1dwr - Revision history

OCA at 08:08, 6 December 2023

OCA — Wed, 06 Dec 2023 08:08:27 GMT

←Older revision		Revision as of 08:08, 6 December 2023
Line 4:		Line 4:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1dwr]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Equus_caballus Equus caballus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1DWR OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1DWR FirstGlance]. <br>		<table><tr><td colspan='2'>[[1dwr]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Equus_caballus Equus caballus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1DWR OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1DWR FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CMO:CARBON+MONOXIDE'>CMO</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene~~></td></tr>~~	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.45Å</td></tr>
-	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1dws\|1dws]], [[1dwt\|1dwt]], [[1azi\|1azi]], [[1yma\|1yma]], [[1ymb\|1ymb]], [[1ymc\|1ymc]], [[1hrm\|1hrm]], [[1hsy\|1hsy]], [[1rse\|1rse]], [[1xch\|1xch]], [[1wla\|1wla]], [[1bje\|1bje]]</div></td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CMO:CARBON+MONOXIDE'>CMO</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1dwr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1dwr OCA], [https://pdbe.org/1dwr PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1dwr RCSB], [https://www.ebi.ac.uk/pdbsum/1dwr PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1dwr ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1dwr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1dwr OCA], [https://pdbe.org/1dwr PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1dwr RCSB], [https://www.ebi.ac.uk/pdbsum/1dwr PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1dwr ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[https://www.uniprot.org/uniprot/MYG_HORSE MYG_HORSE]] Serves as a reserve supply of oxygen and facilitates the movement of oxygen within muscles.	+	[https://www.uniprot.org/uniprot/MYG_HORSE MYG_HORSE] Serves as a reserve supply of oxygen and facilitates the movement of oxygen within muscles.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 38:		Line 38:
	[[Category: Equus caballus]]		[[Category: Equus caballus]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Berendzen, J]]	+	[[Category: Berendzen J]]
-	[[Category: Chu, K]]	+	[[Category: Chu K]]
-	[[Category: McMahon~~, B H~~]]	+	[[Category: McMahon BH]]
-	[[Category: Schlichting, I]]	+	[[Category: Schlichting I]]
-	[[Category: Sweet~~, R M~~]]	+	[[Category: Sweet RM]]
-	[[Category: Vojtechovsky, J]]	+	[[Category: Vojtechovsky J]]
-	~~[[Category: Oxygen transport]]~~	+
-	~~[[Category: Respiratory protein~~]]	+

OCA at 09:15, 8 September 2021

OCA — Wed, 08 Sep 2021 09:15:59 GMT

←Older revision		Revision as of 09:15, 8 September 2021
Line 3:		Line 3:
	<StructureSection load='1dwr' size='340' side='right'caption='[[1dwr]], [[Resolution\|resolution]] 1.45Å' scene=''>		<StructureSection load='1dwr' size='340' side='right'caption='[[1dwr]], [[Resolution\|resolution]] 1.45Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1dwr]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Equus_caballus Equus caballus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1DWR OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1DWR FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1dwr]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Equus_caballus Equus caballus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1DWR OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1DWR FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CMO:CARBON+MONOXIDE'>CMO</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CMO:CARBON+MONOXIDE'>CMO</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1dws\|1dws]], [[1dwt\|1dwt]], [[1azi\|1azi]], [[1yma\|1yma]], [[1ymb\|1ymb]], [[1ymc\|1ymc]], [[1hrm\|1hrm]], [[1hsy\|1hsy]], [[1rse\|1rse]], [[1xch\|1xch]], [[1wla\|1wla]], [[1bje\|1bje]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1dws\|1dws]], [[1dwt\|1dwt]], [[1azi\|1azi]], [[1yma\|1yma]], [[1ymb\|1ymb]], [[1ymc\|1ymc]], [[1hrm\|1hrm]], [[1hsy\|1hsy]], [[1rse\|1rse]], [[1xch\|1xch]], [[1wla\|1wla]], [[1bje\|1bje]]</div></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1dwr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1dwr OCA], [~~http~~://pdbe.org/1dwr PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=1dwr RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/1dwr PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=1dwr ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1dwr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1dwr OCA], [https://pdbe.org/1dwr PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1dwr RCSB], [https://www.ebi.ac.uk/pdbsum/1dwr PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1dwr ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[~~http~~://www.uniprot.org/uniprot/MYG_HORSE MYG_HORSE]] Serves as a reserve supply of oxygen and facilitates the movement of oxygen within muscles.	+	[[https://www.uniprot.org/uniprot/MYG_HORSE MYG_HORSE]] Serves as a reserve supply of oxygen and facilitates the movement of oxygen within muscles.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 31:		Line 31:

