1gd9 - Revision history

OCA at 23:30, 27 December 2023

OCA — Wed, 27 Dec 2023 23:30:08 GMT

←Older revision		Revision as of 23:30, 27 December 2023
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	<StructureSection load='1gd9' size='340' side='right'caption='[[1gd9]], [[Resolution\|resolution]] 1.80Å' scene=''>		<StructureSection load='1gd9' size='340' side='right'caption='[[1gd9]], [[Resolution\|resolution]] 1.80Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1gd9]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/~~'pyrococcus_shinkaii' 'pyrococcus shinkaii'~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1GD9 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1GD9 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1gd9]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Pyrococcus_horikoshii Pyrococcus horikoshii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1GD9 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1GD9 FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=PLP:PYRIDOXAL~~-~~5-PHOSPHATE'>PLP</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.8Å</td></tr>
-	<tr id='~~related~~'><td class="sblockLbl"><b>[[~~Related_structure~~\|~~Related~~:]]</b></td><td class="sblockDat"><~~div style~~='~~overflow~~: ~~auto; max~~-~~height: 3em;~~'>~~[[1dju\|1dju]], [[1gde\|1gde]]~~</~~div~~></td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=PLP:PYRIDOXAL-5-PHOSPHATE'>PLP</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1gd9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1gd9 OCA], [https://pdbe.org/1gd9 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1gd9 RCSB], [https://www.ebi.ac.uk/pdbsum/1gd9 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1gd9 ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1gd9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1gd9 OCA], [https://pdbe.org/1gd9 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1gd9 RCSB], [https://www.ebi.ac.uk/pdbsum/1gd9 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1gd9 ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/O59096_PYRHO O59096_PYRHO]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Pyrococcus shinkaii]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Harata, K]]	+	[[Category: Pyrococcus horikoshii]]
-	[[Category: Kuramitsu, S]]	+	[[Category: Harata K]]
-	[[Category: Matsui, I]]	+	[[Category: Kuramitsu S]]
-	[[Category: Ura, H]]	+	[[Category: Matsui I]]
-	~~[[Category: Aminotransferase]]~~	+	[[Category: Ura H]]
-	~~[[Category: Pyridoxal enzyme]]~~	+
-	~~[[Category: Temperature dependence of substrate recognition]]~~	+
-	~~[[Category: Transferase~~]]	+

OCA at 09:50, 21 July 2021

OCA — Wed, 21 Jul 2021 09:50:35 GMT

←Older revision		Revision as of 09:50, 21 July 2021
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	<StructureSection load='1gd9' size='340' side='right'caption='[[1gd9]], [[Resolution\|resolution]] 1.80Å' scene=''>		<StructureSection load='1gd9' size='340' side='right'caption='[[1gd9]], [[Resolution\|resolution]] 1.80Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1gd9]] is a 2 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/'pyrococcus_shinkaii' 'pyrococcus shinkaii']. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1GD9 OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1GD9 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1gd9]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/'pyrococcus_shinkaii' 'pyrococcus shinkaii']. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1GD9 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1GD9 FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=PLP:PYRIDOXAL-5-PHOSPHATE'>PLP</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=PLP:PYRIDOXAL-5-PHOSPHATE'>PLP</scene></td></tr>
-	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1dju\|1dju]], [[1gde\|1gde]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1dju\|1dju]], [[1gde\|1gde]]</div></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1gd9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1gd9 OCA], [~~http~~://pdbe.org/1gd9 PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=1gd9 RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/1gd9 PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=1gd9 ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1gd9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1gd9 OCA], [https://pdbe.org/1gd9 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1gd9 RCSB], [https://www.ebi.ac.uk/pdbsum/1gd9 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1gd9 ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==

OCA at 06:07, 16 October 2019

OCA — Wed, 16 Oct 2019 06:07:42 GMT

←Older revision		Revision as of 06:07, 16 October 2019
Line 1:		Line 1:

	==CRYSTALL STRUCTURE OF PYROCOCCUS PROTEIN-A1==		==CRYSTALL STRUCTURE OF PYROCOCCUS PROTEIN-A1==
-	<StructureSection load='1gd9' size='340' side='right' caption='[[1gd9]], [[Resolution\|resolution]] 1.80Å' scene=''>	+	<StructureSection load='1gd9' size='340' side='right'caption='[[1gd9]], [[Resolution\|resolution]] 1.80Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1gd9]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/'pyrococcus_shinkaii' 'pyrococcus shinkaii']. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1GD9 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1GD9 FirstGlance]. <br>		<table><tr><td colspan='2'>[[1gd9]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/'pyrococcus_shinkaii' 'pyrococcus shinkaii']. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1GD9 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1GD9 FirstGlance]. <br>
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	</div>		</div>
	<div class="pdbe-citations 1gd9" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 1gd9" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[Aspartate aminotransferase 3D structures\|Aspartate aminotransferase 3D structures]]
	== References ==		== References ==
	<references/>		<references/>
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	</StructureSection>		</StructureSection>
	[[Category: Pyrococcus shinkaii]]		[[Category: Pyrococcus shinkaii]]
		+	[[Category: Large Structures]]
	[[Category: Harata, K]]		[[Category: Harata, K]]
	[[Category: Kuramitsu, S]]		[[Category: Kuramitsu, S]]

