[[Category: Parisini E]]
-	[[Category: Sheldrick~~, G M]]~~	+	[[Category: Sheldrick GM]]
-	~~[[Category: Atomic resolution]]~~	+
-	~~[[Category: Direct method]]~~	+
-	~~[[Category: Electron transfer protein]]~~	+
-	~~[[Category: Iron-sulphur cluster]]~~	+
-	~~[[Category: Metalloprotein~~]]	+

OCA at 15:17, 3 March 2021

OCA — Wed, 03 Mar 2021 15:17:08 GMT

←Older revision		Revision as of 15:17, 3 March 2021
Line 3:		Line 3:
	<StructureSection load='1cku' size='340' side='right'caption='[[1cku]], [[Resolution\|resolution]] 1.20Å' scene=''>		<StructureSection load='1cku' size='340' side='right'caption='[[1cku]], [[Resolution\|resolution]] 1.20Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1cku]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1CKU OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1CKU FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1cku]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1CKU OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1CKU FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SF4:IRON/SULFUR+CLUSTER'>SF4</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SF4:IRON/SULFUR+CLUSTER'>SF4</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1cku FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1cku OCA], [~~http~~://pdbe.org/1cku PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=1cku RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/1cku PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=1cku ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1cku FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1cku OCA], [https://pdbe.org/1cku PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1cku RCSB], [https://www.ebi.ac.uk/pdbsum/1cku PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1cku ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[~~http~~://www.uniprot.org/uniprot/HIP_ALLVD HIP_ALLVD]] Specific class of high-redox-potential 4Fe-4S ferredoxins. Functions in anaerobic electron transport in most purple and in some other photosynthetic bacteria and in at least one genus (Paracoccus) of halophilic, denitrifying bacteria.	+	[[https://www.uniprot.org/uniprot/HIP_ALLVD HIP_ALLVD]] Specific class of high-redox-potential 4Fe-4S ferredoxins. Functions in anaerobic electron transport in most purple and in some other photosynthetic bacteria and in at least one genus (Paracoccus) of halophilic, denitrifying bacteria.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]

OCA at 07:32, 29 May 2019

OCA — Wed, 29 May 2019 07:32:12 GMT

←Older revision		Revision as of 07:32, 29 May 2019
Line 1:		Line 1:

	==AB INITIO SOLUTION AND REFINEMENT OF TWO HIGH POTENTIAL IRON PROTEIN STRUCTURES AT ATOMIC RESOLUTION==		==AB INITIO SOLUTION AND REFINEMENT OF TWO HIGH POTENTIAL IRON PROTEIN STRUCTURES AT ATOMIC RESOLUTION==
-	<StructureSection load='1cku' size='340' side='right' caption='[[1cku]], [[Resolution\|resolution]] 1.20Å' scene=''>	+	<StructureSection load='1cku' size='340' side='right'caption='[[1cku]], [[Resolution\|resolution]] 1.20Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1cku]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1CKU OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1CKU FirstGlance]. <br>		<table><tr><td colspan='2'>[[1cku]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1CKU OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1CKU FirstGlance]. <br>
Line 13:		Line 13:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ck/1cku_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ck/1cku_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
Line 32:		Line 32:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
	[[Category: Capozzi, F]]		[[Category: Capozzi, F]]
	[[Category: Lamzin, V]]		[[Category: Lamzin, V]]

OCA at 11:16, 24 August 2017

OCA — Thu, 24 Aug 2017 11:16:03 GMT

←Older revision		Revision as of 11:16, 24 August 2017
Line 1:		Line 1:
		+
	==AB INITIO SOLUTION AND REFINEMENT OF TWO HIGH POTENTIAL IRON PROTEIN STRUCTURES AT ATOMIC RESOLUTION==		==AB INITIO SOLUTION AND REFINEMENT OF TWO HIGH POTENTIAL IRON PROTEIN STRUCTURES AT ATOMIC RESOLUTION==
	<StructureSection load='1cku' size='340' side='right' caption='[[1cku]], [[Resolution\|resolution]] 1.20Å' scene=''>		<StructureSection load='1cku' size='340' side='right' caption='[[1cku]], [[Resolution\|resolution]] 1.20Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1cku]] is a 2 chain structure ~~with sequence from [http://en.wikipedia.org/wiki/"bacillus_vinosus"_(ehrenberg_1838)_trevisan_1889 "bacillus vinosus" (ehrenberg 1838) trevisan 1889]~~. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1CKU OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1CKU FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1cku]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1CKU OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1CKU FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SF4:IRON/SULFUR+CLUSTER'>SF4</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SF4:IRON/SULFUR+CLUSTER'>SF4</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1cku FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1cku OCA], [http://pdbe.org/1cku PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1cku RCSB], [http://www.ebi.ac.uk/pdbsum/1cku PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1cku FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1cku OCA], [http://pdbe.org/1cku PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1cku RCSB], [http://www.ebi.ac.uk/pdbsum/1cku PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1cku ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 16:		Line 17:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1cku ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 07:11, 11 September 2015

