1fk0 - Revision history

OCA at 07:10, 25 October 2023

OCA — Wed, 25 Oct 2023 07:10:02 GMT

←Older revision		Revision as of 07:10, 25 October 2023
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	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1fk0]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Zea_mays Zea mays]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1FK0 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1FK0 FirstGlance]. <br>		<table><tr><td colspan='2'>[[1fk0]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Zea_mays Zea mays]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1FK0 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1FK0 FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=DKA:DECANOIC+ACID'>DKA</scene>~~, ~~<scene name='pdbligand=FMT:FORMIC+ACID'>FMT</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.8Å</td></tr>
-	<tr id='~~related~~'><td class="sblockLbl"><b>[[~~Related_structure~~\|~~Related~~:]]</b></td><td class="sblockDat"><~~div style~~='~~overflow~~: ~~auto; max-height: 3em;~~'>~~[[1mzl\|1mzl]]~~, ~~[[1mzm\|1mzm]], [[1fk1\|1fk1]], [[1fk2\|1fk2]], [[1fk3\|1fk3]], [[1fk4\|1fk4]], [[1fk5\|1fk5]], [[1fk6\|1fk6]], [[1fk7\|1fk7]]~~</~~div~~></td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=DKA:DECANOIC+ACID'>DKA</scene>, <scene name='pdbligand=FMT:FORMIC+ACID'>FMT</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1fk0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1fk0 OCA], [https://pdbe.org/1fk0 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1fk0 RCSB], [https://www.ebi.ac.uk/pdbsum/1fk0 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1fk0 ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1fk0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1fk0 OCA], [https://pdbe.org/1fk0 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1fk0 RCSB], [https://www.ebi.ac.uk/pdbsum/1fk0 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1fk0 ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[https://www.uniprot.org/uniprot/NLTP_MAIZE NLTP_MAIZE]] Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues.	+	[https://www.uniprot.org/uniprot/NLTP_MAIZE NLTP_MAIZE] Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 35:		Line 35:
	[[Category: Large Structures]]		[[Category: Large Structures]]
	[[Category: Zea mays]]		[[Category: Zea mays]]
-	[[Category: Han~~, G W~~]]	+	[[Category: Han GW]]
-	[[Category: Lee~~, J Y~~]]	+	[[Category: Lee JY]]
-	[[Category: Shin~~, D H~~]]	+	[[Category: Shin DH]]
-	[[Category: Song~~, H K~~]]	+	[[Category: Song HK]]
-	[[Category: Suh~~, S W]]~~	+	[[Category: Suh SW]]
-	~~[[Category: Lipid transport]]~~	+
-	~~[[Category: Protein-lipid complex~~]]	+

OCA at 11:10, 28 July 2021

OCA — Wed, 28 Jul 2021 11:10:41 GMT

←Older revision		Revision as of 11:10, 28 July 2021
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	<StructureSection load='1fk0' size='340' side='right'caption='[[1fk0]], [[Resolution\|resolution]] 1.80Å' scene=''>		<StructureSection load='1fk0' size='340' side='right'caption='[[1fk0]], [[Resolution\|resolution]] 1.80Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1fk0]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Zea_mays Zea mays]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1FK0 OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1FK0 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1fk0]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Zea_mays Zea mays]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1FK0 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1FK0 FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=DKA:DECANOIC+ACID'>DKA</scene>, <scene name='pdbligand=FMT:FORMIC+ACID'>FMT</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=DKA:DECANOIC+ACID'>DKA</scene>, <scene name='pdbligand=FMT:FORMIC+ACID'>FMT</scene></td></tr>
-	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1mzl\|1mzl]], [[1mzm\|1mzm]], [[1fk1\|1fk1]], [[1fk2\|1fk2]], [[1fk3\|1fk3]], [[1fk4\|1fk4]], [[1fk5\|1fk5]], [[1fk6\|1fk6]], [[1fk7\|1fk7]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1mzl\|1mzl]], [[1mzm\|1mzm]], [[1fk1\|1fk1]], [[1fk2\|1fk2]], [[1fk3\|1fk3]], [[1fk4\|1fk4]], [[1fk5\|1fk5]], [[1fk6\|1fk6]], [[1fk7\|1fk7]]</div></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1fk0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1fk0 OCA], [~~http~~://pdbe.org/1fk0 PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=1fk0 RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/1fk0 PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=1fk0 ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1fk0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1fk0 OCA], [https://pdbe.org/1fk0 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1fk0 RCSB], [https://www.ebi.ac.uk/pdbsum/1fk0 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1fk0 ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[~~http~~://www.uniprot.org/uniprot/NLTP_MAIZE NLTP_MAIZE]] Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues.	+	[[https://www.uniprot.org/uniprot/NLTP_MAIZE NLTP_MAIZE]] Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]

