1eyg - Revision history

OCA at 07:08, 7 February 2024

OCA — Wed, 07 Feb 2024 07:08:29 GMT

←Older revision		Revision as of 07:08, 7 February 2024
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	<StructureSection load='1eyg' size='340' side='right'caption='[[1eyg]], [[Resolution\|resolution]] 2.80Å' scene=''>		<StructureSection load='1eyg' size='340' side='right'caption='[[1eyg]], [[Resolution\|resolution]] 2.80Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1eyg]] is a 6 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1EYG OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1EYG FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1eyg]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1EYG OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1EYG FirstGlance]. <br>
-	</td></tr><tr id='~~related~~'><td class="sblockLbl"><b>[[~~Related_structure~~\|~~Related~~:]]</b></td><td class="sblockDat"~~><div style~~=~~'overflow: auto; max~~-~~height: 3em;'>~~[[~~1kaw~~\|~~1kaw~~]]~~</div>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.8Å</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1eyg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1eyg OCA], [https://pdbe.org/1eyg PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1eyg RCSB], [https://www.ebi.ac.uk/pdbsum/1eyg PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1eyg ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1eyg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1eyg OCA], [https://pdbe.org/1eyg PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1eyg RCSB], [https://www.ebi.ac.uk/pdbsum/1eyg PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1eyg ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[https://www.uniprot.org/uniprot/SSB_ECOLI SSB_ECOLI]] This protein is essential for replication of the chromosomes and its single-stranded DNA phages. It is also involved in DNA recombination and repair.	+	[https://www.uniprot.org/uniprot/SSB_ECOLI SSB_ECOLI] This protein is essential for replication of the chromosomes and its single-stranded DNA phages. It is also involved in DNA recombination and repair.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
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	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1eyg ConSurf].		</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1eyg ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
-	<div style="background-color:#fffaf0;">
-	== Publication Abstract from PubMed ==
-	The structure of the homotetrameric DNA binding domain of the single stranded DNA binding protein from Escherichia coli (Eco SSB) bound to two 35-mer single stranded DNAs was determined to a resolution of 2.8 A. This structure describes the vast network of interactions that results in the extensive wrapping of single stranded DNA around the SSB tetramer and suggests a structural basis for its various binding modes.
-
-	Structure of the DNA binding domain of E. coli SSB bound to ssDNA.,Raghunathan S, Kozlov AG, Lohman TM, Waksman G Nat Struct Biol. 2000 Aug;7(8):648-52. PMID:10932248<ref>PMID:10932248</ref>
-
-	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	</div>
-	<div class="pdbe-citations 1eyg" style="background-color:#fffaf0;"></div>

	==See Also==		==See Also==
	*[[Single-stranded DNA-binding protein 3D structures\|Single-stranded DNA-binding protein 3D structures]]		*[[Single-stranded DNA-binding protein 3D structures\|Single-stranded DNA-binding protein 3D structures]]
-	== References ==
-	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Escherichia coli]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Raghunathan, S]]	+	[[Category: Raghunathan S]]
-	[[Category: Waksman, G]]	+	[[Category: Waksman G]]
-	~~[[Category: Binding mode]]~~	+
-	~~[[Category: Mad phasing]]~~	+
-	~~[[Category: Ob fold]]~~	+
-	~~[[Category: Protein-dna complex]]~~	+
-	~~[[Category: Replication-dna complex]]~~	+
-	~~[[Category: Se-met]]~~	+
-	~~[[Category: Ssb~~]]	+

