1fmj - Revision history

OCA at 07:16, 7 February 2024

OCA — Wed, 07 Feb 2024 07:16:24 GMT

←Older revision		Revision as of 07:16, 7 February 2024
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	<StructureSection load='1fmj' size='340' side='right'caption='[[1fmj]], [[Resolution\|resolution]] 2.00Å' scene=''>		<StructureSection load='1fmj' size='340' side='right'caption='[[1fmj]], [[Resolution\|resolution]] 2.00Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1fmj]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1FMJ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1FMJ FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1fmj]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Spodoptera_frugiperda Spodoptera frugiperda]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1FMJ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1FMJ FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=A3P:ADENOSINE-3-5-DIPHOSPHATE'>A3P</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=HG:MERCURY+(II)+ION'>HG</scene>, <scene name='pdbligand=RTL:RETINOL'>RTL</scene~~></td></tr>~~	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2Å</td></tr>
-	~~<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1fml\|1fml]]</div~~></td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=A3P:ADENOSINE-3-5-DIPHOSPHATE'>A3P</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=HG:MERCURY+(II)+ION'>HG</scene>, <scene name='pdbligand=RTL:RETINOL'>RTL</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1fmj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1fmj OCA], [https://pdbe.org/1fmj PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1fmj RCSB], [https://www.ebi.ac.uk/pdbsum/1fmj PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1fmj ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1fmj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1fmj OCA], [https://pdbe.org/1fmj PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1fmj RCSB], [https://www.ebi.ac.uk/pdbsum/1fmj PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1fmj ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/Q26490_SPOFR Q26490_SPOFR]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
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	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1fmj ConSurf].		</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1fmj ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
-	<div style="background-color:#fffaf0;">
-	== Publication Abstract from PubMed ==
-	We report here the crystal structure of retinol dehydratase, an enzyme that catalyzes the synthesis of anhydroretinol. The enzyme is a member of the sulfotransferase superfamily and its crystal structure reveals the insertion of a helical lid into a canonical sulfotransferase fold. Site-directed mutations demonstrate that this inserted lid is necessary for anhydroretinol production but not for sulfonation; thus, insertion of a helical lid can convert a sulfotransferase into a dehydratase.
-
-	A helical lid converts a sulfotransferase to a dehydratase.,Pakhomova S, Kobayashi M, Buck J, Newcomer ME Nat Struct Biol. 2001 May;8(5):447-51. PMID:11323722<ref>PMID:11323722</ref>
-
-	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	</div>
-	<div class="pdbe-citations 1fmj" style="background-color:#fffaf0;"></div>
-	== References ==
-	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Buck, J~~]]	+	[[Category: Spodoptera frugiperda]]
-	[[Category: ~~Kobayashi, M~~]]	+	[[Category: Buck J]]
-	[[Category: ~~Newcomer,~~ M E]]	+	[[Category: Kobayashi M]]
-	[[Category: ~~Pakhomova, S~~]]	+	[[Category: Newcomer ME]]
-	[[Category: ~~5'-diphosphate]]~~	+	[[Category: Pakhomova S]]
-	~~[[Category: Adenosine 3ss']]~~	+
-	~~[[Category: Dehydratase]]~~	+
-	~~[[Category: Retinol]]~~	+
-	~~[[Category: Sulfotransferase]]~~	+
-	~~[[Category: Transferase~~]]	+