	==See Also==		==See Also==
-	*[[Molecular Playground/Myoglobin\|Molecular Playground/Myoglobin]]
	*[[Myoglobin 3D structures\|Myoglobin 3D structures]]		*[[Myoglobin 3D structures\|Myoglobin 3D structures]]
	== References ==		== References ==

OCA at 07:10, 27 November 2019

OCA — Wed, 27 Nov 2019 07:10:24 GMT

←Older revision		Revision as of 07:10, 27 November 2019
Line 32:		Line 32:
	==See Also==		==See Also==
	*[[Molecular Playground/Myoglobin\|Molecular Playground/Myoglobin]]		*[[Molecular Playground/Myoglobin\|Molecular Playground/Myoglobin]]
-	*[[Myoglobin\|Myoglobin]]	+	*[[Myoglobin 3D structures\|Myoglobin 3D structures]]
	== References ==		== References ==
	<references/>		<references/>

OCA at 11:29, 10 May 2019

OCA — Fri, 10 May 2019 11:29:31 GMT

←Older revision		Revision as of 11:29, 10 May 2019
Line 1:		Line 1:

	==MYOGLOBIN (HORSE HEART) WILD-TYPE COMPLEXED WITH CO==		==MYOGLOBIN (HORSE HEART) WILD-TYPE COMPLEXED WITH CO==
-	<StructureSection load='1dwr' size='340' side='right' caption='[[1dwr]], [[Resolution\|resolution]] 1.45Å' scene=''>	+	<StructureSection load='1dwr' size='340' side='right'caption='[[1dwr]], [[Resolution\|resolution]] 1.45Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1dwr]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Equus_caballus Equus caballus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1DWR OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1DWR FirstGlance]. <br>		<table><tr><td colspan='2'>[[1dwr]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Equus_caballus Equus caballus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1DWR OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1DWR FirstGlance]. <br>
Line 14:		Line 14:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dw/1dwr_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dw/1dwr_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
Line 38:		Line 38:
	</StructureSection>		</StructureSection>
	[[Category: Equus caballus]]		[[Category: Equus caballus]]
		+	[[Category: Large Structures]]
	[[Category: Berendzen, J]]		[[Category: Berendzen, J]]
	[[Category: Chu, K]]		[[Category: Chu, K]]

OCA at 04:01, 30 August 2017

OCA — Wed, 30 Aug 2017 04:01:20 GMT

←Older revision		Revision as of 04:01, 30 August 2017
Line 1:		Line 1:
		+
	==MYOGLOBIN (HORSE HEART) WILD-TYPE COMPLEXED WITH CO==		==MYOGLOBIN (HORSE HEART) WILD-TYPE COMPLEXED WITH CO==
	<StructureSection load='1dwr' size='340' side='right' caption='[[1dwr]], [[Resolution\|resolution]] 1.45Å' scene=''>		<StructureSection load='1dwr' size='340' side='right' caption='[[1dwr]], [[Resolution\|resolution]] 1.45Å' scene=''>
Line 5:		Line 6:
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CMO:CARBON+MONOXIDE'>CMO</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CMO:CARBON+MONOXIDE'>CMO</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1dws\|1dws]], [[1dwt\|1dwt]], [[1azi\|1azi]], [[1yma\|1yma]], [[1ymb\|1ymb]], [[1ymc\|1ymc]], [[1hrm\|1hrm]], [[1hsy\|1hsy]], [[1rse\|1rse]], [[1xch\|1xch]], [[1wla\|1wla]], [[1bje\|1bje]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1dws\|1dws]], [[1dwt\|1dwt]], [[1azi\|1azi]], [[1yma\|1yma]], [[1ymb\|1ymb]], [[1ymc\|1ymc]], [[1hrm\|1hrm]], [[1hsy\|1hsy]], [[1rse\|1rse]], [[1xch\|1xch]], [[1wla\|1wla]], [[1bje\|1bje]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1dwr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1dwr OCA], [http://pdbe.org/1dwr PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1dwr RCSB], [http://www.ebi.ac.uk/pdbsum/1dwr PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1dwr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1dwr OCA], [http://pdbe.org/1dwr PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1dwr RCSB], [http://www.ebi.ac.uk/pdbsum/1dwr PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1dwr ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 17:		Line 18:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1dwr ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
Line 39:		Line 40:
	[[Category: Berendzen, J]]		[[Category: Berendzen, J]]
	[[Category: Chu, K]]		[[Category: Chu, K]]
-	[[Category: ~~Mcmahon~~, B H]]	+	[[Category: McMahon, B H]]
	[[Category: Schlichting, I]]		[[Category: Schlichting, I]]
	[[Category: Sweet, R M]]		[[Category: Sweet, R M]]

