1gq8 - Revision history

OCA at 12:03, 13 December 2023

OCA — Wed, 13 Dec 2023 12:03:37 GMT

←Older revision		Revision as of 12:03, 13 December 2023
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	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1gq8]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Daucus_carota Daucus carota]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1GQ8 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1GQ8 FirstGlance]. <br>		<table><tr><td colspan='2'>[[1gq8]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Daucus_carota Daucus carota]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1GQ8 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1GQ8 FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=CAC:CACODYLATE+ION'>CAC</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.75Å</td></tr>
-	<tr id='~~NonStdRes~~'><td class="sblockLbl"><b>[[~~Non-Standard_Residue~~\|~~NonStd Res~~:]]</b></td><td class="sblockDat"><scene name='pdbligand=~~PCA~~:~~PYROGLUTAMIC~~+~~ACID~~'>~~PCA~~</scene><~~/td></tr>~~	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CAC:CACODYLATE+ION'>CAC</scene>, <scene name='pdbligand=PCA:PYROGLUTAMIC+ACID'>PCA</scene></td></tr>
-	~~<tr id~~='~~activity'><td class~~=~~"sblockLbl"><b>Activity~~:~~</b></td><td class="sblockDat"><span class='plainlinks~~'>~~[https://en.wikipedia.org/wiki/Hydrolase Hydrolase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.1.11 3.1.1.11]~~ </~~span~~></td></tr>	+
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1gq8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1gq8 OCA], [https://pdbe.org/1gq8 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1gq8 RCSB], [https://www.ebi.ac.uk/pdbsum/1gq8 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1gq8 ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1gq8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1gq8 OCA], [https://pdbe.org/1gq8 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1gq8 RCSB], [https://www.ebi.ac.uk/pdbsum/1gq8 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1gq8 ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[https://www.uniprot.org/uniprot/PME_DAUCA PME_DAUCA]] Catalyzes the deesterification of methyl-esterified D-galactosiduronic acid units in pectic compounds. It participates in modulating cell wall during fruit ripening, cell wall extension during pollen germination, and in defense mechanisms against pathogens.	+	[https://www.uniprot.org/uniprot/PME_DAUCA PME_DAUCA] Catalyzes the deesterification of methyl-esterified D-galactosiduronic acid units in pectic compounds. It participates in modulating cell wall during fruit ripening, cell wall extension during pollen germination, and in defense mechanisms against pathogens.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
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	</StructureSection>		</StructureSection>
	[[Category: Daucus carota]]		[[Category: Daucus carota]]
-	[[Category: Hydrolase]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Eklund, H]]	+	[[Category: Eklund H]]
-	[[Category: El-Ahmad, M]]	+	[[Category: El-Ahmad M]]
-	[[Category: Friemann, R]]	+	[[Category: Friemann R]]
-	[[Category: Johansson, K]]	+	[[Category: Johansson K]]
-	[[Category: Jornvall, H]]	+	[[Category: Jornvall H]]
-	[[Category: Markovic, O]]	+	[[Category: Markovic O]]
-	~~[[Category: Carboxylic ester hydrolase~~]]	+