OCA at 07:16, 17 March 2021

OCA — Wed, 17 Mar 2021 07:16:52 GMT

←Older revision		Revision as of 07:16, 17 March 2021
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	<StructureSection load='1eyg' size='340' side='right'caption='[[1eyg]], [[Resolution\|resolution]] 2.80Å' scene=''>		<StructureSection load='1eyg' size='340' side='right'caption='[[1eyg]], [[Resolution\|resolution]] 2.80Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1eyg]] is a 6 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1EYG OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1EYG FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1eyg]] is a 6 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1EYG OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1EYG FirstGlance]. <br>
-	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1kaw\|1kaw]]</td></tr>	+	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1kaw\|1kaw]]</div></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1eyg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1eyg OCA], [~~http~~://pdbe.org/1eyg PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=1eyg RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/1eyg PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=1eyg ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1eyg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1eyg OCA], [https://pdbe.org/1eyg PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1eyg RCSB], [https://www.ebi.ac.uk/pdbsum/1eyg PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1eyg ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[~~http~~://www.uniprot.org/uniprot/SSB_ECOLI SSB_ECOLI]] This protein is essential for replication of the chromosomes and its single-stranded DNA phages. It is also involved in DNA recombination and repair.	+	[[https://www.uniprot.org/uniprot/SSB_ECOLI SSB_ECOLI]] This protein is essential for replication of the chromosomes and its single-stranded DNA phages. It is also involved in DNA recombination and repair.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
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	==See Also==		==See Also==
-	*[[Single stranded binding protein\|Single stranded binding protein]]	+	*[[Single-stranded DNA-binding protein 3D structures\|Single-stranded DNA-binding protein 3D structures]]
-	*[[Single-stranded DNA-binding protein\|Single-stranded DNA-binding protein]]	+
	== References ==		== References ==
	<references/>		<references/>

OCA at 07:13, 12 June 2019

OCA — Wed, 12 Jun 2019 07:13:48 GMT

←Older revision		Revision as of 07:13, 12 June 2019
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	==Crystal structure of chymotryptic fragment of E. coli ssb bound to two 35-mer single strand DNAS==		==Crystal structure of chymotryptic fragment of E. coli ssb bound to two 35-mer single strand DNAS==
-	<StructureSection load='1eyg' size='340' side='right' caption='[[1eyg]], [[Resolution\|resolution]] 2.80Å' scene=''>	+	<StructureSection load='1eyg' size='340' side='right'caption='[[1eyg]], [[Resolution\|resolution]] 2.80Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1eyg]] is a 6 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1EYG OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1EYG FirstGlance]. <br>		<table><tr><td colspan='2'>[[1eyg]] is a 6 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1EYG OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1EYG FirstGlance]. <br>
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	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ey/1eyg_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ey/1eyg_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
Line 30:		Line 30:

	==See Also==		==See Also==
		+	*[[Single stranded binding protein\|Single stranded binding protein]]
	*[[Single-stranded DNA-binding protein\|Single-stranded DNA-binding protein]]		*[[Single-stranded DNA-binding protein\|Single-stranded DNA-binding protein]]
	== References ==		== References ==
Line 35:		Line 36:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
	[[Category: Raghunathan, S]]		[[Category: Raghunathan, S]]
	[[Category: Waksman, G]]		[[Category: Waksman, G]]

OCA at 03:55, 6 September 2017

OCA — Wed, 06 Sep 2017 03:55:56 GMT

←Older revision		Revision as of 03:55, 6 September 2017
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		+
	==Crystal structure of chymotryptic fragment of E. coli ssb bound to two 35-mer single strand DNAS==		==Crystal structure of chymotryptic fragment of E. coli ssb bound to two 35-mer single strand DNAS==
	<StructureSection load='1eyg' size='340' side='right' caption='[[1eyg]], [[Resolution\|resolution]] 2.80Å' scene=''>		<StructureSection load='1eyg' size='340' side='right' caption='[[1eyg]], [[Resolution\|resolution]] 2.80Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1eyg]] is a 6 chain structure ~~with sequence from [http://en.wikipedia.org/wiki/"bacillus_coli"_migula_1895 "bacillus coli" migula 1895]~~. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1EYG OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1EYG FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1eyg]] is a 6 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1EYG OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1EYG FirstGlance]. <br>
	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1kaw\|1kaw]]</td></tr>		</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1kaw\|1kaw]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1eyg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1eyg OCA], [http://pdbe.org/1eyg PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1eyg RCSB], [http://www.ebi.ac.uk/pdbsum/1eyg PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1eyg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1eyg OCA], [http://pdbe.org/1eyg PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1eyg RCSB], [http://www.ebi.ac.uk/pdbsum/1eyg PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1eyg ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
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	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1eyg ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Bacillus coli migula 1895]]
	[[Category: Raghunathan, S]]		[[Category: Raghunathan, S]]
	[[Category: Waksman, G]]		[[Category: Waksman, G]]

