1dsr - Revision history

OCA at 07:48, 15 November 2023

OCA — Wed, 15 Nov 2023 07:48:33 GMT

←Older revision		Revision as of 07:48, 15 November 2023
Line 4:		Line 4:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1dsr]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Actinoplanes_sp. Actinoplanes sp.]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1DSR OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1DSR FirstGlance]. <br>		<table><tr><td colspan='2'>[[1dsr]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Actinoplanes_sp. Actinoplanes sp.]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1DSR OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1DSR FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=2TL:D-ALLOTHREONINE'>2TL</scene>, <scene name='pdbligand=AHB:BETA-HYDROXYASPARAGINE'>AHB</scene>, <scene name='pdbligand=ALO:ALLO-THREONINE'>ALO</scene>, <scene name='pdbligand=CHP:3-CHLORO-4-HYDROXYPHENYLGLYCINE'>CHP</scene>, <scene name='pdbligand=D4P:(2S)-AMINO(4-HYDROXYPHENYL)ACETIC+ACID'>D4P</scene>, <scene name='pdbligand=DAL:D-ALANINE'>DAL</scene>, <scene name='pdbligand=FA7:(2Z,4E)-7-METHYLOCTA-2,4-DIENOIC+ACID'>FA7</scene>, <scene name='pdbligand=GHP:(2R)-AMINO(4-HYDROXYPHENYL)ETHANOIC+ACID'>GHP</scene>, <scene name='pdbligand=MAN:ALPHA-D-MANNOSE'>MAN</scene>, <scene name='pdbligand=ORD:D-ORNITHINE'>ORD</scene>, <scene name='pdbligand=PRD_000222:RAMOPLANIN+A2'>PRD_000222</scene></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
		+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=2TL:D-ALLOTHREONINE'>2TL</scene>, <scene name='pdbligand=AHB:BETA-HYDROXYASPARAGINE'>AHB</scene>, <scene name='pdbligand=ALO:ALLO-THREONINE'>ALO</scene>, <scene name='pdbligand=CHP:3-CHLORO-4-HYDROXYPHENYLGLYCINE'>CHP</scene>, <scene name='pdbligand=D4P:(2S)-AMINO(4-HYDROXYPHENYL)ACETIC+ACID'>D4P</scene>, <scene name='pdbligand=DAL:D-ALANINE'>DAL</scene>, <scene name='pdbligand=FA7:(2Z,4E)-7-METHYLOCTA-2,4-DIENOIC+ACID'>FA7</scene>, <scene name='pdbligand=GHP:(2R)-AMINO(4-HYDROXYPHENYL)ETHANOIC+ACID'>GHP</scene>, <scene name='pdbligand=MAN:ALPHA-D-MANNOSE'>MAN</scene>, <scene name='pdbligand=ORD:D-ORNITHINE'>ORD</scene>, <scene name='pdbligand=PRD_000222:RAMOPLANIN+A2'>PRD_000222</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1dsr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1dsr OCA], [https://pdbe.org/1dsr PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1dsr RCSB], [https://www.ebi.ac.uk/pdbsum/1dsr PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1dsr ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1dsr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1dsr OCA], [https://pdbe.org/1dsr PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1dsr RCSB], [https://www.ebi.ac.uk/pdbsum/1dsr PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1dsr ProSAT]</span></td></tr>
	</table>		</table>

OCA at 10:37, 14 December 2022

OCA — Wed, 14 Dec 2022 10:37:22 GMT

←Older revision		Revision as of 10:37, 14 December 2022
Line 1:		Line 1:

	==Peptide antibiotic, NMR, 6 structures==		==Peptide antibiotic, NMR, 6 structures==
-	<StructureSection load='1dsr' size='340' side='right'caption='[[1dsr~~]], [[NMR_Ensembles_of_Models \| 6 NMR models~~]]' scene=''>	+	<StructureSection load='1dsr' size='340' side='right'caption='[[1dsr]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1dsr]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Actinoplanes_sp. Actinoplanes sp.]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1DSR OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1DSR FirstGlance]. <br>		<table><tr><td colspan='2'>[[1dsr]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Actinoplanes_sp. Actinoplanes sp.]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1DSR OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1DSR FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat~~"><scene name='pdbligand=FA7:(2Z,4E)-7-METHYLOCTA-2,4-DIENOIC+ACID'>FA7</scene>, <scene name='pdbligand=MAN:ALPHA-D-MANNOSE'>MAN</scene></td></tr>~~	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=2TL:D-ALLOTHREONINE'>2TL</scene>, <scene name='pdbligand=AHB:BETA-HYDROXYASPARAGINE'>AHB</scene>, <scene name='pdbligand=ALO:ALLO-THREONINE'>ALO</scene>, <scene name='pdbligand=CHP:3-CHLORO-4-HYDROXYPHENYLGLYCINE'>CHP</scene>, <scene name='pdbligand=D4P:(2S)-AMINO(4-HYDROXYPHENYL)ACETIC+ACID'>D4P</scene>, <scene name='pdbligand=DAL:D-ALANINE'>DAL</scene>, <scene name='pdbligand=FA7:(2Z,4E)-7-METHYLOCTA-2,4-DIENOIC+ACID'>FA7</scene>, <scene name='pdbligand=GHP:(2R)-AMINO(4-HYDROXYPHENYL)ETHANOIC+ACID'>GHP</scene>, <scene name='pdbligand=MAN:ALPHA-D-MANNOSE'>MAN</scene>, <scene name='pdbligand=ORD:D-ORNITHINE'>ORD</scene>, <scene name='pdbligand=PRD_000222:RAMOPLANIN+A2'>PRD_000222</scene></td></tr>
-	~~<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat~~"><scene name='pdbligand=2TL:D-ALLOTHREONINE'>2TL</scene>, <scene name='pdbligand=AHB:BETA-HYDROXYASPARAGINE'>AHB</scene>, <scene name='pdbligand=ALO:ALLO-THREONINE'>ALO</scene>, <scene name='pdbligand=CHP:3-CHLORO-4-HYDROXYPHENYLGLYCINE'>CHP</scene>, <scene name='pdbligand=D4P:(2S)-AMINO(4-HYDROXYPHENYL)ACETIC+ACID'>D4P</scene>, <scene name='pdbligand=DAL:D-ALANINE'>DAL</scene>, <scene name='pdbligand=GHP:(2R)-AMINO(4-HYDROXYPHENYL)ETHANOIC+ACID'>GHP</scene>, <scene name='pdbligand=ORD:D-ORNITHINE'>ORD</scene></td></tr>	+
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1dsr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1dsr OCA], [https://pdbe.org/1dsr PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1dsr RCSB], [https://www.ebi.ac.uk/pdbsum/1dsr PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1dsr ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1dsr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1dsr OCA], [https://pdbe.org/1dsr PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1dsr RCSB], [https://www.ebi.ac.uk/pdbsum/1dsr PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1dsr ProSAT]</span></td></tr>
	</table>		</table>
Line 23:		Line 22:
	[[Category: Actinoplanes sp]]		[[Category: Actinoplanes sp]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Guba, W]]	+	[[Category: Guba W]]
-	[[Category: Kurz, M]]	+	[[Category: Kurz M]]
-	~~[[Category: Antibiotic]]~~	+
-	~~[[Category: Glycolipodespsipeptide]]~~	+
-	~~[[Category: Inhibitor]]~~	+
-	~~[[Category: Ramoplanin~~]]	+

