1dx9 - Revision history

OCA at 08:08, 6 December 2023

OCA — Wed, 06 Dec 2023 08:08:35 GMT

←Older revision		Revision as of 08:08, 6 December 2023
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	<StructureSection load='1dx9' size='340' side='right'caption='[[1dx9]], [[Resolution\|resolution]] 2.05Å' scene=''>		<StructureSection load='1dx9' size='340' side='right'caption='[[1dx9]], [[Resolution\|resolution]] 2.05Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1dx9]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Anabaena_pcc7119 Anabaena pcc7119~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1DX9 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1DX9 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1dx9]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Nostoc_sp._PCC_7119 Nostoc sp. PCC 7119]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1DX9 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1DX9 FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.05Å</td></tr>
-	<tr id='~~related~~'><td class="sblockLbl"><b>[[~~Related_structure~~\|~~Related~~:]]</b></td><td class="sblockDat"~~><div style~~=~~'overflow: auto; max-height: 3em;'~~>~~[[1rcf\|1rcf]], [[1ftg\|1ftg]], [[1flv\|1flv]]~~<~~/div></td></tr>~~	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-	~~<tr id~~='~~gene'><td class~~=~~"sblockLbl"><b>[[Gene\|Gene~~:~~]]</b~~></td>~~<td class="sblockDat">isiB ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1168 Anabaena PCC7119])~~</td></tr>	+
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1dx9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1dx9 OCA], [https://pdbe.org/1dx9 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1dx9 RCSB], [https://www.ebi.ac.uk/pdbsum/1dx9 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1dx9 ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1dx9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1dx9 OCA], [https://pdbe.org/1dx9 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1dx9 RCSB], [https://www.ebi.ac.uk/pdbsum/1dx9 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1dx9 ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[https://www.uniprot.org/uniprot/FLAV_NOSSO FLAV_NOSSO]] Low-potential electron donor to a number of redox enzymes.	+	[https://www.uniprot.org/uniprot/FLAV_NOSSO FLAV_NOSSO] Low-potential electron donor to a number of redox enzymes.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Anabaena pcc7119]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Romero, A~~]]	+	[[Category: Nostoc sp. PCC 7119]]
-	[[Category: ~~Sancho, J~~]]	+	[[Category: Romero A]]
-	[[Category: ~~Flavoprotein~~]]	+	[[Category: Sancho J]]

OCA at 09:49, 26 May 2021

OCA — Wed, 26 May 2021 09:49:42 GMT

←Older revision		Revision as of 09:49, 26 May 2021
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	<StructureSection load='1dx9' size='340' side='right'caption='[[1dx9]], [[Resolution\|resolution]] 2.05Å' scene=''>		<StructureSection load='1dx9' size='340' side='right'caption='[[1dx9]], [[Resolution\|resolution]] 2.05Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1dx9]] is a 4 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1DX9 OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1DX9 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1dx9]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Anabaena_pcc7119 Anabaena pcc7119]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1DX9 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1DX9 FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1rcf\|1rcf]], [[1ftg\|1ftg]], [[1flv\|1flv]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1rcf\|1rcf]], [[1ftg\|1ftg]], [[1flv\|1flv]]</div></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1dx9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1dx9 OCA], [~~http~~://pdbe.org/1dx9 PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=1dx9 RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/1dx9 PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=1dx9 ProSAT]</span></td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">isiB ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1168 Anabaena PCC7119])</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1dx9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1dx9 OCA], [https://pdbe.org/1dx9 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1dx9 RCSB], [https://www.ebi.ac.uk/pdbsum/1dx9 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1dx9 ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[~~http~~://www.uniprot.org/uniprot/~~FLAV_NOSS1 FLAV_NOSS1~~]] Low-potential electron donor to a number of redox enzymes.	+	[[https://www.uniprot.org/uniprot/FLAV_NOSSO FLAV_NOSSO]] Low-potential electron donor to a number of redox enzymes.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 36:		Line 37:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Anabaena pcc7119]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
	[[Category: Romero, A]]		[[Category: Romero, A]]
	[[Category: Sancho, J]]		[[Category: Sancho, J]]
	[[Category: Flavoprotein]]		[[Category: Flavoprotein]]