OCA at 07:06, 24 March 2021

OCA — Wed, 24 Mar 2021 07:06:10 GMT

←Older revision		Revision as of 07:06, 24 March 2021
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	<StructureSection load='1fmj' size='340' side='right'caption='[[1fmj]], [[Resolution\|resolution]] 2.00Å' scene=''>		<StructureSection load='1fmj' size='340' side='right'caption='[[1fmj]], [[Resolution\|resolution]] 2.00Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1fmj]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1FMJ OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1FMJ FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1fmj]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1FMJ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1FMJ FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=A3P:ADENOSINE-3-5-DIPHOSPHATE'>A3P</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=HG:MERCURY+(II)+ION'>HG</scene>, <scene name='pdbligand=RTL:RETINOL'>RTL</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=A3P:ADENOSINE-3-5-DIPHOSPHATE'>A3P</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=HG:MERCURY+(II)+ION'>HG</scene>, <scene name='pdbligand=RTL:RETINOL'>RTL</scene></td></tr>
-	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1fml\|1fml]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1fml\|1fml]]</div></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1fmj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1fmj OCA], [~~http~~://pdbe.org/1fmj PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=1fmj RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/1fmj PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=1fmj ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1fmj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1fmj OCA], [https://pdbe.org/1fmj PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1fmj RCSB], [https://www.ebi.ac.uk/pdbsum/1fmj PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1fmj ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==

OCA at 07:08, 19 June 2019

OCA — Wed, 19 Jun 2019 07:08:19 GMT

←Older revision		Revision as of 07:08, 19 June 2019
Line 1:		Line 1:

	==CRYSTAL STRUCTURE OF MERCURY DERIVATIVE OF RETINOL DEHYDRATASE IN A COMPLEX WITH RETINOL AND PAP==		==CRYSTAL STRUCTURE OF MERCURY DERIVATIVE OF RETINOL DEHYDRATASE IN A COMPLEX WITH RETINOL AND PAP==
-	<StructureSection load='1fmj' size='340' side='right' caption='[[1fmj]], [[Resolution\|resolution]] 2.00Å' scene=''>	+	<StructureSection load='1fmj' size='340' side='right'caption='[[1fmj]], [[Resolution\|resolution]] 2.00Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1fmj]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1FMJ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1FMJ FirstGlance]. <br>		<table><tr><td colspan='2'>[[1fmj]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1FMJ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1FMJ FirstGlance]. <br>
Line 12:		Line 12:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/fm/1fmj_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/fm/1fmj_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
Line 31:		Line 31:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
	[[Category: Buck, J]]		[[Category: Buck, J]]
	[[Category: Kobayashi, M]]		[[Category: Kobayashi, M]]
Line 36:		Line 37:
	[[Category: Pakhomova, S]]		[[Category: Pakhomova, S]]
	[[Category: 5'-diphosphate]]		[[Category: 5'-diphosphate]]
-	[[Category: Adenosine 3s']]	+	[[Category: Adenosine 3ss']]
	[[Category: Dehydratase]]		[[Category: Dehydratase]]
	[[Category: Retinol]]		[[Category: Retinol]]
	[[Category: Sulfotransferase]]		[[Category: Sulfotransferase]]
	[[Category: Transferase]]		[[Category: Transferase]]

OCA at 10:57, 13 September 2017

OCA — Wed, 13 Sep 2017 10:57:50 GMT

←Older revision		Revision as of 10:57, 13 September 2017
Line 1:		Line 1:
		+
	==CRYSTAL STRUCTURE OF MERCURY DERIVATIVE OF RETINOL DEHYDRATASE IN A COMPLEX WITH RETINOL AND PAP==		==CRYSTAL STRUCTURE OF MERCURY DERIVATIVE OF RETINOL DEHYDRATASE IN A COMPLEX WITH RETINOL AND PAP==
	<StructureSection load='1fmj' size='340' side='right' caption='[[1fmj]], [[Resolution\|resolution]] 2.00Å' scene=''>		<StructureSection load='1fmj' size='340' side='right' caption='[[1fmj]], [[Resolution\|resolution]] 2.00Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1fmj]] is a 2 chain structure ~~with sequence from [http://en.wikipedia.org/wiki/Fall_armyworm Fall armyworm]~~. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1FMJ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1FMJ FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1fmj]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1FMJ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1FMJ FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=A3P:ADENOSINE-3-5-DIPHOSPHATE'>A3P</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=HG:MERCURY+(II)+ION'>HG</scene>, <scene name='pdbligand=RTL:RETINOL'>RTL</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=A3P:ADENOSINE-3-5-DIPHOSPHATE'>A3P</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=HG:MERCURY+(II)+ION'>HG</scene>, <scene name='pdbligand=RTL:RETINOL'>RTL</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1fml\|1fml]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1fml\|1fml]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1fmj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1fmj OCA], [http://pdbe.org/1fmj PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1fmj RCSB], [http://www.ebi.ac.uk/pdbsum/1fmj PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1fmj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1fmj OCA], [http://pdbe.org/1fmj PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1fmj RCSB], [http://www.ebi.ac.uk/pdbsum/1fmj PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1fmj ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 15:		Line 16:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1fmj ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
Line 30:		Line 31:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Fall armyworm]]
	[[Category: Buck, J]]		[[Category: Buck, J]]
	[[Category: Kobayashi, M]]		[[Category: Kobayashi, M]]