OCA at 18:34, 10 March 2021

OCA — Wed, 10 Mar 2021 18:34:29 GMT

←Older revision		Revision as of 18:34, 10 March 2021
Line 3:		Line 3:
	<StructureSection load='1dsr' size='340' side='right'caption='[[1dsr]], [[NMR_Ensembles_of_Models \| 6 NMR models]]' scene=''>		<StructureSection load='1dsr' size='340' side='right'caption='[[1dsr]], [[NMR_Ensembles_of_Models \| 6 NMR models]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1dsr]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Actinoplanes_sp. Actinoplanes sp.]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1DSR OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1DSR FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1dsr]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Actinoplanes_sp. Actinoplanes sp.]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1DSR OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1DSR FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FA7:(2Z,4E)-7-METHYLOCTA-2,4-DIENOIC+ACID'>FA7</scene>, <scene name='pdbligand=MAN:ALPHA-D-MANNOSE'>MAN</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FA7:(2Z,4E)-7-METHYLOCTA-2,4-DIENOIC+ACID'>FA7</scene>, <scene name='pdbligand=MAN:ALPHA-D-MANNOSE'>MAN</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=2TL:D-ALLOTHREONINE'>2TL</scene>, <scene name='pdbligand=AHB:BETA-HYDROXYASPARAGINE'>AHB</scene>, <scene name='pdbligand=ALO:ALLO-THREONINE'>ALO</scene>, <scene name='pdbligand=CHP:3-CHLORO-4-HYDROXYPHENYLGLYCINE'>CHP</scene>, <scene name='pdbligand=D4P:(2S)-AMINO(4-HYDROXYPHENYL)ACETIC+ACID'>D4P</scene>, <scene name='pdbligand=DAL:D-ALANINE'>DAL</scene>, <scene name='pdbligand=GHP:(2R)-AMINO(4-HYDROXYPHENYL)ETHANOIC+ACID'>GHP</scene>, <scene name='pdbligand=ORD:D-ORNITHINE'>ORD</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=2TL:D-ALLOTHREONINE'>2TL</scene>, <scene name='pdbligand=AHB:BETA-HYDROXYASPARAGINE'>AHB</scene>, <scene name='pdbligand=ALO:ALLO-THREONINE'>ALO</scene>, <scene name='pdbligand=CHP:3-CHLORO-4-HYDROXYPHENYLGLYCINE'>CHP</scene>, <scene name='pdbligand=D4P:(2S)-AMINO(4-HYDROXYPHENYL)ACETIC+ACID'>D4P</scene>, <scene name='pdbligand=DAL:D-ALANINE'>DAL</scene>, <scene name='pdbligand=GHP:(2R)-AMINO(4-HYDROXYPHENYL)ETHANOIC+ACID'>GHP</scene>, <scene name='pdbligand=ORD:D-ORNITHINE'>ORD</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1dsr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1dsr OCA], [~~http~~://pdbe.org/1dsr PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=1dsr RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/1dsr PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=1dsr ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1dsr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1dsr OCA], [https://pdbe.org/1dsr PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1dsr RCSB], [https://www.ebi.ac.uk/pdbsum/1dsr PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1dsr ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 23:32, 5 June 2019

OCA — Wed, 05 Jun 2019 23:32:39 GMT

←Older revision		Revision as of 23:32, 5 June 2019
Line 1:		Line 1:

	==Peptide antibiotic, NMR, 6 structures==		==Peptide antibiotic, NMR, 6 structures==
-	<StructureSection load='1dsr' size='340' side='right' caption='[[1dsr]], [[NMR_Ensembles_of_Models \| 6 NMR models]]' scene=''>	+	<StructureSection load='1dsr' size='340' side='right'caption='[[1dsr]], [[NMR_Ensembles_of_Models \| 6 NMR models]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1dsr]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Actinoplanes_sp. Actinoplanes sp.]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1DSR OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1DSR FirstGlance]. <br>		<table><tr><td colspan='2'>[[1dsr]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Actinoplanes_sp. Actinoplanes sp.]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1DSR OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1DSR FirstGlance]. <br>
Line 22:		Line 22:
	</StructureSection>		</StructureSection>
	[[Category: Actinoplanes sp]]		[[Category: Actinoplanes sp]]
		+	[[Category: Large Structures]]
	[[Category: Guba, W]]		[[Category: Guba, W]]
	[[Category: Kurz, M]]		[[Category: Kurz, M]]