OCA at 07:33, 21 August 2019

OCA — Wed, 21 Aug 2019 07:33:16 GMT

←Older revision		Revision as of 07:33, 21 August 2019
Line 1:		Line 1:

	==W57A Apoflavodoxin from Anabaena==		==W57A Apoflavodoxin from Anabaena==
-	<StructureSection load='1dx9' size='340' side='right' caption='[[1dx9]], [[Resolution\|resolution]] 2.05Å' scene=''>	+	<StructureSection load='1dx9' size='340' side='right'caption='[[1dx9]], [[Resolution\|resolution]] 2.05Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1dx9]] is a 4 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1DX9 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1DX9 FirstGlance]. <br>		<table><tr><td colspan='2'>[[1dx9]] is a 4 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1DX9 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1DX9 FirstGlance]. <br>
Line 14:		Line 14:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dx/1dx9_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dx/1dx9_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
Line 29:		Line 29:
	</div>		</div>
	<div class="pdbe-citations 1dx9" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 1dx9" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[Flavodoxin 3D structures\|Flavodoxin 3D structures]]
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
	[[Category: Romero, A]]		[[Category: Romero, A]]
	[[Category: Sancho, J]]		[[Category: Sancho, J]]
	[[Category: Flavoprotein]]		[[Category: Flavoprotein]]

OCA at 06:53, 16 November 2017

OCA — Thu, 16 Nov 2017 06:53:08 GMT

←Older revision		Revision as of 06:53, 16 November 2017
Line 29:		Line 29:
	</div>		</div>
	<div class="pdbe-citations 1dx9" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 1dx9" style="background-color:#fffaf0;"></div>
-
-	==See Also==
-	*[[Flavodoxin\|Flavodoxin]]
	== References ==		== References ==
	<references/>		<references/>

OCA at 04:04, 30 August 2017

OCA — Wed, 30 Aug 2017 04:04:55 GMT

←Older revision		Revision as of 04:04, 30 August 2017
Line 1:		Line 1:
-	==W57A ~~APOFLAVODOXIN FROM ANABAENA~~==	+
		+	==W57A Apoflavodoxin from Anabaena==
	<StructureSection load='1dx9' size='340' side='right' caption='[[1dx9]], [[Resolution\|resolution]] 2.05Å' scene=''>		<StructureSection load='1dx9' size='340' side='right' caption='[[1dx9]], [[Resolution\|resolution]] 2.05Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1dx9]] is a 4 chain structure ~~with sequence from [http://en.wikipedia.org/wiki/Anabaena_pcc7119 Anabaena pcc7119]~~. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1DX9 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1DX9 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1dx9]] is a 4 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1DX9 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1DX9 FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1rcf\|1rcf]], [[1ftg\|1ftg]], [[1flv\|1flv]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1rcf\|1rcf]], [[1ftg\|1ftg]], [[1flv\|1flv]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1dx9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1dx9 OCA], [http://pdbe.org/1dx9 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1dx9 RCSB], [http://www.ebi.ac.uk/pdbsum/1dx9 PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1dx9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1dx9 OCA], [http://pdbe.org/1dx9 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1dx9 RCSB], [http://www.ebi.ac.uk/pdbsum/1dx9 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1dx9 ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 17:		Line 18:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1dx9 ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
Line 35:		Line 36:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Anabaena pcc7119]]
	[[Category: Romero, A]]		[[Category: Romero, A]]
	[[Category: Sancho, J]]		[[Category: Sancho, J]]
	[[Category: Flavoprotein]]		[[Category: Flavoprotein]]