OCA — Fri, 11 Sep 2015 07:11:43 GMT

←Older revision		Revision as of 07:11, 11 September 2015
Line 2:		Line 2:
	<StructureSection load='1cku' size='340' side='right' caption='[[1cku]], [[Resolution\|resolution]] 1.20Å' scene=''>		<StructureSection load='1cku' size='340' side='right' caption='[[1cku]], [[Resolution\|resolution]] 1.20Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1cku]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Allochromatium_vinosum Allochromatium vinosum~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1CKU OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1CKU FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1cku]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_vinosus"_(ehrenberg_1838)_trevisan_1889 "bacillus vinosus" (ehrenberg 1838) trevisan 1889]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1CKU OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1CKU FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SF4:IRON/SULFUR+CLUSTER'>SF4</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SF4:IRON/SULFUR+CLUSTER'>SF4</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1cku FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1cku OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1cku RCSB], [http://www.ebi.ac.uk/pdbsum/1cku PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1cku FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1cku OCA], [http://pdbe.org/1cku PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1cku RCSB], [http://www.ebi.ac.uk/pdbsum/1cku PDBsum]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 26:		Line 26:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 1cku" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Allochromatium vinosum]]
	[[Category: Capozzi, F]]		[[Category: Capozzi, F]]
	[[Category: Lamzin, V]]		[[Category: Lamzin, V]]

OCA at 13:04, 25 December 2014

OCA — Thu, 25 Dec 2014 13:04:12 GMT

←Older revision		Revision as of 13:04, 25 December 2014
Line 6:		Line 6:
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1cku FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1cku OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1cku RCSB], [http://www.ebi.ac.uk/pdbsum/1cku PDBsum]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1cku FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1cku OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1cku RCSB], [http://www.ebi.ac.uk/pdbsum/1cku PDBsum]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/HIP_ALLVD HIP_ALLVD]] Specific class of high-redox-potential 4Fe-4S ferredoxins. Functions in anaerobic electron transport in most purple and in some other photosynthetic bacteria and in at least one genus (Paracoccus) of halophilic, denitrifying bacteria.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]

OCA at 21:33, 22 December 2014

OCA — Mon, 22 Dec 2014 21:33:18 GMT

←Older revision		Revision as of 21:33, 22 December 2014
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1cku]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Allochromatium_vinosum Allochromatium vinosum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1CKU OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1CKU FirstGlance]. <br>		<table><tr><td colspan='2'>[[1cku]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Allochromatium_vinosum Allochromatium vinosum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1CKU OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1CKU FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SF4:IRON/SULFUR+CLUSTER'>SF4</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SF4:IRON/SULFUR+CLUSTER'>SF4</scene></td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1cku FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1cku OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1cku RCSB], [http://www.ebi.ac.uk/pdbsum/1cku PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1cku FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1cku OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1cku RCSB], [http://www.ebi.ac.uk/pdbsum/1cku PDBsum]</span></td></tr>
-	<table>	+	</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 29:		Line 29:
	</StructureSection>		</StructureSection>
	[[Category: Allochromatium vinosum]]		[[Category: Allochromatium vinosum]]
-	[[Category: Capozzi, F.]]	+	[[Category: Capozzi, F]]
-	[[Category: Lamzin, V.]]	+	[[Category: Lamzin, V]]
-	[[Category: Lubini, P.]]	+	[[Category: Lubini, P]]
-	[[Category: Luchinat, C.]]	+	[[Category: Luchinat, C]]
-	[[Category: Parisini, E.]]	+	[[Category: Parisini, E]]
-	[[Category: Sheldrick, G M.]]	+	[[Category: Sheldrick, G M]]
	[[Category: Atomic resolution]]		[[Category: Atomic resolution]]
	[[Category: Direct method]]		[[Category: Direct method]]