OCA at 04:06, 30 August 2017

OCA — Wed, 30 Aug 2017 04:06:38 GMT

←Older revision		Revision as of 04:06, 30 August 2017
Line 1:		Line 1:
		+
	==Peptide antibiotic, NMR, 6 structures==		==Peptide antibiotic, NMR, 6 structures==
	<StructureSection load='1dsr' size='340' side='right' caption='[[1dsr]], [[NMR_Ensembles_of_Models \| 6 NMR models]]' scene=''>		<StructureSection load='1dsr' size='340' side='right' caption='[[1dsr]], [[NMR_Ensembles_of_Models \| 6 NMR models]]' scene=''>
Line 5:		Line 6:
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FA7:(2Z,4E)-7-METHYLOCTA-2,4-DIENOIC+ACID'>FA7</scene>, <scene name='pdbligand=MAN:ALPHA-D-MANNOSE'>MAN</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FA7:(2Z,4E)-7-METHYLOCTA-2,4-DIENOIC+ACID'>FA7</scene>, <scene name='pdbligand=MAN:ALPHA-D-MANNOSE'>MAN</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=2TL:D-ALLOTHREONINE'>2TL</scene>, <scene name='pdbligand=AHB:BETA-HYDROXYASPARAGINE'>AHB</scene>, <scene name='pdbligand=ALO:ALLO-THREONINE'>ALO</scene>, <scene name='pdbligand=CHP:3-CHLORO-4-HYDROXYPHENYLGLYCINE'>CHP</scene>, <scene name='pdbligand=D4P:(2S)-AMINO(4-HYDROXYPHENYL)ACETIC+ACID'>D4P</scene>, <scene name='pdbligand=DAL:D-ALANINE'>DAL</scene>, <scene name='pdbligand=GHP:(2R)-AMINO(4-HYDROXYPHENYL)ETHANOIC+ACID'>GHP</scene>, <scene name='pdbligand=ORD:D-ORNITHINE'>ORD</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=2TL:D-ALLOTHREONINE'>2TL</scene>, <scene name='pdbligand=AHB:BETA-HYDROXYASPARAGINE'>AHB</scene>, <scene name='pdbligand=ALO:ALLO-THREONINE'>ALO</scene>, <scene name='pdbligand=CHP:3-CHLORO-4-HYDROXYPHENYLGLYCINE'>CHP</scene>, <scene name='pdbligand=D4P:(2S)-AMINO(4-HYDROXYPHENYL)ACETIC+ACID'>D4P</scene>, <scene name='pdbligand=DAL:D-ALANINE'>DAL</scene>, <scene name='pdbligand=GHP:(2R)-AMINO(4-HYDROXYPHENYL)ETHANOIC+ACID'>GHP</scene>, <scene name='pdbligand=ORD:D-ORNITHINE'>ORD</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1dsr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1dsr OCA], [http://pdbe.org/1dsr PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1dsr RCSB], [http://www.ebi.ac.uk/pdbsum/1dsr PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1dsr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1dsr OCA], [http://pdbe.org/1dsr PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1dsr RCSB], [http://www.ebi.ac.uk/pdbsum/1dsr PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1dsr ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 04:33, 11 September 2015

OCA — Fri, 11 Sep 2015 04:33:20 GMT

←Older revision		Revision as of 04:33, 11 September 2015
Line 5:		Line 5:
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FA7:(2Z,4E)-7-METHYLOCTA-2,4-DIENOIC+ACID'>FA7</scene>, <scene name='pdbligand=MAN:ALPHA-D-MANNOSE'>MAN</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FA7:(2Z,4E)-7-METHYLOCTA-2,4-DIENOIC+ACID'>FA7</scene>, <scene name='pdbligand=MAN:ALPHA-D-MANNOSE'>MAN</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=2TL:D-ALLOTHREONINE'>2TL</scene>, <scene name='pdbligand=AHB:BETA-HYDROXYASPARAGINE'>AHB</scene>, <scene name='pdbligand=ALO:ALLO-THREONINE'>ALO</scene>, <scene name='pdbligand=CHP:3-CHLORO-4-HYDROXYPHENYLGLYCINE'>CHP</scene>, <scene name='pdbligand=D4P:(2S)-AMINO(4-HYDROXYPHENYL)ACETIC+ACID'>D4P</scene>, <scene name='pdbligand=DAL:D-ALANINE'>DAL</scene>, <scene name='pdbligand=GHP:(2R)-AMINO(4-HYDROXYPHENYL)ETHANOIC+ACID'>GHP</scene>, <scene name='pdbligand=ORD:D-ORNITHINE'>ORD</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=2TL:D-ALLOTHREONINE'>2TL</scene>, <scene name='pdbligand=AHB:BETA-HYDROXYASPARAGINE'>AHB</scene>, <scene name='pdbligand=ALO:ALLO-THREONINE'>ALO</scene>, <scene name='pdbligand=CHP:3-CHLORO-4-HYDROXYPHENYLGLYCINE'>CHP</scene>, <scene name='pdbligand=D4P:(2S)-AMINO(4-HYDROXYPHENYL)ACETIC+ACID'>D4P</scene>, <scene name='pdbligand=DAL:D-ALANINE'>DAL</scene>, <scene name='pdbligand=GHP:(2R)-AMINO(4-HYDROXYPHENYL)ETHANOIC+ACID'>GHP</scene>, <scene name='pdbligand=ORD:D-ORNITHINE'>ORD</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1dsr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1dsr OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1dsr RCSB], [http://www.ebi.ac.uk/pdbsum/1dsr PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1dsr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1dsr OCA], [http://pdbe.org/1dsr PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1dsr RCSB], [http://www.ebi.ac.uk/pdbsum/1dsr PDBsum]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
Line 15:		Line 15:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 1dsr" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>

