1fc6 - Revision history

OCA at 10:13, 20 March 2024

OCA — Wed, 20 Mar 2024 10:13:19 GMT

←Older revision		Revision as of 10:13, 20 March 2024
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	<StructureSection load='1fc6' size='340' side='right'caption='[[1fc6]], [[Resolution\|resolution]] 1.80Å' scene=''>		<StructureSection load='1fc6' size='340' side='right'caption='[[1fc6]], [[Resolution\|resolution]] 1.80Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1fc6]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Achnanthes_obliqua Achnanthes obliqua~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1FC6 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1FC6 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1fc6]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Tetradesmus_obliquus Tetradesmus obliquus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1FC6 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1FC6 FirstGlance]. <br>
-	</td></tr><tr id='~~NonStdRes~~'><td class="sblockLbl"><b>[[~~Non-Standard_Residue~~\|~~NonStd Res~~:]]</b></td><td class="sblockDat"~~><scene name~~=~~'pdbligand=MSE:SELENOMETHIONINE'>MSE</scene~~></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.8Å</td></tr>
-	<tr id='~~related~~'><td class="sblockLbl"><b>[[~~Related_structure~~\|~~Related~~:]]</b></td><td class="sblockDat"><~~div style~~='~~overflow~~: ~~auto; max-height: 3em;~~'>~~[[1fc7\|1fc7]], [[1fc9\|1fc9]], [[1fcf\|1fcf]]~~</~~div~~></td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1fc6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1fc6 OCA], [https://pdbe.org/1fc6 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1fc6 RCSB], [https://www.ebi.ac.uk/pdbsum/1fc6 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1fc6 ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1fc6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1fc6 OCA], [https://pdbe.org/1fc6 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1fc6 RCSB], [https://www.ebi.ac.uk/pdbsum/1fc6 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1fc6 ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[https://www.uniprot.org/uniprot/~~CTPA_ACUOB CTPA_ACUOB]~~] Protease involved in the C-terminal processing of the chloroplastic D1 protein of photosystem II. This proteolytic processing is necessary to allow the light-driven assembly of the tetranuclear manganese cluster, which is responsible for photosynthetic water oxidation.<ref>PMID:9252339</ref>	+	[https://www.uniprot.org/uniprot/CTPA_TETOB CTPA_TETOB] Protease involved in the C-terminal processing of the chloroplastic D1 protein of photosystem II. This proteolytic processing is necessary to allow the light-driven assembly of the tetranuclear manganese cluster, which is responsible for photosynthetic water oxidation.<ref>PMID:9252339</ref>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
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	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1fc6 ConSurf].		</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1fc6 ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
-	<div style="background-color:#fffaf0;">
-	== Publication Abstract from PubMed ==
-	We report here the first three-dimensional structure of the D1 C-terminal processing protease (D1P), which is encoded by the ctpA gene. This enzyme removes the C-terminal extension of the D1 polypeptide of photosystem II of oxygenic photosynthesis. Proteolytic processing is necessary to allow the light driven assembly of the tetranuclear manganese cluster, which is responsible for photosynthetic water oxidation. The X-ray structure of the Scenedesmus obliquus enzyme has been determined at 1.8 A resolution using the multiwavelength anomalous dispersion method. The enzyme is monomeric and is composed of three folding domains. The middle domain is topologically homologous to known PDZ motifs and is proposed to be the site at which the substrate C-terminus binds. The remainder of the substrate likely extends across the face of the enzyme, interacting at its scissile bond with the enzyme active site Ser 372 / Lys 397 catalytic dyad, which lies at the center of the protein at the interface of the three domains.
-
-	Crystal structures of the photosystem II D1 C-terminal processing protease.,Liao DI, Qian J, Chisholm DA, Jordan DB, Diner BA Nat Struct Biol. 2000 Sep;7(9):749-53. PMID:10966643<ref>PMID:10966643</ref>
-
-	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	</div>
-	<div class="pdbe-citations 1fc6" style="background-color:#fffaf0;"></div>