OCA at 10:05, 11 September 2015

OCA — Fri, 11 Sep 2015 10:05:44 GMT

←Older revision		Revision as of 10:05, 11 September 2015
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	<StructureSection load='1dx9' size='340' side='right' caption='[[1dx9]], [[Resolution\|resolution]] 2.05Å' scene=''>		<StructureSection load='1dx9' size='340' side='right' caption='[[1dx9]], [[Resolution\|resolution]] 2.05Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1dx9]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Anabaena_sp.~~ Anabaena ~~sp.~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1DX9 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1DX9 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1dx9]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Anabaena_pcc7119 Anabaena pcc7119]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1DX9 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1DX9 FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1rcf\|1rcf]], [[1ftg\|1ftg]], [[1flv\|1flv]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1rcf\|1rcf]], [[1ftg\|1ftg]], [[1flv\|1flv]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1dx9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1dx9 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1dx9 RCSB], [http://www.ebi.ac.uk/pdbsum/1dx9 PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1dx9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1dx9 OCA], [http://pdbe.org/1dx9 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1dx9 RCSB], [http://www.ebi.ac.uk/pdbsum/1dx9 PDBsum]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[http://www.uniprot.org/uniprot/~~FLAV_ANASP FLAV_ANASP~~]] Low-potential electron donor to a number of redox enzymes.	+	[[http://www.uniprot.org/uniprot/FLAV_NOSS1 FLAV_NOSS1]] Low-potential electron donor to a number of redox enzymes.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 27:		Line 27:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 1dx9" style="background-color:#fffaf0;"></div>

	==See Also==		==See Also==
Line 34:		Line 35:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Anabaena sp]]	+	[[Category: Anabaena pcc7119]]
	[[Category: Romero, A]]		[[Category: Romero, A]]
	[[Category: Sancho, J]]		[[Category: Sancho, J]]
	[[Category: Flavoprotein]]		[[Category: Flavoprotein]]

OCA at 14:54, 25 December 2014

OCA — Thu, 25 Dec 2014 14:54:29 GMT

←Older revision		Revision as of 14:54, 25 December 2014
Line 7:		Line 7:
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1dx9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1dx9 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1dx9 RCSB], [http://www.ebi.ac.uk/pdbsum/1dx9 PDBsum]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1dx9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1dx9 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1dx9 RCSB], [http://www.ebi.ac.uk/pdbsum/1dx9 PDBsum]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/FLAV_ANASP FLAV_ANASP]] Low-potential electron donor to a number of redox enzymes.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]

OCA at 00:32, 23 December 2014

OCA — Tue, 23 Dec 2014 00:32:27 GMT

←Older revision		Revision as of 00:32, 23 December 2014
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1dx9]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Anabaena_sp. Anabaena sp.]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1DX9 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1DX9 FirstGlance]. <br>		<table><tr><td colspan='2'>[[1dx9]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Anabaena_sp. Anabaena sp.]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1DX9 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1DX9 FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1rcf\|1rcf]], [[1ftg\|1ftg]], [[1flv\|1flv]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1rcf\|1rcf]], [[1ftg\|1ftg]], [[1flv\|1flv]]</td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1dx9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1dx9 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1dx9 RCSB], [http://www.ebi.ac.uk/pdbsum/1dx9 PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1dx9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1dx9 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1dx9 RCSB], [http://www.ebi.ac.uk/pdbsum/1dx9 PDBsum]</span></td></tr>
-	<table>	+	</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 32:		Line 32:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Anabaena sp.]]	+	[[Category: Anabaena sp]]
-	[[Category: Romero, A.]]	+	[[Category: Romero, A]]
-	[[Category: Sancho, J.]]	+	[[Category: Sancho, J]]
	[[Category: Flavoprotein]]		[[Category: Flavoprotein]]