OCA at 04:58, 22 December 2014

OCA — Mon, 22 Dec 2014 04:58:05 GMT

←Older revision		Revision as of 04:58, 22 December 2014
Line 1:		Line 1:
-	~~{{STRUCTURE_1dsr~~\| ~~PDB~~=1dsr \| ~~SCENE~~= }}	+	==Peptide antibiotic, NMR, 6 structures==
-	===~~Peptide antibiotic~~, ~~NMR~~, ~~6 structures~~===	+	<StructureSection load='1dsr' size='340' side='right' caption='[[1dsr]], [[NMR_Ensembles_of_Models \| 6 NMR models]]' scene=''>
-	~~{{ABSTRACT_PUBMED_8823194}}~~	+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[1dsr]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Actinoplanes_sp. Actinoplanes sp.]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1DSR OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1DSR FirstGlance]. <br>
		+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FA7:(2Z,4E)-7-METHYLOCTA-2,4-DIENOIC+ACID'>FA7</scene>, <scene name='pdbligand=MAN:ALPHA-D-MANNOSE'>MAN</scene></td></tr>
		+	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=2TL:D-ALLOTHREONINE'>2TL</scene>, <scene name='pdbligand=AHB:BETA-HYDROXYASPARAGINE'>AHB</scene>, <scene name='pdbligand=ALO:ALLO-THREONINE'>ALO</scene>, <scene name='pdbligand=CHP:3-CHLORO-4-HYDROXYPHENYLGLYCINE'>CHP</scene>, <scene name='pdbligand=D4P:(2S)-AMINO(4-HYDROXYPHENYL)ACETIC+ACID'>D4P</scene>, <scene name='pdbligand=DAL:D-ALANINE'>DAL</scene>, <scene name='pdbligand=GHP:(2R)-AMINO(4-HYDROXYPHENYL)ETHANOIC+ACID'>GHP</scene>, <scene name='pdbligand=ORD:D-ORNITHINE'>ORD</scene></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1dsr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1dsr OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1dsr RCSB], [http://www.ebi.ac.uk/pdbsum/1dsr PDBsum]</span></td></tr>
		+	</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	The 3D structure of ramoplanin was studied by NMR spectroscopy in aqueous solution. A total of 320 interproton distances were determined from a NOESY spectrum and were used as restraints in distance geometry calculations. A structural refinement was carried out by molecular dynamics calculations in a solvent box. The structure of ramoplanin is characterized by two antiparallel beta-strands which are formed by the residues 2-7 and 10-14, respectively. The beta-strands are connected by six intramolecular hydrogen bonds and a reverse beta-turn which is formed by Thr8 and Phe9 (in positions i+1 and i+2, respectively). Residues 2 and 14 are connected by a loop consisting of Leu15, Ala16, Chp17, and the side chain of Asn2. Although residues 14-17 show the formation of a beta-turn, only the N-terminal end of the turn is directly connected to one of the beta-strands (Gly14), whereas the C-terminal end (Chp17) is linked via the side chain of Asn2. The 3D conformation of ramoplanin is also stabilized by a hydrophobic cluster of the aromatic sidechains of the residues 3, 9, and 17. This hydrophobic collapse leads to a U-shaped topology of the beta-shee: with the beta-turn at one end and the loop at the other end. The structure found for ramoplanin differs corsiderably from the published structure of ramoplanose which might be due to a smaller number of NOE distance restraints used in the previous study.