OCA at 17:06, 11 September 2015

OCA — Fri, 11 Sep 2015 17:06:10 GMT

←Older revision		Revision as of 17:06, 11 September 2015
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	<StructureSection load='1eyg' size='340' side='right' caption='[[1eyg]], [[Resolution\|resolution]] 2.80Å' scene=''>		<StructureSection load='1eyg' size='340' side='right' caption='[[1eyg]], [[Resolution\|resolution]] 2.80Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1eyg]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Escherichia_coli Escherichia~~ coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1EYG OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1EYG FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1eyg]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_coli"_migula_1895 "bacillus coli" migula 1895]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1EYG OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1EYG FirstGlance]. <br>
	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1kaw\|1kaw]]</td></tr>		</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1kaw\|1kaw]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1eyg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1eyg OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1eyg RCSB], [http://www.ebi.ac.uk/pdbsum/1eyg PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1eyg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1eyg OCA], [http://pdbe.org/1eyg PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1eyg RCSB], [http://www.ebi.ac.uk/pdbsum/1eyg PDBsum]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
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	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 1eyg" style="background-color:#fffaf0;"></div>

	==See Also==		==See Also==
Line 33:		Line 34:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Escherichia~~ coli]]	+	[[Category: Bacillus coli migula 1895]]
	[[Category: Raghunathan, S]]		[[Category: Raghunathan, S]]
	[[Category: Waksman, G]]		[[Category: Waksman, G]]

OCA at 19:23, 25 December 2014

OCA — Thu, 25 Dec 2014 19:23:22 GMT

←Older revision		Revision as of 19:23, 25 December 2014
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	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1eyg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1eyg OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1eyg RCSB], [http://www.ebi.ac.uk/pdbsum/1eyg PDBsum]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1eyg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1eyg OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1eyg RCSB], [http://www.ebi.ac.uk/pdbsum/1eyg PDBsum]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/SSB_ECOLI SSB_ECOLI]] This protein is essential for replication of the chromosomes and its single-stranded DNA phages. It is also involved in DNA recombination and repair.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]

OCA at 18:57, 22 December 2014

OCA — Mon, 22 Dec 2014 18:57:33 GMT

←Older revision		Revision as of 18:57, 22 December 2014
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1eyg]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1EYG OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1EYG FirstGlance]. <br>		<table><tr><td colspan='2'>[[1eyg]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1EYG OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1EYG FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1kaw\|1kaw]]</td></tr>	+	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1kaw\|1kaw]]</td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1eyg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1eyg OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1eyg RCSB], [http://www.ebi.ac.uk/pdbsum/1eyg PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1eyg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1eyg OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1eyg RCSB], [http://www.ebi.ac.uk/pdbsum/1eyg PDBsum]</span></td></tr>
-	<table>	+	</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 26:		Line 26:

	==See Also==		==See Also==
-	*[[Single stranded binding protein\|Single stranded binding protein]]
	*[[Single-stranded DNA-binding protein\|Single-stranded DNA-binding protein]]		*[[Single-stranded DNA-binding protein\|Single-stranded DNA-binding protein]]
	== References ==		== References ==
Line 33:		Line 32:
	</StructureSection>		</StructureSection>
	[[Category: Escherichia coli]]		[[Category: Escherichia coli]]
-	[[Category: Raghunathan, S.]]	+	[[Category: Raghunathan, S]]
-	[[Category: Waksman, G.]]	+	[[Category: Waksman, G]]
	[[Category: Binding mode]]		[[Category: Binding mode]]
	[[Category: Mad phasing]]		[[Category: Mad phasing]]