OCA at 00:41, 12 September 2015

OCA — Sat, 12 Sep 2015 00:41:33 GMT

←Older revision		Revision as of 00:41, 12 September 2015
Line 2:		Line 2:
	<StructureSection load='1fmj' size='340' side='right' caption='[[1fmj]], [[Resolution\|resolution]] 2.00Å' scene=''>		<StructureSection load='1fmj' size='340' side='right' caption='[[1fmj]], [[Resolution\|resolution]] 2.00Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1fmj]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Spodoptera_frugiperda Spodoptera frugiperda~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1FMJ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1FMJ FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1fmj]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Fall_armyworm Fall armyworm]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1FMJ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1FMJ FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=A3P:ADENOSINE-3-5-DIPHOSPHATE'>A3P</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=HG:MERCURY+(II)+ION'>HG</scene>, <scene name='pdbligand=RTL:RETINOL'>RTL</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=A3P:ADENOSINE-3-5-DIPHOSPHATE'>A3P</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=HG:MERCURY+(II)+ION'>HG</scene>, <scene name='pdbligand=RTL:RETINOL'>RTL</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1fml\|1fml]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1fml\|1fml]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1fmj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1fmj OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1fmj RCSB], [http://www.ebi.ac.uk/pdbsum/1fmj PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1fmj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1fmj OCA], [http://pdbe.org/1fmj PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1fmj RCSB], [http://www.ebi.ac.uk/pdbsum/1fmj PDBsum]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 25:		Line 25:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 1fmj" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Spodoptera frugiperda~~]]	+	[[Category: Fall armyworm]]
	[[Category: Buck, J]]		[[Category: Buck, J]]
	[[Category: Kobayashi, M]]		[[Category: Kobayashi, M]]

OCA at 22:52, 22 December 2014

OCA — Mon, 22 Dec 2014 22:52:21 GMT

←Older revision		Revision as of 22:52, 22 December 2014
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1fmj]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Spodoptera_frugiperda Spodoptera frugiperda]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1FMJ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1FMJ FirstGlance]. <br>		<table><tr><td colspan='2'>[[1fmj]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Spodoptera_frugiperda Spodoptera frugiperda]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1FMJ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1FMJ FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=A3P:ADENOSINE-3-5-DIPHOSPHATE'>A3P</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=HG:MERCURY+(II)+ION'>HG</scene>, <scene name='pdbligand=RTL:RETINOL'>RTL</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=A3P:ADENOSINE-3-5-DIPHOSPHATE'>A3P</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=HG:MERCURY+(II)+ION'>HG</scene>, <scene name='pdbligand=RTL:RETINOL'>RTL</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1fml\|1fml]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1fml\|1fml]]</td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1fmj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1fmj OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1fmj RCSB], [http://www.ebi.ac.uk/pdbsum/1fmj PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1fmj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1fmj OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1fmj RCSB], [http://www.ebi.ac.uk/pdbsum/1fmj PDBsum]</span></td></tr>
-	<table>	+	</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 30:		Line 30:
	</StructureSection>		</StructureSection>
	[[Category: Spodoptera frugiperda]]		[[Category: Spodoptera frugiperda]]
-	[[Category: Buck, J.]]	+	[[Category: Buck, J]]
-	[[Category: Kobayashi, M.]]	+	[[Category: Kobayashi, M]]
-	[[Category: Newcomer, M E.]]	+	[[Category: Newcomer, M E]]
-	[[Category: Pakhomova, S.]]	+	[[Category: Pakhomova, S]]
	[[Category: 5'-diphosphate]]		[[Category: 5'-diphosphate]]
	[[Category: Adenosine 3s']]		[[Category: Adenosine 3s']]