OCA at 17:11, 15 December 2021

OCA — Wed, 15 Dec 2021 17:11:41 GMT

←Older revision		Revision as of 17:11, 15 December 2021
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	<StructureSection load='1gq8' size='340' side='right'caption='[[1gq8]], [[Resolution\|resolution]] 1.75Å' scene=''>		<StructureSection load='1gq8' size='340' side='right'caption='[[1gq8]], [[Resolution\|resolution]] 1.75Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1gq8]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Daucus_carota Daucus carota]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1GQ8 OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1GQ8 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1gq8]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Daucus_carota Daucus carota]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1GQ8 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1GQ8 FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CAC:CACODYLATE+ION'>CAC</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CAC:CACODYLATE+ION'>CAC</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=PCA:PYROGLUTAMIC+ACID'>PCA</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=PCA:PYROGLUTAMIC+ACID'>PCA</scene></td></tr>
-	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://en.wikipedia.org/wiki/Hydrolase Hydrolase], with EC number [~~http~~://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.1.11 3.1.1.11] </span></td></tr>	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Hydrolase Hydrolase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.1.11 3.1.1.11] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1gq8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1gq8 OCA], [~~http~~://pdbe.org/1gq8 PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=1gq8 RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/1gq8 PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=1gq8 ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1gq8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1gq8 OCA], [https://pdbe.org/1gq8 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1gq8 RCSB], [https://www.ebi.ac.uk/pdbsum/1gq8 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1gq8 ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[~~http~~://www.uniprot.org/uniprot/PME_DAUCA PME_DAUCA]] Catalyzes the deesterification of methyl-esterified D-galactosiduronic acid units in pectic compounds. It participates in modulating cell wall during fruit ripening, cell wall extension during pollen germination, and in defense mechanisms against pathogens.	+	[[https://www.uniprot.org/uniprot/PME_DAUCA PME_DAUCA]] Catalyzes the deesterification of methyl-esterified D-galactosiduronic acid units in pectic compounds. It participates in modulating cell wall during fruit ripening, cell wall extension during pollen germination, and in defense mechanisms against pathogens.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]

OCA at 07:36, 11 March 2020

OCA — Wed, 11 Mar 2020 07:36:30 GMT

←Older revision		Revision as of 07:36, 11 March 2020
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	==See Also==		==See Also==
-	*[[Methylesterase\|Methylesterase]]	+	*[[Methylesterase 3D structures\|Methylesterase 3D structures]]
	== References ==		== References ==
	<references/>		<references/>

OCA at 08:56, 23 October 2019

OCA — Wed, 23 Oct 2019 08:56:08 GMT

←Older revision		Revision as of 08:56, 23 October 2019
Line 1:		Line 1:

	==Pectin methylesterase from Carrot==		==Pectin methylesterase from Carrot==
-	<StructureSection load='1gq8' size='340' side='right' caption='[[1gq8]], [[Resolution\|resolution]] 1.75Å' scene=''>	+	<StructureSection load='1gq8' size='340' side='right'caption='[[1gq8]], [[Resolution\|resolution]] 1.75Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1gq8]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Daucus_carota Daucus carota]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1GQ8 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1GQ8 FirstGlance]. <br>		<table><tr><td colspan='2'>[[1gq8]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Daucus_carota Daucus carota]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1GQ8 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1GQ8 FirstGlance]. <br>
Line 30:		Line 30:
	</div>		</div>
	<div class="pdbe-citations 1gq8" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 1gq8" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[Methylesterase\|Methylesterase]]
	== References ==		== References ==
	<references/>		<references/>
Line 36:		Line 39:
	[[Category: Daucus carota]]		[[Category: Daucus carota]]
	[[Category: Hydrolase]]		[[Category: Hydrolase]]
		+	[[Category: Large Structures]]
	[[Category: Eklund, H]]		[[Category: Eklund, H]]
	[[Category: El-Ahmad, M]]		[[Category: El-Ahmad, M]]

OCA at 06:37, 3 January 2018

OCA — Wed, 03 Jan 2018 06:37:32 GMT

←Older revision		Revision as of 06:37, 3 January 2018
Line 1:		Line 1:
-	==~~PECTIN METHYLESTERASE FROM CARROT~~==	+
		+	==Pectin methylesterase from Carrot==
	<StructureSection load='1gq8' size='340' side='right' caption='[[1gq8]], [[Resolution\|resolution]] 1.75Å' scene=''>		<StructureSection load='1gq8' size='340' side='right' caption='[[1gq8]], [[Resolution\|resolution]] 1.75Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
Line 6:		Line 7:
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=PCA:PYROGLUTAMIC+ACID'>PCA</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=PCA:PYROGLUTAMIC+ACID'>PCA</scene></td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Hydrolase Hydrolase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.1.11 3.1.1.11] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Hydrolase Hydrolase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.1.11 3.1.1.11] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1gq8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1gq8 OCA], [http://pdbe.org/1gq8 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1gq8 RCSB], [http://www.ebi.ac.uk/pdbsum/1gq8 PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1gq8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1gq8 OCA], [http://pdbe.org/1gq8 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1gq8 RCSB], [http://www.ebi.ac.uk/pdbsum/1gq8 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1gq8 ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
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	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gq/1gq8_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gq/1gq8_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
Line 29:		Line 30:
	</div>		</div>
	<div class="pdbe-citations 1gq8" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 1gq8" style="background-color:#fffaf0;"></div>
-
-	==See Also==
-	*[[Methylesterase\|Methylesterase]]
	== References ==		== References ==
	<references/>		<references/>