OCA at 10:39, 10 September 2014

OCA — Wed, 10 Sep 2014 10:39:58 GMT

←Older revision		Revision as of 10:39, 10 September 2014
Line 1:		Line 1:
-	[[~~Image:~~1dx9.~~png~~\|~~left~~\|200px]]	+	==W57A APOFLAVODOXIN FROM ANABAENA==
		+	<StructureSection load='1dx9' size='340' side='right' caption='[[1dx9]], [[Resolution\|resolution]] 2.05Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[1dx9]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Anabaena_sp. Anabaena sp.]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1DX9 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1DX9 FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene><br>
		+	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1rcf\|1rcf]], [[1ftg\|1ftg]], [[1flv\|1flv]]</td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1dx9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1dx9 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1dx9 RCSB], [http://www.ebi.ac.uk/pdbsum/1dx9 PDBsum]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dx/1dx9_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Many flavoproteins are non-covalent complexes between FMN and an apoprotein. To understand better the stability of flavoproteins, we have studied the energetics of the complex between FMN and the apoflavodoxin from Anabaena PCC 7119 by a combination of site-directed mutagenesis, titration calorimetry, equilibrium binding constant determinations, and x-ray crystallography. Comparison of the strength of the wild type and mutant apoflavodoxin-FMN complexes and that of the complexes between wild type apoflavodoxin and shortened FMN analogues (riboflavin and lumiflavin) allows the dissection of the binding energy into contributions associated with the different parts of the FMN molecule. The estimated contribution of the phosphate is greatest, at 7 kcal mol(-1); that of the isoalloxazine is of around 5-6 kcal mol(-1) (mainly due to interaction with Trp-57 and Tyr-94 in the apoprotein) and the ribityl contributes least: around 1 kcal mol(-1). The stabilization of the complex is both enthalpic and entropic although the enthalpy contribution is dominant. Both the phosphate and the isoalloxazine significantly contribute to the enthalpy of binding. The ionic strength does not have a large effect on the stability of the FMN complex because, although it weakens the phosphate interactions, it strengthens the isoalloxazine-protein hydrophobic interactions. Phosphate up to 100 mM does not affect the strength of the riboflavin complex, which suggests the isoalloxazine and phosphate binding sites may be independent in terms of binding energy. Interestingly, we find crystallographic evidence of flexibility in one of the loops (57-62) involved in isoalloxazine binding.

-	~~{{STRUCTURE_1dx9\| PDB=1dx9 \| SCENE= }}~~	+	Dissecting the energetics of the apoflavodoxin-FMN complex.,Lostao A, El Harrous M, Daoudi F, Romero A, Parody-Morreale A, Sancho J J Biol Chem. 2000 Mar 31;275(13):9518-26. PMID:10734100<ref>PMID:10734100</ref>

-	~~===W57A APOFLAVODOXIN FROM ANABAENA===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_10734100}}~~	+
-		+
-	~~==About this Structure==~~	+
-	~~[[1dx9]] is~~ a ~~4 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org/wiki/Anabaena_sp~~. ~~Anabaena sp.]. Full crystallographic information is available from [http:~~/~~/oca.weizmann.ac.il/oca-bin/ocashort?id=1DX9 OCA].~~	+

	==See Also==		==See Also==
	*[[Flavodoxin\|Flavodoxin]]		*[[Flavodoxin\|Flavodoxin]]
-		+	== References ==
-	==~~Reference~~==	+	<references/>
-	<~~ref group="xtra">PMID:010734100<~~/~~ref~~><~~references group="xtra"~~/>	+	__TOC__
		+	</StructureSection>
	[[Category: Anabaena sp.]]		[[Category: Anabaena sp.]]
	[[Category: Romero, A.]]		[[Category: Romero, A.]]
	[[Category: Sancho, J.]]		[[Category: Sancho, J.]]
	[[Category: Flavoprotein]]		[[Category: Flavoprotein]]

OCA at 18:02, 20 October 2012

OCA — Sat, 20 Oct 2012 18:02:44 GMT

←Older revision		Revision as of 18:02, 20 October 2012
Line 8:		Line 8:

	==About this Structure==		==About this Structure==
-	[[1dx9]] is a 4 chain structure ~~of [[Flavodoxin]]~~ with sequence from [http://en.wikipedia.org/wiki/Anabaena_sp. Anabaena sp.]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1DX9 OCA].	+	[[1dx9]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Anabaena_sp. Anabaena sp.]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1DX9 OCA].

	==See Also==		==See Also==