OCA at 17:06, 20 August 2014

OCA — Wed, 20 Aug 2014 17:06:24 GMT

←Older revision		Revision as of 17:06, 20 August 2014
Line 1:		Line 1:
-	[[~~Image~~:1cku.~~png\|left~~\|200px]]	+	==AB INITIO SOLUTION AND REFINEMENT OF TWO HIGH POTENTIAL IRON PROTEIN STRUCTURES AT ATOMIC RESOLUTION==
		+	<StructureSection load='1cku' size='340' side='right' caption='[[1cku]], [[Resolution\|resolution]] 1.20Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[1cku]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Allochromatium_vinosum Allochromatium vinosum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1CKU OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1CKU FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SF4:IRON/SULFUR+CLUSTER'>SF4</scene><br>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1cku FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1cku OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1cku RCSB], [http://www.ebi.ac.uk/pdbsum/1cku PDBsum]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ck/1cku_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	The crystal structure of the reduced high-potential iron protein (HiPIP) from Chromatium vinosum has been redetermined in a new orthorhombic crystal modification, and the structure of its H42Q mutant has been determined in orthorhombic (H42Q-1) and cubic (H42Q-2) modifications. The first two were solved by ab initio direct methods using data collected to atomic resolution (1.20 and 0. 93 A, respectively). The recombinant wild type (rc-WT) with two HiPIP molecules in the asymmetric unit has 1264 protein atoms and 335 solvent sites, and is the second largest structure reported so far that has been solved by pure direct methods. The solutions were obtained in a fully automated way and included more than 80% of the protein atoms. Restrained anisotropic refinement for rc-WT and H42Q-1 converged to R(1) = summation operator\|\|F(o)\| - \|F(c)\|\| / summation operator\|F(o)\| of 12.0 and 13.6%, respectively [data with I > 2sigma(I)], and 12.8 and 15.5% (all data). H42Q-2 contains two molecules in the asymmetric unit and diffracted only to 2.6 A. In both molecules of rc-WT and in the single unique molecule of H42Q-1 the [Fe(4)S(4)](2+) cluster dimensions are very similar and show a characteristic tetragonal distortion with four short Fe-S bonds along four approximately parallel cube edges, and eight long Fe-S bonds. The unique protein molecules in H42Q-2 and rc-WT are also very similar in other respects, except for the hydrogen bonding around the mutated residue that is at the surface of the protein, supporting the hypothesis that the difference in redox potentials at lower pH values is caused primarily by differences in the charge distribution near the surface of the protein rather than by structural differences in the cluster region.

-	~~{{STRUCTURE_1cku\| PDB=1cku \| SCENE= }}~~	+	Ab initio solution and refinement of two high-potential iron protein structures at atomic resolution.,Parisini E, Capozzi F, Lubini P, Lamzin V, Luchinat C, Sheldrick GM Acta Crystallogr D Biol Crystallogr. 1999 Nov;55(Pt 11):1773-84. PMID:10531472<ref>PMID:10531472</ref>

-	~~===AB INITIO SOLUTION AND REFINEMENT OF TWO HIGH POTENTIAL IRON PROTEIN STRUCTURES AT ATOMIC RESOLUTION===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_10531472}}~~	+	== References ==
-		+	<references/>
-	~~==About this Structure==~~	+	__TOC__
-	~~[[1cku]] is~~ a ~~2 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org/wiki/Allochromatium_vinosum Allochromatium vinosum]~~. ~~Full crystallographic information is available from [http:~~/~~/oca.weizmann.ac.il/oca-bin/ocashort?id=1CKU OCA].~~	+	</StructureSection>
-		+
-	==~~Reference~~==	+
-	<~~ref group="xtra">PMID:010531472<~~/~~ref~~><~~references group="xtra"~~/>	+
	[[Category: Allochromatium vinosum]]		[[Category: Allochromatium vinosum]]
	[[Category: Capozzi, F.]]		[[Category: Capozzi, F.]]

OCA: Protected "1cku" [edit=sysop:move=sysop]

OCA — Sun, 21 Oct 2012 20:43:02 GMT

Protected "1cku" [edit=sysop:move=sysop]

←Older revision

Revision as of 20:43, 21 October 2012

OCA at 20:42, 21 October 2012

OCA — Sun, 21 Oct 2012 20:42:59 GMT

←Older revision		Revision as of 20:42, 21 October 2012
Line 1:		Line 1:
-	{{Seed}}
	[[Image:1cku.png\|left\|200px]]		[[Image:1cku.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_1cku", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_1cku\| PDB=1cku \| SCENE= }}		{{STRUCTURE_1cku\| PDB=1cku \| SCENE= }}

	===AB INITIO SOLUTION AND REFINEMENT OF TWO HIGH POTENTIAL IRON PROTEIN STRUCTURES AT ATOMIC RESOLUTION===		===AB INITIO SOLUTION AND REFINEMENT OF TWO HIGH POTENTIAL IRON PROTEIN STRUCTURES AT ATOMIC RESOLUTION===

-
-	<!--
-	The line below this paragraph, {{ABSTRACT_PUBMED_10531472}}, adds the Publication Abstract to the page
-	(as it appears on PubMed at http://www.pubmed.gov), where 10531472 is the PubMed ID number.
-	-->
	{{ABSTRACT_PUBMED_10531472}}		{{ABSTRACT_PUBMED_10531472}}

	==About this Structure==		==About this Structure==
-	~~1CKU~~ is a 2 ~~chains~~ structure ~~of sequences~~ from [http://en.wikipedia.org/wiki/Allochromatium_vinosum Allochromatium vinosum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1CKU OCA].	+	[[1cku]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Allochromatium_vinosum Allochromatium vinosum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1CKU OCA].

	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~10531472~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:010531472</ref><references group="xtra"/>
	[[Category: Allochromatium vinosum]]		[[Category: Allochromatium vinosum]]
	[[Category: Capozzi, F.]]		[[Category: Capozzi, F.]]
Line 36:		Line 24:
	[[Category: Iron-sulphur cluster]]		[[Category: Iron-sulphur cluster]]
	[[Category: Metalloprotein]]		[[Category: Metalloprotein]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 16:54:44 2009''