	==See Also==		==See Also==
-	*[[Photosystem II\|Photosystem II]]	+	*[[Photosystem II 3D structures\|Photosystem II 3D structures]]
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Achnanthes obliqua]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Chisholm, D A~~]]	+	[[Category: Tetradesmus obliquus]]
-	[[Category: ~~Diner, B A~~]]	+	[[Category: Chisholm DA]]
-	[[Category: ~~Jordan, D B~~]]	+	[[Category: Diner BA]]
-	[[Category: ~~Liao, D I~~]]	+	[[Category: Jordan DB]]
-	[[Category: ~~Qian, J~~]]	+	[[Category: Liao DI]]
-	[[Category: ~~D1 c-terminal processing protease]]~~	+	[[Category: Qian J]]
-	~~[[Category: Hydrolase]]~~	+
-	~~[[Category: Pdz domain]]~~	+
-	~~[[Category: Photosynthesis]]~~	+
-	~~[[Category: Photosystem ii]]~~	+
-	~~[[Category: Serine protease]]~~	+
-	~~[[Category: Serine-lysine catalytic dyad]]~~	+
-	~~[[Category: X-ray crystal structure~~]]	+

OCA at 15:11, 3 November 2021

OCA — Wed, 03 Nov 2021 15:11:16 GMT

←Older revision		Revision as of 15:11, 3 November 2021
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	<StructureSection load='1fc6' size='340' side='right'caption='[[1fc6]], [[Resolution\|resolution]] 1.80Å' scene=''>		<StructureSection load='1fc6' size='340' side='right'caption='[[1fc6]], [[Resolution\|resolution]] 1.80Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1fc6]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1FC6 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1FC6 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1fc6]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Achnanthes_obliqua Achnanthes obliqua]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1FC6 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1FC6 FirstGlance]. <br>
	</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1fc7\|1fc7]], [[1fc9\|1fc9]], [[1fcf\|1fcf]]</div></td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1fc7\|1fc7]], [[1fc9\|1fc9]], [[1fcf\|1fcf]]</div></td></tr>
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Achnanthes obliqua]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
	[[Category: Chisholm, D A]]		[[Category: Chisholm, D A]]

OCA at 07:03, 24 March 2021

OCA — Wed, 24 Mar 2021 07:03:11 GMT

←Older revision		Revision as of 07:03, 24 March 2021
Line 3:		Line 3:
	<StructureSection load='1fc6' size='340' side='right'caption='[[1fc6]], [[Resolution\|resolution]] 1.80Å' scene=''>		<StructureSection load='1fc6' size='340' side='right'caption='[[1fc6]], [[Resolution\|resolution]] 1.80Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1fc6]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1FC6 OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1FC6 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1fc6]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1FC6 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1FC6 FirstGlance]. <br>
	</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1fc7\|1fc7]], [[1fc9\|1fc9]], [[1fcf\|1fcf]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1fc7\|1fc7]], [[1fc9\|1fc9]], [[1fcf\|1fcf]]</div></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1fc6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1fc6 OCA], [~~http~~://pdbe.org/1fc6 PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=1fc6 RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/1fc6 PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=1fc6 ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1fc6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1fc6 OCA], [https://pdbe.org/1fc6 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1fc6 RCSB], [https://www.ebi.ac.uk/pdbsum/1fc6 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1fc6 ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[~~http~~://www.uniprot.org/uniprot/CTPA_ACUOB CTPA_ACUOB]] Protease involved in the C-terminal processing of the chloroplastic D1 protein of photosystem II. This proteolytic processing is necessary to allow the light-driven assembly of the tetranuclear manganese cluster, which is responsible for photosynthetic water oxidation.<ref>PMID:9252339</ref>	+	[[https://www.uniprot.org/uniprot/CTPA_ACUOB CTPA_ACUOB]] Protease involved in the C-terminal processing of the chloroplastic D1 protein of photosystem II. This proteolytic processing is necessary to allow the light-driven assembly of the tetranuclear manganese cluster, which is responsible for photosynthetic water oxidation.<ref>PMID:9252339</ref>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]