OCA at 06:45, 3 January 2018

OCA — Wed, 03 Jan 2018 06:45:49 GMT

←Older revision		Revision as of 06:45, 3 January 2018
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		+
	==CRYSTALL STRUCTURE OF PYROCOCCUS PROTEIN-A1==		==CRYSTALL STRUCTURE OF PYROCOCCUS PROTEIN-A1==
	<StructureSection load='1gd9' size='340' side='right' caption='[[1gd9]], [[Resolution\|resolution]] 1.80Å' scene=''>		<StructureSection load='1gd9' size='340' side='right' caption='[[1gd9]], [[Resolution\|resolution]] 1.80Å' scene=''>
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	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=PLP:PYRIDOXAL-5-PHOSPHATE'>PLP</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=PLP:PYRIDOXAL-5-PHOSPHATE'>PLP</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1dju\|1dju]], [[1gde\|1gde]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1dju\|1dju]], [[1gde\|1gde]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1gd9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1gd9 OCA], [http://pdbe.org/1gd9 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1gd9 RCSB], [http://www.ebi.ac.uk/pdbsum/1gd9 PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1gd9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1gd9 OCA], [http://pdbe.org/1gd9 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1gd9 RCSB], [http://www.ebi.ac.uk/pdbsum/1gd9 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1gd9 ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 11:		Line 12:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gd/1gd9_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gd/1gd9_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
Line 26:		Line 27:
	</div>		</div>
	<div class="pdbe-citations 1gd9" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 1gd9" style="background-color:#fffaf0;"></div>
-
-	==See Also==
-	*[[Aspartate Aminotransferase\|Aspartate Aminotransferase]]
	== References ==		== References ==
	<references/>		<references/>

OCA at 02:02, 10 February 2016

OCA — Wed, 10 Feb 2016 02:02:45 GMT

←Older revision		Revision as of 02:02, 10 February 2016
Line 15:		Line 15:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1gd9 ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 04:17, 11 September 2015

OCA — Fri, 11 Sep 2015 04:17:04 GMT

←Older revision		Revision as of 04:17, 11 September 2015
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	<StructureSection load='1gd9' size='340' side='right' caption='[[1gd9]], [[Resolution\|resolution]] 1.80Å' scene=''>		<StructureSection load='1gd9' size='340' side='right' caption='[[1gd9]], [[Resolution\|resolution]] 1.80Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1gd9]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Pyrococcus_horikoshii Pyrococcus horikoshii~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1GD9 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1GD9 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1gd9]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/'pyrococcus_shinkaii' 'pyrococcus shinkaii']. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1GD9 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1GD9 FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=PLP:PYRIDOXAL-5-PHOSPHATE'>PLP</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=PLP:PYRIDOXAL-5-PHOSPHATE'>PLP</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1dju\|1dju]], [[1gde\|1gde]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1dju\|1dju]], [[1gde\|1gde]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1gd9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1gd9 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1gd9 RCSB], [http://www.ebi.ac.uk/pdbsum/1gd9 PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1gd9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1gd9 OCA], [http://pdbe.org/1gd9 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1gd9 RCSB], [http://www.ebi.ac.uk/pdbsum/1gd9 PDBsum]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
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	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 1gd9" style="background-color:#fffaf0;"></div>

	==See Also==		==See Also==
Line 32:		Line 33:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Pyrococcus ~~horikoshii~~]]	+	[[Category: Pyrococcus shinkaii]]
	[[Category: Harata, K]]		[[Category: Harata, K]]
	[[Category: Kuramitsu, S]]		[[Category: Kuramitsu, S]]