OCA at 08:40, 23 October 2019

OCA — Wed, 23 Oct 2019 08:40:41 GMT

←Older revision		Revision as of 08:40, 23 October 2019
Line 1:		Line 1:

	==STRUCTURAL BASIS OF NON-SPECIFIC LIPID BINDING IN MAIZE LIPID-TRANSFER PROTEIN COMPLEXES WITH CAPRIC ACID REVEALED BY HIGH-RESOLUTION X-RAY CRYSTALLOGRAPHY==		==STRUCTURAL BASIS OF NON-SPECIFIC LIPID BINDING IN MAIZE LIPID-TRANSFER PROTEIN COMPLEXES WITH CAPRIC ACID REVEALED BY HIGH-RESOLUTION X-RAY CRYSTALLOGRAPHY==
-	<StructureSection load='1fk0' size='340' side='right' caption='[[1fk0]], [[Resolution\|resolution]] 1.80Å' scene=''>	+	<StructureSection load='1fk0' size='340' side='right'caption='[[1fk0]], [[Resolution\|resolution]] 1.80Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1fk0]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Zea_mays Zea mays]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1FK0 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1FK0 FirstGlance]. <br>		<table><tr><td colspan='2'>[[1fk0]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Zea_mays Zea mays]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1FK0 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1FK0 FirstGlance]. <br>
Line 33:		Line 33:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
	[[Category: Zea mays]]		[[Category: Zea mays]]
	[[Category: Han, G W]]		[[Category: Han, G W]]

OCA at 09:29, 27 December 2017

OCA — Wed, 27 Dec 2017 09:29:13 GMT

←Older revision		Revision as of 09:29, 27 December 2017
Line 1:		Line 1:
		+
	==STRUCTURAL BASIS OF NON-SPECIFIC LIPID BINDING IN MAIZE LIPID-TRANSFER PROTEIN COMPLEXES WITH CAPRIC ACID REVEALED BY HIGH-RESOLUTION X-RAY CRYSTALLOGRAPHY==		==STRUCTURAL BASIS OF NON-SPECIFIC LIPID BINDING IN MAIZE LIPID-TRANSFER PROTEIN COMPLEXES WITH CAPRIC ACID REVEALED BY HIGH-RESOLUTION X-RAY CRYSTALLOGRAPHY==
	<StructureSection load='1fk0' size='340' side='right' caption='[[1fk0]], [[Resolution\|resolution]] 1.80Å' scene=''>		<StructureSection load='1fk0' size='340' side='right' caption='[[1fk0]], [[Resolution\|resolution]] 1.80Å' scene=''>
Line 5:		Line 6:
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=DKA:DECANOIC+ACID'>DKA</scene>, <scene name='pdbligand=FMT:FORMIC+ACID'>FMT</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=DKA:DECANOIC+ACID'>DKA</scene>, <scene name='pdbligand=FMT:FORMIC+ACID'>FMT</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1mzl\|1mzl]], [[1mzm\|1mzm]], [[1fk1\|1fk1]], [[1fk2\|1fk2]], [[1fk3\|1fk3]], [[1fk4\|1fk4]], [[1fk5\|1fk5]], [[1fk6\|1fk6]], [[1fk7\|1fk7]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1mzl\|1mzl]], [[1mzm\|1mzm]], [[1fk1\|1fk1]], [[1fk2\|1fk2]], [[1fk3\|1fk3]], [[1fk4\|1fk4]], [[1fk5\|1fk5]], [[1fk6\|1fk6]], [[1fk7\|1fk7]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1fk0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1fk0 OCA], [http://pdbe.org/1fk0 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1fk0 RCSB], [http://www.ebi.ac.uk/pdbsum/1fk0 PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1fk0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1fk0 OCA], [http://pdbe.org/1fk0 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1fk0 RCSB], [http://www.ebi.ac.uk/pdbsum/1fk0 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1fk0 ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 13:		Line 14:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/fk/1fk0_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/fk/1fk0_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>

OCA at 12:59, 9 February 2016

OCA — Tue, 09 Feb 2016 12:59:53 GMT

←Older revision		Revision as of 12:59, 9 February 2016
Line 17:		Line 17:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1fk0 ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 22:29, 10 September 2015