OCA at 02:21, 12 September 2015

OCA — Sat, 12 Sep 2015 02:21:35 GMT

←Older revision		Revision as of 02:21, 12 September 2015
Line 5:		Line 5:
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CMO:CARBON+MONOXIDE'>CMO</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CMO:CARBON+MONOXIDE'>CMO</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1dws\|1dws]], [[1dwt\|1dwt]], [[1azi\|1azi]], [[1yma\|1yma]], [[1ymb\|1ymb]], [[1ymc\|1ymc]], [[1hrm\|1hrm]], [[1hsy\|1hsy]], [[1rse\|1rse]], [[1xch\|1xch]], [[1wla\|1wla]], [[1bje\|1bje]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1dws\|1dws]], [[1dwt\|1dwt]], [[1azi\|1azi]], [[1yma\|1yma]], [[1ymb\|1ymb]], [[1ymc\|1ymc]], [[1hrm\|1hrm]], [[1hsy\|1hsy]], [[1rse\|1rse]], [[1xch\|1xch]], [[1wla\|1wla]], [[1bje\|1bje]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1dwr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1dwr OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1dwr RCSB], [http://www.ebi.ac.uk/pdbsum/1dwr PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1dwr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1dwr OCA], [http://pdbe.org/1dwr PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1dwr RCSB], [http://www.ebi.ac.uk/pdbsum/1dwr PDBsum]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 27:		Line 27:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 1dwr" style="background-color:#fffaf0;"></div>

	==See Also==		==See Also==

OCA at 22:38, 25 December 2014

OCA — Thu, 25 Dec 2014 22:38:20 GMT

←Older revision		Revision as of 22:38, 25 December 2014
Line 7:		Line 7:
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1dwr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1dwr OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1dwr RCSB], [http://www.ebi.ac.uk/pdbsum/1dwr PDBsum]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1dwr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1dwr OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1dwr RCSB], [http://www.ebi.ac.uk/pdbsum/1dwr PDBsum]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/MYG_HORSE MYG_HORSE]] Serves as a reserve supply of oxygen and facilitates the movement of oxygen within muscles.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]

OCA at 00:28, 23 December 2014

OCA — Tue, 23 Dec 2014 00:28:14 GMT

←Older revision		Revision as of 00:28, 23 December 2014
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1dwr]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Equus_caballus Equus caballus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1DWR OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1DWR FirstGlance]. <br>		<table><tr><td colspan='2'>[[1dwr]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Equus_caballus Equus caballus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1DWR OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1DWR FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CMO:CARBON+MONOXIDE'>CMO</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CMO:CARBON+MONOXIDE'>CMO</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1dws\|1dws]], [[1dwt\|1dwt]], [[1azi\|1azi]], [[1yma\|1yma]], [[1ymb\|1ymb]], [[1ymc\|1ymc]], [[1hrm\|1hrm]], [[1hsy\|1hsy]], [[1rse\|1rse]], [[1xch\|1xch]], [[1wla\|1wla]], [[1bje\|1bje]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1dws\|1dws]], [[1dwt\|1dwt]], [[1azi\|1azi]], [[1yma\|1yma]], [[1ymb\|1ymb]], [[1ymc\|1ymc]], [[1hrm\|1hrm]], [[1hsy\|1hsy]], [[1rse\|1rse]], [[1xch\|1xch]], [[1wla\|1wla]], [[1bje\|1bje]]</td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1dwr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1dwr OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1dwr RCSB], [http://www.ebi.ac.uk/pdbsum/1dwr PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1dwr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1dwr OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1dwr RCSB], [http://www.ebi.ac.uk/pdbsum/1dwr PDBsum]</span></td></tr>
-	<table>	+	</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 34:		Line 34:
	</StructureSection>		</StructureSection>
	[[Category: Equus caballus]]		[[Category: Equus caballus]]
-	[[Category: Berendzen, J.]]	+	[[Category: Berendzen, J]]
-	[[Category: Chu, K.]]	+	[[Category: Chu, K]]
-	[[Category: Mcmahon, B H.]]	+	[[Category: Mcmahon, B H]]
-	[[Category: Schlichting, I.]]	+	[[Category: Schlichting, I]]
-	[[Category: Sweet, R M.]]	+	[[Category: Sweet, R M]]
-	[[Category: Vojtechovsky, J.]]	+	[[Category: Vojtechovsky, J]]
	[[Category: Oxygen transport]]		[[Category: Oxygen transport]]
	[[Category: Respiratory protein]]		[[Category: Respiratory protein]]