-	~~==About this Structure==~~	+	3D structure of ramoplanin: a potent inhibitor of bacterial cell wall synthesis.,Kurz M, Guba W Biochemistry. 1996 Sep 24;35(38):12570-5. PMID:8823194<ref>PMID:8823194</ref>
-	~~[[1dsr]] is a 1 chain~~ structure ~~with sequence from [http~~:~~//en~~.~~wikipedia~~.~~org/wiki/Actinoplanes_sp. Actinoplanes sp.]~~. ~~Full experimental information is available from [http~~:/~~/oca.weizmann.ac.il/oca-bin/ocashort?id=1DSR OCA].~~	+

-	==~~Reference~~==	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	~~<ref group="xtra">PMID:008823194</ref>~~<references ~~group="xtra"~~/><~~references~~/>	+	</div>
-	[[Category: Actinoplanes sp.]]	+	== References ==
-	[[Category: Guba, W.]]	+	<references/>
-	[[Category: Kurz, M.]]	+	__TOC__
		+	</StructureSection>
		+	[[Category: Actinoplanes sp]]
		+	[[Category: Guba, W]]
		+	[[Category: Kurz, M]]
	[[Category: Antibiotic]]		[[Category: Antibiotic]]
	[[Category: Glycolipodespsipeptide]]		[[Category: Glycolipodespsipeptide]]
	[[Category: Inhibitor]]		[[Category: Inhibitor]]
	[[Category: Ramoplanin]]		[[Category: Ramoplanin]]

OCA at 06:31, 10 April 2014

OCA — Thu, 10 Apr 2014 06:31:24 GMT

←Older revision		Revision as of 06:31, 10 April 2014
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-	[[Image:1dsr.png\|left\|200px]]
-
-	<!--
-	The line below this paragraph, containing "STRUCTURE_1dsr", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_1dsr\| PDB=1dsr \| SCENE= }}		{{STRUCTURE_1dsr\| PDB=1dsr \| SCENE= }}
-
	===Peptide antibiotic, NMR, 6 structures===		===Peptide antibiotic, NMR, 6 structures===
-
-
-	<!--
-	The line below this paragraph, {{ABSTRACT_PUBMED_8823194}}, adds the Publication Abstract to the page
-	(as it appears on PubMed at http://www.pubmed.gov), where 8823194 is the PubMed ID number.
-	-->
	{{ABSTRACT_PUBMED_8823194}}		{{ABSTRACT_PUBMED_8823194}}

Line 22:		Line 7:

	==Reference==		==Reference==
-	<ref group="xtra">PMID:008823194</ref><references group="xtra"/>	+	<ref group="xtra">PMID:008823194</ref><references group="xtra"/><references/>
	[[Category: Actinoplanes sp.]]		[[Category: Actinoplanes sp.]]
	[[Category: Guba, W.]]		[[Category: Guba, W.]]

OCA: Protected "1dsr" [edit=sysop:move=sysop]

OCA — Wed, 27 Jul 2011 04:53:30 GMT

Protected "1dsr" [edit=sysop:move=sysop]

←Older revision

Revision as of 04:53, 27 July 2011

OCA at 04:53, 27 July 2011

OCA — Wed, 27 Jul 2011 04:53:29 GMT

←Older revision		Revision as of 04:53, 27 July 2011
Line 1:		Line 1:
-	{{Seed}}
	[[Image:1dsr.png\|left\|200px]]		[[Image:1dsr.png\|left\|200px]]

Line 10:		Line 9:
	{{STRUCTURE_1dsr\| PDB=1dsr \| SCENE= }}		{{STRUCTURE_1dsr\| PDB=1dsr \| SCENE= }}

-	===~~PEPTIDE ANTIBIOTIC~~, NMR, 6 ~~STRUCTURES~~===	+	===Peptide antibiotic, NMR, 6 structures===


Line 20:		Line 19:

	==About this Structure==		==About this Structure==
-	Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1DSR OCA].	+	[[1dsr]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Actinoplanes_sp. Actinoplanes sp.]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1DSR OCA].

	==Reference==		==Reference==
-	~~3D structure of ramoplanin: a potent inhibitor of bacterial cell wall synthesis., Kurz M, Guba W, Biochemistry. 1996 Sep 24;35(38):12570-5.~~ PMID:[~~http~~:~~//www~~.~~ncbi.nlm.nih.gov/pubmed/8823194 8823194~~]	+	<ref group="xtra">PMID:008823194</ref><references group="xtra"/>
		+	[[Category: Actinoplanes sp.]]
	[[Category: Guba, W.]]		[[Category: Guba, W.]]
	[[Category: Kurz, M.]]		[[Category: Kurz, M.]]
	[[Category: Antibiotic]]		[[Category: Antibiotic]]
		+	[[Category: Glycolipodespsipeptide]]
	[[Category: Inhibitor]]		[[Category: Inhibitor]]
	[[Category: Ramoplanin]]		[[Category: Ramoplanin]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Jun 30 23:33:36 2008''