OCA at 07:03, 19 June 2019

OCA — Wed, 19 Jun 2019 07:03:39 GMT

←Older revision		Revision as of 07:03, 19 June 2019
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	==PHOTOSYSTEM II D1 C-TERMINAL PROCESSING PROTEASE==		==PHOTOSYSTEM II D1 C-TERMINAL PROCESSING PROTEASE==
-	<StructureSection load='1fc6' size='340' side='right' caption='[[1fc6]], [[Resolution\|resolution]] 1.80Å' scene=''>	+	<StructureSection load='1fc6' size='340' side='right'caption='[[1fc6]], [[Resolution\|resolution]] 1.80Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1fc6]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1FC6 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1FC6 FirstGlance]. <br>		<table><tr><td colspan='2'>[[1fc6]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1FC6 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1FC6 FirstGlance]. <br>
Line 14:		Line 14:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/fc/1fc6_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/fc/1fc6_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
	[[Category: Chisholm, D A]]		[[Category: Chisholm, D A]]
	[[Category: Diner, B A]]		[[Category: Diner, B A]]

OCA at 10:54, 13 September 2017

OCA — Wed, 13 Sep 2017 10:54:22 GMT

←Older revision		Revision as of 10:54, 13 September 2017
Line 1:		Line 1:
		+
	==PHOTOSYSTEM II D1 C-TERMINAL PROCESSING PROTEASE==		==PHOTOSYSTEM II D1 C-TERMINAL PROCESSING PROTEASE==
	<StructureSection load='1fc6' size='340' side='right' caption='[[1fc6]], [[Resolution\|resolution]] 1.80Å' scene=''>		<StructureSection load='1fc6' size='340' side='right' caption='[[1fc6]], [[Resolution\|resolution]] 1.80Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1fc6]] is a 1 chain structure ~~with sequence from [http://en.wikipedia.org/wiki/Acuob Acuob]~~. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1FC6 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1FC6 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1fc6]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1FC6 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1FC6 FirstGlance]. <br>
	</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1fc7\|1fc7]], [[1fc9\|1fc9]], [[1fcf\|1fcf]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1fc7\|1fc7]], [[1fc9\|1fc9]], [[1fcf\|1fcf]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1fc6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1fc6 OCA], [http://pdbe.org/1fc6 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1fc6 RCSB], [http://www.ebi.ac.uk/pdbsum/1fc6 PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1fc6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1fc6 OCA], [http://pdbe.org/1fc6 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1fc6 RCSB], [http://www.ebi.ac.uk/pdbsum/1fc6 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1fc6 ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 17:		Line 18:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1fc6 ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
Line 35:		Line 36:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Acuob]]
	[[Category: Chisholm, D A]]		[[Category: Chisholm, D A]]
	[[Category: Diner, B A]]		[[Category: Diner, B A]]