OCA — Thu, 10 Sep 2015 22:29:57 GMT

←Older revision		Revision as of 22:29, 10 September 2015
Line 5:		Line 5:
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=DKA:DECANOIC+ACID'>DKA</scene>, <scene name='pdbligand=FMT:FORMIC+ACID'>FMT</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=DKA:DECANOIC+ACID'>DKA</scene>, <scene name='pdbligand=FMT:FORMIC+ACID'>FMT</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1mzl\|1mzl]], [[1mzm\|1mzm]], [[1fk1\|1fk1]], [[1fk2\|1fk2]], [[1fk3\|1fk3]], [[1fk4\|1fk4]], [[1fk5\|1fk5]], [[1fk6\|1fk6]], [[1fk7\|1fk7]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1mzl\|1mzl]], [[1mzm\|1mzm]], [[1fk1\|1fk1]], [[1fk2\|1fk2]], [[1fk3\|1fk3]], [[1fk4\|1fk4]], [[1fk5\|1fk5]], [[1fk6\|1fk6]], [[1fk7\|1fk7]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1fk0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1fk0 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1fk0 RCSB], [http://www.ebi.ac.uk/pdbsum/1fk0 PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1fk0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1fk0 OCA], [http://pdbe.org/1fk0 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1fk0 RCSB], [http://www.ebi.ac.uk/pdbsum/1fk0 PDBsum]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 27:		Line 27:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 1fk0" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>

OCA at 06:58, 25 December 2014

OCA — Thu, 25 Dec 2014 06:58:48 GMT

←Older revision		Revision as of 06:58, 25 December 2014
Line 7:		Line 7:
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1fk0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1fk0 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1fk0 RCSB], [http://www.ebi.ac.uk/pdbsum/1fk0 PDBsum]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1fk0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1fk0 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1fk0 RCSB], [http://www.ebi.ac.uk/pdbsum/1fk0 PDBsum]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/NLTP_MAIZE NLTP_MAIZE]] Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]

OCA at 18:27, 22 December 2014

OCA — Mon, 22 Dec 2014 18:27:38 GMT

←Older revision		Revision as of 18:27, 22 December 2014
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1fk0]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Zea_mays Zea mays]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1FK0 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1FK0 FirstGlance]. <br>		<table><tr><td colspan='2'>[[1fk0]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Zea_mays Zea mays]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1FK0 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1FK0 FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=DKA:DECANOIC+ACID'>DKA</scene>, <scene name='pdbligand=FMT:FORMIC+ACID'>FMT</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=DKA:DECANOIC+ACID'>DKA</scene>, <scene name='pdbligand=FMT:FORMIC+ACID'>FMT</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1mzl\|1mzl]], [[1mzm\|1mzm]], [[1fk1\|1fk1]], [[1fk2\|1fk2]], [[1fk3\|1fk3]], [[1fk4\|1fk4]], [[1fk5\|1fk5]], [[1fk6\|1fk6]], [[1fk7\|1fk7]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1mzl\|1mzl]], [[1mzm\|1mzm]], [[1fk1\|1fk1]], [[1fk2\|1fk2]], [[1fk3\|1fk3]], [[1fk4\|1fk4]], [[1fk5\|1fk5]], [[1fk6\|1fk6]], [[1fk7\|1fk7]]</td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1fk0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1fk0 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1fk0 RCSB], [http://www.ebi.ac.uk/pdbsum/1fk0 PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1fk0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1fk0 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1fk0 RCSB], [http://www.ebi.ac.uk/pdbsum/1fk0 PDBsum]</span></td></tr>
-	<table>	+	</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 30:		Line 30:
	</StructureSection>		</StructureSection>
	[[Category: Zea mays]]		[[Category: Zea mays]]
-	[[Category: Han, G W.]]	+	[[Category: Han, G W]]
-	[[Category: Lee, J Y.]]	+	[[Category: Lee, J Y]]
-	[[Category: Shin, D H.]]	+	[[Category: Shin, D H]]
-	[[Category: Song, H K.]]	+	[[Category: Song, H K]]
-	[[Category: Suh, S W.]]	+	[[Category: Suh, S W]]
	[[Category: Lipid transport]]		[[Category: Lipid transport]]
	[[Category: Protein-lipid complex]]		[[Category: Protein-lipid complex]]