OCA at 08:57, 28 September 2014

OCA — Sun, 28 Sep 2014 08:57:47 GMT

←Older revision		Revision as of 08:57, 28 September 2014
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-	[[~~Image:~~1eyg.~~png~~\|~~left~~\|200px]]	+	==Crystal structure of chymotryptic fragment of E. coli ssb bound to two 35-mer single strand DNAS==
		+	<StructureSection load='1eyg' size='340' side='right' caption='[[1eyg]], [[Resolution\|resolution]] 2.80Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[1eyg]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1EYG OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1EYG FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1kaw\|1kaw]]</td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1eyg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1eyg OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1eyg RCSB], [http://www.ebi.ac.uk/pdbsum/1eyg PDBsum]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ey/1eyg_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	The structure of the homotetrameric DNA binding domain of the single stranded DNA binding protein from Escherichia coli (Eco SSB) bound to two 35-mer single stranded DNAs was determined to a resolution of 2.8 A. This structure describes the vast network of interactions that results in the extensive wrapping of single stranded DNA around the SSB tetramer and suggests a structural basis for its various binding modes.

-	~~{{STRUCTURE_1eyg\| PDB=1eyg \| SCENE= }}~~	+	Structure of the DNA binding domain of E. coli SSB bound to ssDNA.,Raghunathan S, Kozlov AG, Lohman TM, Waksman G Nat Struct Biol. 2000 Aug;7(8):648-52. PMID:10932248<ref>PMID:10932248</ref>

-	~~===Crystal structure~~ of ~~chymotryptic fragment~~ of E. ~~coli ssb bound to two 35-mer single strand DNAS===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>

-		+	==See Also==
-	==~~About this Structure~~==	+	*[[Single stranded binding protein\|Single stranded binding protein]]
-	[[~~1eyg~~]] ~~is a 6 chain structure with sequence from~~ [~~http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from~~ [~~http://oca.weizmann.ac.il/oca~~-~~bin/ocashort?id=1EYG OCA~~].	+	*[[Single-stranded DNA-binding protein\|Single-stranded DNA-binding protein]]
-		+	== References ==
-	==~~Reference~~==	+	<references/>
-	<~~ref group="xtra">PMID:010932248<~~/~~ref~~><~~references group="xtra"~~/>	+	__TOC__
		+	</StructureSection>
	[[Category: Escherichia coli]]		[[Category: Escherichia coli]]
	[[Category: Raghunathan, S.]]		[[Category: Raghunathan, S.]]

OCA: Protected "1eyg" [edit=sysop:move=sysop]

OCA — Wed, 14 Nov 2012 07:37:41 GMT

Protected "1eyg" [edit=sysop:move=sysop]

←Older revision

Revision as of 07:37, 14 November 2012

OCA at 07:37, 14 November 2012

OCA — Wed, 14 Nov 2012 07:37:38 GMT

←Older revision		Revision as of 07:37, 14 November 2012
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-	{{Seed}}
	[[Image:1eyg.png\|left\|200px]]		[[Image:1eyg.png\|left\|200px]]

-	<!--
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	{{STRUCTURE_1eyg\| PDB=1eyg \| SCENE= }}		{{STRUCTURE_1eyg\| PDB=1eyg \| SCENE= }}

	===Crystal structure of chymotryptic fragment of E. coli ssb bound to two 35-mer single strand DNAS===		===Crystal structure of chymotryptic fragment of E. coli ssb bound to two 35-mer single strand DNAS===

-
-	<!--
-	The line below this paragraph, {{ABSTRACT_PUBMED_10932248}}, adds the Publication Abstract to the page
-	(as it appears on PubMed at http://www.pubmed.gov), where 10932248 is the PubMed ID number.
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-	{{ABSTRACT_PUBMED_10932248}}

	==About this Structure==		==About this Structure==
-	~~1EYG~~ is a 6 ~~chains~~ structure ~~of sequences~~ from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1EYG OCA].	+	[[1eyg]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1EYG OCA].

	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~10932248~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:010932248</ref><references group="xtra"/>
	[[Category: Escherichia coli]]		[[Category: Escherichia coli]]
	[[Category: Raghunathan, S.]]		[[Category: Raghunathan, S.]]
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	[[Category: Ob fold]]		[[Category: Ob fold]]
	[[Category: Protein-dna complex]]		[[Category: Protein-dna complex]]
		+	[[Category: Replication-dna complex]]
	[[Category: Se-met]]		[[Category: Se-met]]
	[[Category: Ssb]]		[[Category: Ssb]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Feb 18 04:23:07 2009''