OCA at 01:30, 12 September 2015

OCA — Sat, 12 Sep 2015 01:30:07 GMT

←Older revision		Revision as of 01:30, 12 September 2015
Line 2:		Line 2:
	<StructureSection load='1fc6' size='340' side='right' caption='[[1fc6]], [[Resolution\|resolution]] 1.80Å' scene=''>		<StructureSection load='1fc6' size='340' side='right' caption='[[1fc6]], [[Resolution\|resolution]] 1.80Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1fc6]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Acutodesmus_obliquus Acutodesmus obliquus~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1FC6 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1FC6 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1fc6]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Acuob Acuob]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1FC6 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1FC6 FirstGlance]. <br>
	</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1fc7\|1fc7]], [[1fc9\|1fc9]], [[1fcf\|1fcf]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1fc7\|1fc7]], [[1fc9\|1fc9]], [[1fcf\|1fcf]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1fc6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1fc6 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1fc6 RCSB], [http://www.ebi.ac.uk/pdbsum/1fc6 PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1fc6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1fc6 OCA], [http://pdbe.org/1fc6 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1fc6 RCSB], [http://www.ebi.ac.uk/pdbsum/1fc6 PDBsum]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[http://www.uniprot.org/uniprot/~~O04073_SCEOB O04073_SCEOB~~]] Protease involved in the C-terminal processing of the chloroplastic D1 protein of photosystem II. This proteolytic processing is necessary to allow the light-driven assembly of the tetranuclear manganese cluster, which is responsible for photosynthetic water oxidation.<ref>PMID:9252339</ref>	+	[[http://www.uniprot.org/uniprot/CTPA_ACUOB CTPA_ACUOB]] Protease involved in the C-terminal processing of the chloroplastic D1 protein of photosystem II. This proteolytic processing is necessary to allow the light-driven assembly of the tetranuclear manganese cluster, which is responsible for photosynthetic water oxidation.<ref>PMID:9252339</ref>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 27:		Line 27:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 1fc6" style="background-color:#fffaf0;"></div>

	==See Also==		==See Also==
Line 34:		Line 35:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Acutodesmus obliquus~~]]	+	[[Category: Acuob]]
	[[Category: Chisholm, D A]]		[[Category: Chisholm, D A]]
	[[Category: Diner, B A]]		[[Category: Diner, B A]]

OCA at 22:00, 25 December 2014

OCA — Thu, 25 Dec 2014 22:00:57 GMT

←Older revision		Revision as of 22:00, 25 December 2014
Line 7:		Line 7:
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1fc6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1fc6 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1fc6 RCSB], [http://www.ebi.ac.uk/pdbsum/1fc6 PDBsum]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1fc6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1fc6 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1fc6 RCSB], [http://www.ebi.ac.uk/pdbsum/1fc6 PDBsum]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/O04073_SCEOB O04073_SCEOB]] Protease involved in the C-terminal processing of the chloroplastic D1 protein of photosystem II. This proteolytic processing is necessary to allow the light-driven assembly of the tetranuclear manganese cluster, which is responsible for photosynthetic water oxidation.<ref>PMID:9252339</ref>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]

OCA at 23:35, 22 December 2014

OCA — Mon, 22 Dec 2014 23:35:26 GMT

←Older revision		Revision as of 23:35, 22 December 2014
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1fc6]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Acutodesmus_obliquus Acutodesmus obliquus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1FC6 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1FC6 FirstGlance]. <br>		<table><tr><td colspan='2'>[[1fc6]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Acutodesmus_obliquus Acutodesmus obliquus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1FC6 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1FC6 FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>	+	</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1fc7\|1fc7]], [[1fc9\|1fc9]], [[1fcf\|1fcf]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1fc7\|1fc7]], [[1fc9\|1fc9]], [[1fcf\|1fcf]]</td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1fc6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1fc6 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1fc6 RCSB], [http://www.ebi.ac.uk/pdbsum/1fc6 PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1fc6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1fc6 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1fc6 RCSB], [http://www.ebi.ac.uk/pdbsum/1fc6 PDBsum]</span></td></tr>
-	<table>	+	</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 33:		Line 33:
	</StructureSection>		</StructureSection>
	[[Category: Acutodesmus obliquus]]		[[Category: Acutodesmus obliquus]]
-	[[Category: Chisholm, D A.]]	+	[[Category: Chisholm, D A]]
-	[[Category: Diner, B A.]]	+	[[Category: Diner, B A]]
-	[[Category: Jordan, D B.]]	+	[[Category: Jordan, D B]]
-	[[Category: Liao, D I.]]	+	[[Category: Liao, D I]]
-	[[Category: Qian, J.]]	+	[[Category: Qian, J]]
	[[Category: D1 c-terminal processing protease]]		[[Category: D1 c-terminal processing protease]]
	[[Category: Hydrolase]]		[[Category: Hydrolase]]