OCA at 17:27, 29 September 2014

OCA — Mon, 29 Sep 2014 17:27:47 GMT

←Older revision		Revision as of 17:27, 29 September 2014
Line 1:		Line 1:
-	~~{{STRUCTURE_1dwr\| PDB=1dwr \| SCENE= }}~~	+	==MYOGLOBIN (HORSE HEART) WILD-TYPE COMPLEXED WITH CO==
-	===MYOGLOBIN (HORSE HEART) WILD-TYPE COMPLEXED WITH CO===	+	<StructureSection load='1dwr' size='340' side='right' caption='[[1dwr]], [[Resolution\|resolution]] 1.45Å' scene=''>
-	~~{{ABSTRACT_PUBMED_10706294}}~~	+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[1dwr]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Equus_caballus Equus caballus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1DWR OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1DWR FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CMO:CARBON+MONOXIDE'>CMO</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene><br>
		+	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1dws\|1dws]], [[1dwt\|1dwt]], [[1azi\|1azi]], [[1yma\|1yma]], [[1ymb\|1ymb]], [[1ymc\|1ymc]], [[1hrm\|1hrm]], [[1hsy\|1hsy]], [[1rse\|1rse]], [[1xch\|1xch]], [[1wla\|1wla]], [[1bje\|1bje]]</td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1dwr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1dwr OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1dwr RCSB], [http://www.ebi.ac.uk/pdbsum/1dwr PDBsum]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dw/1dwr_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Small molecules such as NO, O2, CO or H2 are important biological ligands that bind to metalloproteins to function crucially in processes such as signal transduction, respiration and catalysis. A key issue for understanding the regulation of reaction mechanisms in these systems is whether ligands gain access to the binding sites through specific channels and docking sites, or by random diffusion through the protein matrix. A model system for studying this issue is myoglobin, a simple haem protein. Myoglobin has been studied extensively by spectroscopy, crystallography, computation and theory. It serves as an aid to oxygen diffusion but also binds carbon monoxide, a byproduct of endogenous haem catabolism. Molecular dynamics simulations, random mutagenesis and flash photolysis studies indicate that ligand migration occurs through a limited number of pathways involving docking sites. Here we report the 1.4 A resolution crystal structure of a ligand-binding intermediate in carbonmonoxy myoglobin that may have far-reaching implications for understanding the dynamics of ligand binding and catalysis.

-	~~==About this~~ Structure==	+	Structure of a ligand-binding intermediate in wild-type carbonmonoxy myoglobin.,Chu K, Vojtchovsky J, McMahon BH, Sweet RM, Berendzen J, Schlichting I Nature. 2000 Feb 24;403(6772):921-3. PMID:10706294<ref>PMID:10706294</ref>
-	~~[[1dwr]] is~~ a ~~1 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org/wiki/Equus_caballus Equus caballus]~~. ~~Full crystallographic information is available from [http~~://~~oca~~.~~weizmann~~.ac.il/~~oca-bin/ocashort?id=1DWR OCA].~~	+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>

	==See Also==		==See Also==
	*[[Molecular Playground/Myoglobin\|Molecular Playground/Myoglobin]]		*[[Molecular Playground/Myoglobin\|Molecular Playground/Myoglobin]]
	*[[Myoglobin\|Myoglobin]]		*[[Myoglobin\|Myoglobin]]
-		+	== References ==
-	==~~Reference~~==	+	<references/>
-	<~~ref group="xtra">PMID:010706294<~~/~~ref~~><~~ref group="xtra">PMID:009300804</ref><ref group="xtra">PMID:007935843</ref><ref group="xtra">PMID:019154126</ref><references group="xtra"~~/>	+	__TOC__
		+	</StructureSection>
	[[Category: Equus caballus]]		[[Category: Equus caballus]]
	[[Category: Berendzen, J.]]		[[Category: Berendzen, J.]]

OCA at 11:00, 11 March 2013

OCA — Mon, 11 Mar 2013 11:00:52 GMT

←Older revision		Revision as of 11:00, 11 March 2013
Line 1:		Line 1:
-	[[Image:1dwr.png\|left\|200px]]
-
	{{STRUCTURE_1dwr\| PDB=1dwr \| SCENE= }}		{{STRUCTURE_1dwr\| PDB=1dwr \| SCENE= }}
-
	===MYOGLOBIN (HORSE HEART) WILD-TYPE COMPLEXED WITH CO===		===MYOGLOBIN (HORSE HEART) WILD-TYPE COMPLEXED WITH CO===
-
	{{ABSTRACT_PUBMED_10706294}}		{{ABSTRACT_PUBMED_10706294}}