OCA at 12:38, 28 September 2014

OCA — Sun, 28 Sep 2014 12:38:14 GMT

←Older revision		Revision as of 12:38, 28 September 2014
Line 1:		Line 1:
-	[[~~Image:~~1fmj.~~png~~\|~~left~~\|200px]]	+	==CRYSTAL STRUCTURE OF MERCURY DERIVATIVE OF RETINOL DEHYDRATASE IN A COMPLEX WITH RETINOL AND PAP==
		+	<StructureSection load='1fmj' size='340' side='right' caption='[[1fmj]], [[Resolution\|resolution]] 2.00Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[1fmj]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Spodoptera_frugiperda Spodoptera frugiperda]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1FMJ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1FMJ FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=A3P:ADENOSINE-3-5-DIPHOSPHATE'>A3P</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=HG:MERCURY+(II)+ION'>HG</scene>, <scene name='pdbligand=RTL:RETINOL'>RTL</scene><br>
		+	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1fml\|1fml]]</td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1fmj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1fmj OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1fmj RCSB], [http://www.ebi.ac.uk/pdbsum/1fmj PDBsum]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/fm/1fmj_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	We report here the crystal structure of retinol dehydratase, an enzyme that catalyzes the synthesis of anhydroretinol. The enzyme is a member of the sulfotransferase superfamily and its crystal structure reveals the insertion of a helical lid into a canonical sulfotransferase fold. Site-directed mutations demonstrate that this inserted lid is necessary for anhydroretinol production but not for sulfonation; thus, insertion of a helical lid can convert a sulfotransferase into a dehydratase.

-	~~{{STRUCTURE_1fmj\| PDB=1fmj \| SCENE= }}~~	+	A helical lid converts a sulfotransferase to a dehydratase.,Pakhomova S, Kobayashi M, Buck J, Newcomer ME Nat Struct Biol. 2001 May;8(5):447-51. PMID:11323722<ref>PMID:11323722</ref>

-	~~===CRYSTAL STRUCTURE OF MERCURY DERIVATIVE OF RETINOL DEHYDRATASE IN A COMPLEX WITH RETINOL AND PAP===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_11323722}}~~	+	== References ==
-		+	<references/>
-	~~==About this Structure==~~	+	__TOC__
-	~~[[1fmj]] is~~ a ~~2 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org/wiki/Spodoptera_frugiperda Spodoptera frugiperda]~~. ~~Full crystallographic information is available from [http:~~/~~/oca.weizmann.ac.il/oca-bin/ocashort?id=1FMJ OCA].~~	+	</StructureSection>
-		+
-	==~~Reference~~==	+
-	<~~ref group="xtra">PMID:011323722<~~/~~ref~~><~~references group="xtra"~~/>	+
	[[Category: Spodoptera frugiperda]]		[[Category: Spodoptera frugiperda]]
	[[Category: Buck, J.]]		[[Category: Buck, J.]]