OCA at 03:19, 10 February 2016

OCA — Wed, 10 Feb 2016 03:19:37 GMT

←Older revision		Revision as of 03:19, 10 February 2016
Line 18:		Line 18:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1gq8 ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 04:51, 11 September 2015

OCA — Fri, 11 Sep 2015 04:51:44 GMT

←Older revision		Revision as of 04:51, 11 September 2015
Line 5:		Line 5:
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CAC:CACODYLATE+ION'>CAC</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CAC:CACODYLATE+ION'>CAC</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=PCA:PYROGLUTAMIC+ACID'>PCA</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=PCA:PYROGLUTAMIC+ACID'>PCA</scene></td></tr>
-	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/~~Pectinesterase Pectinesterase~~], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.1.11 3.1.1.11] </span></td></tr>	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Hydrolase Hydrolase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.1.11 3.1.1.11] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1gq8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1gq8 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1gq8 RCSB], [http://www.ebi.ac.uk/pdbsum/1gq8 PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1gq8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1gq8 OCA], [http://pdbe.org/1gq8 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1gq8 RCSB], [http://www.ebi.ac.uk/pdbsum/1gq8 PDBsum]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 28:		Line 28:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 1gq8" style="background-color:#fffaf0;"></div>

	==See Also==		==See Also==
Line 36:		Line 37:
	</StructureSection>		</StructureSection>
	[[Category: Daucus carota]]		[[Category: Daucus carota]]
-	[[Category: ~~Pectinesterase~~]]	+	[[Category: Hydrolase]]
	[[Category: Eklund, H]]		[[Category: Eklund, H]]
	[[Category: El-Ahmad, M]]		[[Category: El-Ahmad, M]]
Line 44:		Line 45:
	[[Category: Markovic, O]]		[[Category: Markovic, O]]
	[[Category: Carboxylic ester hydrolase]]		[[Category: Carboxylic ester hydrolase]]
-	[[Category: Hydrolase]]

OCA at 11:26, 25 December 2014

OCA — Thu, 25 Dec 2014 11:26:12 GMT

←Older revision		Revision as of 11:26, 25 December 2014
Line 8:		Line 8:
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1gq8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1gq8 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1gq8 RCSB], [http://www.ebi.ac.uk/pdbsum/1gq8 PDBsum]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1gq8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1gq8 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1gq8 RCSB], [http://www.ebi.ac.uk/pdbsum/1gq8 PDBsum]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/PME_DAUCA PME_DAUCA]] Catalyzes the deesterification of methyl-esterified D-galactosiduronic acid units in pectic compounds. It participates in modulating cell wall during fruit ripening, cell wall extension during pollen germination, and in defense mechanisms against pathogens.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]