OCA at 00:38, 23 December 2014

OCA — Tue, 23 Dec 2014 00:38:46 GMT

←Older revision		Revision as of 00:38, 23 December 2014
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1gd9]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Pyrococcus_horikoshii Pyrococcus horikoshii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1GD9 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1GD9 FirstGlance]. <br>		<table><tr><td colspan='2'>[[1gd9]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Pyrococcus_horikoshii Pyrococcus horikoshii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1GD9 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1GD9 FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=PLP:PYRIDOXAL-5-PHOSPHATE'>PLP</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=PLP:PYRIDOXAL-5-PHOSPHATE'>PLP</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1dju\|1dju]], [[1gde\|1gde]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1dju\|1dju]], [[1gde\|1gde]]</td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1gd9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1gd9 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1gd9 RCSB], [http://www.ebi.ac.uk/pdbsum/1gd9 PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1gd9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1gd9 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1gd9 RCSB], [http://www.ebi.ac.uk/pdbsum/1gd9 PDBsum]</span></td></tr>
-	<table>	+	</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
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	</StructureSection>		</StructureSection>
	[[Category: Pyrococcus horikoshii]]		[[Category: Pyrococcus horikoshii]]
-	[[Category: Harata, K.]]	+	[[Category: Harata, K]]
-	[[Category: Kuramitsu, S.]]	+	[[Category: Kuramitsu, S]]
-	[[Category: Matsui, I.]]	+	[[Category: Matsui, I]]
-	[[Category: Ura, H.]]	+	[[Category: Ura, H]]
	[[Category: Aminotransferase]]		[[Category: Aminotransferase]]
	[[Category: Pyridoxal enzyme]]		[[Category: Pyridoxal enzyme]]
	[[Category: Temperature dependence of substrate recognition]]		[[Category: Temperature dependence of substrate recognition]]
	[[Category: Transferase]]		[[Category: Transferase]]

OCA at 14:30, 28 September 2014

OCA — Sun, 28 Sep 2014 14:30:12 GMT

←Older revision		Revision as of 14:30, 28 September 2014
Line 1:		Line 1:
-	[[~~Image:~~1gd9.~~png~~\|~~left~~\|200px]]	+	==CRYSTALL STRUCTURE OF PYROCOCCUS PROTEIN-A1==
		+	<StructureSection load='1gd9' size='340' side='right' caption='[[1gd9]], [[Resolution\|resolution]] 1.80Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[1gd9]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Pyrococcus_horikoshii Pyrococcus horikoshii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1GD9 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1GD9 FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=PLP:PYRIDOXAL-5-PHOSPHATE'>PLP</scene><br>
		+	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1dju\|1dju]], [[1gde\|1gde]]</td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1gd9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1gd9 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1gd9 RCSB], [http://www.ebi.ac.uk/pdbsum/1gd9 PDBsum]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gd/1gd9_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	We determined the crystal structure of the liganded form of alpha-aminotransferase from a hyperthermophile, Pyrococcus horikoshii. This hyperthermophilic enzyme did not show domain movement upon binding of an acidic substrate, glutamate, except for a small movement of the alpha-helix from Glu16 to Ala25. The omega-carboxyl group of the acidic substrate was recognized by Tyr70* without its side-chain movement, but not by positively charged Arg or Lys. Compared with the homologous enzymes from Thermus thermophilus HB8 and Escherichia coli, it was suggested that the more thermophilic the enzyme is, the smaller the domain movement is. This rule seems to be applicable to many other enzymes already reported.

-	~~{{STRUCTURE_1gd9\| PDB=1gd9 \| SCENE= }}~~	+	Temperature dependence of the enzyme-substrate recognition mechanism.,Ura H, Harata K, Matsui I, Kuramitsu S J Biochem. 2001 Jan;129(1):173-8. PMID:11134972<ref>PMID:11134972</ref>

-	~~===CRYSTALL STRUCTURE OF PYROCOCCUS PROTEIN-A1===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_11134972}}~~	+
-		+
-	~~==About this Structure==~~	+
-	~~[[1gd9]] is~~ a ~~2 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org/wiki/Pyrococcus_horikoshii Pyrococcus horikoshii]~~. ~~Full crystallographic information is available from [http:~~/~~/oca.weizmann.ac.il/oca-bin/ocashort?id=1GD9 OCA].~~	+

	==See Also==		==See Also==
	*[[Aspartate Aminotransferase\|Aspartate Aminotransferase]]		*[[Aspartate Aminotransferase\|Aspartate Aminotransferase]]
-		+	== References ==
-	==~~Reference~~==	+	<references/>
-	<~~ref group="xtra">PMID:011134972<~~/~~ref~~><~~references group="xtra"~~/>	+	__TOC__
		+	</StructureSection>
	[[Category: Pyrococcus horikoshii]]		[[Category: Pyrococcus horikoshii]]
	[[Category: Harata, K.]]		[[Category: Harata, K.]]

OCA at 15:56, 20 October 2012

OCA — Sat, 20 Oct 2012 15:56:04 GMT

←Older revision		Revision as of 15:56, 20 October 2012
Line 8:		Line 8:

	==About this Structure==		==About this Structure==
-	[[1gd9]] is a 2 chain structure ~~of [[Aspartate Aminotransferase]]~~ with sequence from [http://en.wikipedia.org/wiki/Pyrococcus_horikoshii Pyrococcus horikoshii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1GD9 OCA].	+	[[1gd9]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Pyrococcus_horikoshii Pyrococcus horikoshii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1GD9 OCA].

	==See Also==		==See Also==

OCA: Protected "1gd9" [edit=sysop:move=sysop]

OCA — Thu, 26 Jul 2012 19:57:55 GMT

Protected "1gd9" [edit=sysop:move=sysop]

←Older revision

Revision as of 19:57, 26 July 2012