OCA: Protected "1fmj" [edit=sysop:move=sysop]

OCA — Wed, 21 Nov 2012 10:16:10 GMT

Protected "1fmj" [edit=sysop:move=sysop]

←Older revision

Revision as of 10:16, 21 November 2012

OCA at 10:16, 21 November 2012

OCA — Wed, 21 Nov 2012 10:16:07 GMT

←Older revision		Revision as of 10:16, 21 November 2012
Line 1:		Line 1:
-	{{Seed}}
	[[Image:1fmj.png\|left\|200px]]		[[Image:1fmj.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_1fmj", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_1fmj\| PDB=1fmj \| SCENE= }}		{{STRUCTURE_1fmj\| PDB=1fmj \| SCENE= }}

	===CRYSTAL STRUCTURE OF MERCURY DERIVATIVE OF RETINOL DEHYDRATASE IN A COMPLEX WITH RETINOL AND PAP===		===CRYSTAL STRUCTURE OF MERCURY DERIVATIVE OF RETINOL DEHYDRATASE IN A COMPLEX WITH RETINOL AND PAP===

-
-	<!--
-	The line below this paragraph, {{ABSTRACT_PUBMED_11323722}}, adds the Publication Abstract to the page
-	(as it appears on PubMed at http://www.pubmed.gov), where 11323722 is the PubMed ID number.
-	-->
	{{ABSTRACT_PUBMED_11323722}}		{{ABSTRACT_PUBMED_11323722}}

	==About this Structure==		==About this Structure==
-	~~1FMJ~~ is a 2 ~~chains~~ structure ~~of sequences~~ from [http://en.wikipedia.org/wiki/Spodoptera_frugiperda Spodoptera frugiperda]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1FMJ OCA].	+	[[1fmj]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Spodoptera_frugiperda Spodoptera frugiperda]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1FMJ OCA].

	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~11323722~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:011323722</ref><references group="xtra"/>
	[[Category: Spodoptera frugiperda]]		[[Category: Spodoptera frugiperda]]
	[[Category: Buck, J.]]		[[Category: Buck, J.]]
Line 34:		Line 22:
	[[Category: Retinol]]		[[Category: Retinol]]
	[[Category: Sulfotransferase]]		[[Category: Sulfotransferase]]
-		+	[[Category: Transferase]]
-	~~''Page seeded by~~ [~~http~~:~~//oca.weizmann.ac.il/oca OCA~~ ] ~~on Wed Feb 18 08:25:57 2009''~~	+

OCA at 06:25, 18 February 2009

OCA — Wed, 18 Feb 2009 06:25:59 GMT

←Older revision		Revision as of 06:25, 18 February 2009
Line 20:		Line 20:

	==About this Structure==		==About this Structure==
-	1FMJ is a ~~[[Single protein]]~~ structure of ~~sequence~~ from [http://en.wikipedia.org/wiki/Spodoptera_frugiperda Spodoptera frugiperda]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1FMJ OCA].	+	1FMJ is a 2 chains structure of sequences from [http://en.wikipedia.org/wiki/Spodoptera_frugiperda Spodoptera frugiperda]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1FMJ OCA].

	==Reference==		==Reference==
-	~~A helical lid converts a sulfotransferase to a dehydratase., Pakhomova S, Kobayashi M, Buck J, Newcomer ME, Nat Struct Biol. 2001 May;8(5):447-51.~~ PMID:~~[http:~~//~~www.ncbi.nlm.nih.gov/pubmed/11323722 11323722]~~	+	<ref group="xtra">PMID:11323722</ref><references group="xtra"/>
-	~~[[Category: Single protein]]~~	+
	[[Category: Spodoptera frugiperda]]		[[Category: Spodoptera frugiperda]]
	[[Category: Buck, J.]]		[[Category: Buck, J.]]
Line 30:		Line 29:
	[[Category: Newcomer, M E.]]		[[Category: Newcomer, M E.]]
	[[Category: Pakhomova, S.]]		[[Category: Pakhomova, S.]]
-	[[Category: ~~Adenosine 3',~~5'-diphosphate]]	+	[[Category: 5'-diphosphate]]
		+	[[Category: Adenosine 3s']]
	[[Category: Dehydratase]]		[[Category: Dehydratase]]
	[[Category: Retinol]]		[[Category: Retinol]]
	[[Category: Sulfotransferase]]		[[Category: Sulfotransferase]]

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on ~~Tue Jul 1 03~~:29:~~18 2008~~''	+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Feb 18 08:25:57 2009''