OCA at 18:46, 22 December 2014

OCA — Mon, 22 Dec 2014 18:46:10 GMT

←Older revision		Revision as of 18:46, 22 December 2014
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1gq8]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Daucus_carota Daucus carota]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1GQ8 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1GQ8 FirstGlance]. <br>		<table><tr><td colspan='2'>[[1gq8]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Daucus_carota Daucus carota]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1GQ8 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1GQ8 FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CAC:CACODYLATE+ION'>CAC</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CAC:CACODYLATE+ION'>CAC</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=PCA:PYROGLUTAMIC+ACID'>PCA</scene></td></tr>	+	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=PCA:PYROGLUTAMIC+ACID'>PCA</scene></td></tr>
-	<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Pectinesterase Pectinesterase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.1.11 3.1.1.11] </span></td></tr>	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Pectinesterase Pectinesterase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.1.11 3.1.1.11] </span></td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1gq8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1gq8 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1gq8 RCSB], [http://www.ebi.ac.uk/pdbsum/1gq8 PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1gq8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1gq8 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1gq8 RCSB], [http://www.ebi.ac.uk/pdbsum/1gq8 PDBsum]</span></td></tr>
-	<table>	+	</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 35:		Line 35:
	[[Category: Daucus carota]]		[[Category: Daucus carota]]
	[[Category: Pectinesterase]]		[[Category: Pectinesterase]]
-	[[Category: Eklund, H.]]	+	[[Category: Eklund, H]]
-	[[Category: El-Ahmad, M.]]	+	[[Category: El-Ahmad, M]]
-	[[Category: Friemann, R.]]	+	[[Category: Friemann, R]]
-	[[Category: Johansson, K.]]	+	[[Category: Johansson, K]]
-	[[Category: Jornvall, H.]]	+	[[Category: Jornvall, H]]
-	[[Category: Markovic, O.]]	+	[[Category: Markovic, O]]
	[[Category: Carboxylic ester hydrolase]]		[[Category: Carboxylic ester hydrolase]]
	[[Category: Hydrolase]]		[[Category: Hydrolase]]

OCA at 08:47, 28 September 2014

OCA — Sun, 28 Sep 2014 08:47:37 GMT

←Older revision		Revision as of 08:47, 28 September 2014
Line 1:		Line 1:
-	[[~~Image:~~1gq8.~~png~~\|~~left~~\|200px]]	+	==PECTIN METHYLESTERASE FROM CARROT==
		+	<StructureSection load='1gq8' size='340' side='right' caption='[[1gq8]], [[Resolution\|resolution]] 1.75Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[1gq8]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Daucus_carota Daucus carota]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1GQ8 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1GQ8 FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CAC:CACODYLATE+ION'>CAC</scene><br>
		+	<tr><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=PCA:PYROGLUTAMIC+ACID'>PCA</scene></td></tr>
		+	<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Pectinesterase Pectinesterase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.1.11 3.1.1.11] </span></td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1gq8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1gq8 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1gq8 RCSB], [http://www.ebi.ac.uk/pdbsum/1gq8 PDBsum]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gq/1gq8_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Pectin is a principal component in the primary cell wall of plants. During cell development, pectin is modified by pectin methylesterases to give different properties to the cell wall. This report describes the first crystal structure of a plant pectin methylesterase. The beta-helical structure embodies a central cleft, lined by several aromatic residues, that has been deduced to be suitable for pectin binding. The active site is found at the center of this cleft where Asp157 is suggested to act as the nucleophile, Asp136 as an acid/base and Gln113/Gln135 to form an anion hole to stabilize the transition state.

-	~~{{STRUCTURE_1gq8\| PDB=1gq8 \| SCENE= }}~~	+	Crystal structure of plant pectin methylesterase.,Johansson K, El-Ahmad M, Friemann R, Jornvall H, Markovic O, Eklund H FEBS Lett. 2002 Mar 13;514(2-3):243-9. PMID:11943159<ref>PMID:11943159</ref>

-	~~===PECTIN METHYLESTERASE FROM CARROT===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_11943159}}~~	+
-		+
-	~~==About this Structure==~~	+
-	~~[[1gq8]] is~~ a ~~1 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org/wiki/Daucus_carota Daucus carota]~~. ~~Full crystallographic information is available from [http:~~/~~/oca.weizmann.ac.il/oca-bin/ocashort?id=1GQ8 OCA].~~	+

	==See Also==		==See Also==
	*[[Methylesterase\|Methylesterase]]		*[[Methylesterase\|Methylesterase]]
-		+	== References ==
-	==~~Reference~~==	+	<references/>
-	<~~ref group="xtra">PMID:011943159<~~/~~ref~~><~~references group="xtra"~~/>	+	__TOC__
		+	</StructureSection>
	[[Category: Daucus carota]]		[[Category: Daucus carota]]
	[[Category: Pectinesterase]]		[[Category: Pectinesterase]]