OCA at 11:10, 3 October 2014

OCA — Fri, 03 Oct 2014 11:10:03 GMT

←Older revision		Revision as of 11:10, 3 October 2014
Line 1:		Line 1:
-	[[~~Image:~~1fc6.~~png~~\|~~left~~\|200px]]	+	==PHOTOSYSTEM II D1 C-TERMINAL PROCESSING PROTEASE==
		+	<StructureSection load='1fc6' size='340' side='right' caption='[[1fc6]], [[Resolution\|resolution]] 1.80Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[1fc6]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Acutodesmus_obliquus Acutodesmus obliquus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1FC6 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1FC6 FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
		+	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1fc7\|1fc7]], [[1fc9\|1fc9]], [[1fcf\|1fcf]]</td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1fc6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1fc6 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1fc6 RCSB], [http://www.ebi.ac.uk/pdbsum/1fc6 PDBsum]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/fc/1fc6_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	We report here the first three-dimensional structure of the D1 C-terminal processing protease (D1P), which is encoded by the ctpA gene. This enzyme removes the C-terminal extension of the D1 polypeptide of photosystem II of oxygenic photosynthesis. Proteolytic processing is necessary to allow the light driven assembly of the tetranuclear manganese cluster, which is responsible for photosynthetic water oxidation. The X-ray structure of the Scenedesmus obliquus enzyme has been determined at 1.8 A resolution using the multiwavelength anomalous dispersion method. The enzyme is monomeric and is composed of three folding domains. The middle domain is topologically homologous to known PDZ motifs and is proposed to be the site at which the substrate C-terminus binds. The remainder of the substrate likely extends across the face of the enzyme, interacting at its scissile bond with the enzyme active site Ser 372 / Lys 397 catalytic dyad, which lies at the center of the protein at the interface of the three domains.

-	~~{{STRUCTURE_1fc6\| PDB=1fc6 \| SCENE= }}~~	+	Crystal structures of the photosystem II D1 C-terminal processing protease.,Liao DI, Qian J, Chisholm DA, Jordan DB, Diner BA Nat Struct Biol. 2000 Sep;7(9):749-53. PMID:10966643<ref>PMID:10966643</ref>

-	~~===PHOTOSYSTEM II D1 C-TERMINAL PROCESSING PROTEASE===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_10966643}}~~	+
-		+
-	~~==About this Structure==~~	+
-	~~[[1fc6]] is~~ a ~~1 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org/wiki/Acutodesmus_obliquus Acutodesmus obliquus]~~. ~~Full crystallographic information is available from [http:~~/~~/oca.weizmann.ac.il/oca-bin/ocashort?id=1FC6 OCA].~~	+

	==See Also==		==See Also==
	*[[Photosystem II\|Photosystem II]]		*[[Photosystem II\|Photosystem II]]
-		+	== References ==
-	==~~Reference~~==	+	<references/>
-	<~~ref group="xtra">PMID:010966643<~~/~~ref~~><~~references group="xtra"~~/>	+	__TOC__
		+	</StructureSection>
	[[Category: Acutodesmus obliquus]]		[[Category: Acutodesmus obliquus]]
	[[Category: Chisholm, D A.]]		[[Category: Chisholm, D A.]]

OCA at 22:09, 20 October 2012

OCA — Sat, 20 Oct 2012 22:09:41 GMT

←Older revision		Revision as of 22:09, 20 October 2012
Line 8:		Line 8:

	==About this Structure==		==About this Structure==
-	[[1fc6]] is a 1 chain structure ~~of [[Photosystem II]]~~ with sequence from [http://en.wikipedia.org/wiki/Acutodesmus_obliquus Acutodesmus obliquus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1FC6 OCA].	+	[[1fc6]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Acutodesmus_obliquus Acutodesmus obliquus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1FC6 OCA].

	==See Also==		==See Also==