OCA at 08:31, 28 September 2014

OCA — Sun, 28 Sep 2014 08:31:12 GMT

←Older revision		Revision as of 08:31, 28 September 2014
Line 1:		Line 1:
-	[[~~Image:~~1fk0.~~png~~\|~~left~~\|200px]]	+	==STRUCTURAL BASIS OF NON-SPECIFIC LIPID BINDING IN MAIZE LIPID-TRANSFER PROTEIN COMPLEXES WITH CAPRIC ACID REVEALED BY HIGH-RESOLUTION X-RAY CRYSTALLOGRAPHY==
		+	<StructureSection load='1fk0' size='340' side='right' caption='[[1fk0]], [[Resolution\|resolution]] 1.80Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[1fk0]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Zea_mays Zea mays]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1FK0 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1FK0 FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=DKA:DECANOIC+ACID'>DKA</scene>, <scene name='pdbligand=FMT:FORMIC+ACID'>FMT</scene><br>
		+	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1mzl\|1mzl]], [[1mzm\|1mzm]], [[1fk1\|1fk1]], [[1fk2\|1fk2]], [[1fk3\|1fk3]], [[1fk4\|1fk4]], [[1fk5\|1fk5]], [[1fk6\|1fk6]], [[1fk7\|1fk7]]</td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1fk0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1fk0 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1fk0 RCSB], [http://www.ebi.ac.uk/pdbsum/1fk0 PDBsum]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/fk/1fk0_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Non-specific lipid-transfer proteins (nsLTPs) are involved in the movement of phospholipids, glycolipids, fatty acids, and steroids between membranes. Several structures of plant nsLTPs have been determined both by X-ray crystallography and nuclear magnetic resonance. However, the detailed structural basis of the non-specific binding of hydrophobic ligands by nsLTPs is still poorly understood. In order to gain a better understanding of the structural basis of the non-specific binding of hydrophobic ligands by nsLTPs and to investigate the plasticity of the fatty acid binding cavity in nsLTPs, seven high-resolution (between 1.3 A and 1.9 A) crystal structures have been determined. These depict the nsLTP from maize seedlings in complex with an array of fatty acids.A detailed comparison of the structures of maize nsLTP in complex with various ligands reveals a new binding mode in an nsLTP-oleate complex which has not been seen before. Furthermore, in the caprate complex, the ligand binds to the protein cavity in two orientations with equal occupancy. The volume of the hydrophobic cavity in the nsLTP from maize shows some variation depending on the size of the bound ligands.The structural plasticity of the ligand binding cavity and the predominant involvement of non-specific van der Waals interactions with the hydrophobic tail of the ligands provide a structural explanation for the non-specificity of maize nsLTP. The hydrophobic cavity accommodates various ligands from C10 to C18. The C18:1 ricinoleate with its hydroxyl group hydrogen bonding to Ala68 possibly mimics cutin monomer binding which is of biological importance. Some of the myristate binding sites in human serum albumin resemble the maize nsLTP, implying the importance of a helical bundle in accommodating the non-specific binding of fatty acids.

-	~~{{STRUCTURE_1fk0\| PDB=1fk0 \| SCENE= }}~~	+	Structural basis of non-specific lipid binding in maize lipid-transfer protein complexes revealed by high-resolution X-ray crystallography.,Han GW, Lee JY, Song HK, Chang C, Min K, Moon J, Shin DH, Kopka ML, Sawaya MR, Yuan HS, Kim TD, Choe J, Lim D, Moon HJ, Suh SW J Mol Biol. 2001 Apr 27;308(2):263-78. PMID:11327766<ref>PMID:11327766</ref>

-	~~===STRUCTURAL BASIS OF NON-SPECIFIC LIPID BINDING IN MAIZE LIPID-TRANSFER PROTEIN COMPLEXES WITH CAPRIC ACID REVEALED BY HIGH-RESOLUTION X-RAY CRYSTALLOGRAPHY===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_11327766}}~~	+	== References ==
-		+	<references/>
-	~~==About this Structure==~~	+	__TOC__
-	~~[[1fk0]] is~~ a ~~1 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org/wiki/Zea_mays Zea mays]~~. ~~Full crystallographic information is available from [http:~~/~~/oca.weizmann.ac.il/oca-bin/ocashort?id=1FK0 OCA].~~	+	</StructureSection>
-		+
-	==~~Reference~~==	+
-	<~~ref group="xtra">PMID:011327766<~~/~~ref~~><~~references group="xtra"~~/>	+
	[[Category: Zea mays]]		[[Category: Zea mays]]
	[[Category: Han, G W.]]		[[Category: Han, G W.]]

OCA: Protected "1fk0" [edit=sysop:move=sysop]

OCA — Wed, 21 Nov 2012 10:11:44 GMT

Protected "1fk0" [edit=sysop:move=sysop]

←Older revision

Revision as of 10:11, 21 November 2012