1gyo - Revision history

OCA at 06:55, 29 March 2023

OCA — Wed, 29 Mar 2023 06:55:43 GMT

←Older revision		Revision as of 06:55, 29 March 2023
Line 3:		Line 3:
	<StructureSection load='1gyo' size='340' side='right'caption='[[1gyo]], [[Resolution\|resolution]] 1.20Å' scene=''>		<StructureSection load='1gyo' size='340' side='right'caption='[[1gyo]], [[Resolution\|resolution]] 1.20Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1gyo]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Desulfovibrio_gigas Desulfovibrio~~ gigas]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1GYO OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1GYO FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1gyo]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Megalodesulfovibrio_gigas Megalodesulfovibrio gigas]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1GYO OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1GYO FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=HEC:HEME+C'>HEC</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=HEC:HEME+C'>HEC</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1gyo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1gyo OCA], [https://pdbe.org/1gyo PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1gyo RCSB], [https://www.ebi.ac.uk/pdbsum/1gyo PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1gyo ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1gyo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1gyo OCA], [https://pdbe.org/1gyo PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1gyo RCSB], [https://www.ebi.ac.uk/pdbsum/1gyo PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1gyo ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/Q9R638_MEGGA Q9R638_MEGGA]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 33:		Line 35:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Desulfovibrio gigas]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Aragao, D]]	+	[[Category: Megalodesulfovibrio gigas]]
-	[[Category: Carrondo~~, M A~~]]	+	[[Category: Aragao D]]
-	[[Category: Frazao, C]]	+	[[Category: Carrondo MA]]
-	[[Category: Legall, J]]	+	[[Category: Frazao C]]
-	[[Category: Sheldrick~~, G M~~]]	+	[[Category: Legall J]]
-	[[Category: Sieker, L]]	+	[[Category: Sheldrick GM]]
-	~~[[Category: Ab initio]]~~	+	[[Category: Sieker L]]
-	~~[[Category: Cytochrome c3]]~~	+
-	~~[[Category: Di-tetraheme]]~~	+
-	~~[[Category: Electron transfer]]~~	+
-	~~[[Category: Electron transport~~]]	+

OCA at 05:48, 28 April 2021

OCA — Wed, 28 Apr 2021 05:48:04 GMT

←Older revision		Revision as of 05:48, 28 April 2021
Line 3:		Line 3:
	<StructureSection load='1gyo' size='340' side='right'caption='[[1gyo]], [[Resolution\|resolution]] 1.20Å' scene=''>		<StructureSection load='1gyo' size='340' side='right'caption='[[1gyo]], [[Resolution\|resolution]] 1.20Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1gyo]] is a 2 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Desulfovibrio_gigas Desulfovibrio gigas]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1GYO OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1GYO FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1gyo]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Desulfovibrio_gigas Desulfovibrio gigas]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1GYO OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1GYO FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=HEC:HEME+C'>HEC</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=HEC:HEME+C'>HEC</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1gyo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1gyo OCA], [~~http~~://pdbe.org/1gyo PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=1gyo RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/1gyo PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=1gyo ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1gyo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1gyo OCA], [https://pdbe.org/1gyo PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1gyo RCSB], [https://www.ebi.ac.uk/pdbsum/1gyo PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1gyo ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==

OCA at 06:41, 24 July 2019

OCA — Wed, 24 Jul 2019 06:41:53 GMT

←Older revision		Revision as of 06:41, 24 July 2019
Line 1:		Line 1:

	==Crystal structure of the di-tetraheme cytochrome c3 from Desulfovibrio gigas at 1.2 Angstrom resolution==		==Crystal structure of the di-tetraheme cytochrome c3 from Desulfovibrio gigas at 1.2 Angstrom resolution==
-	<StructureSection load='1gyo' size='340' side='right' caption='[[1gyo]], [[Resolution\|resolution]] 1.20Å' scene=''>	+	<StructureSection load='1gyo' size='340' side='right'caption='[[1gyo]], [[Resolution\|resolution]] 1.20Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1gyo]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Desulfovibrio_gigas Desulfovibrio gigas]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1GYO OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1GYO FirstGlance]. <br>		<table><tr><td colspan='2'>[[1gyo]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Desulfovibrio_gigas Desulfovibrio gigas]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1GYO OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1GYO FirstGlance]. <br>
Line 28:		Line 28:

	==See Also==		==See Also==
-	*[[Cytochrome c\|Cytochrome c]]	+	*[[Cytochrome C 3D structures\|Cytochrome C 3D structures]]
	== References ==		== References ==
	<references/>		<references/>
Line 34:		Line 34:
	</StructureSection>		</StructureSection>
	[[Category: Desulfovibrio gigas]]		[[Category: Desulfovibrio gigas]]
		+	[[Category: Large Structures]]
	[[Category: Aragao, D]]		[[Category: Aragao, D]]
	[[Category: Carrondo, M A]]		[[Category: Carrondo, M A]]

OCA at 06:47, 2 January 2019

OCA — Wed, 02 Jan 2019 06:47:02 GMT

←Older revision		Revision as of 06:47, 2 January 2019
Line 11:		Line 11:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gy/1gyo_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gy/1gyo_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>

OCA at 07:07, 29 March 2017

OCA — Wed, 29 Mar 2017 07:07:06 GMT

←Older revision		Revision as of 07:07, 29 March 2017
Line 1:		Line 1:
-	==~~CRYSTAL STRUCTURE OF THE DI~~-~~TETRAHEME CYTOCHROME C3 FROM DESULFOVIBRIO GIGAS AT~~ 1.2 ~~ANG RESOLUTION~~==	+
		+	==Crystal structure of the di-tetraheme cytochrome c3 from Desulfovibrio gigas at 1.2 Angstrom resolution==
	<StructureSection load='1gyo' size='340' side='right' caption='[[1gyo]], [[Resolution\|resolution]] 1.20Å' scene=''>		<StructureSection load='1gyo' size='340' side='right' caption='[[1gyo]], [[Resolution\|resolution]] 1.20Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1gyo]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Desulfovibrio_gigas Desulfovibrio gigas]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1GYO OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1GYO FirstGlance]. <br>		<table><tr><td colspan='2'>[[1gyo]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Desulfovibrio_gigas Desulfovibrio gigas]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1GYO OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1GYO FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=HEC:HEME+C'>HEC</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=HEC:HEME+C'>HEC</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1gyo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1gyo OCA], [http://pdbe.org/1gyo PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1gyo RCSB], [http://www.ebi.ac.uk/pdbsum/1gyo PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1gyo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1gyo OCA], [http://pdbe.org/1gyo PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1gyo RCSB], [http://www.ebi.ac.uk/pdbsum/1gyo PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1gyo ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==

OCA at 18:27, 7 February 2016

OCA — Sun, 07 Feb 2016 18:27:17 GMT

←Older revision		Revision as of 18:27, 7 February 2016
Line 14:		Line 14:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1gyo ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 04:02, 10 September 2015

OCA — Thu, 10 Sep 2015 04:02:17 GMT

←Older revision		Revision as of 04:02, 10 September 2015
Line 4:		Line 4:
	<table><tr><td colspan='2'>[[1gyo]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Desulfovibrio_gigas Desulfovibrio gigas]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1GYO OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1GYO FirstGlance]. <br>		<table><tr><td colspan='2'>[[1gyo]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Desulfovibrio_gigas Desulfovibrio gigas]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1GYO OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1GYO FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=HEC:HEME+C'>HEC</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=HEC:HEME+C'>HEC</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1gyo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1gyo OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1gyo RCSB], [http://www.ebi.ac.uk/pdbsum/1gyo PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1gyo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1gyo OCA], [http://pdbe.org/1gyo PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1gyo RCSB], [http://www.ebi.ac.uk/pdbsum/1gyo PDBsum]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 24:		Line 24:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 1gyo" style="background-color:#fffaf0;"></div>

	==See Also==		==See Also==

OCA at 18:28, 22 December 2014

OCA — Mon, 22 Dec 2014 18:28:12 GMT

←Older revision		Revision as of 18:28, 22 December 2014
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1gyo]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Desulfovibrio_gigas Desulfovibrio gigas]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1GYO OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1GYO FirstGlance]. <br>		<table><tr><td colspan='2'>[[1gyo]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Desulfovibrio_gigas Desulfovibrio gigas]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1GYO OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1GYO FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=HEC:HEME+C'>HEC</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=HEC:HEME+C'>HEC</scene></td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1gyo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1gyo OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1gyo RCSB], [http://www.ebi.ac.uk/pdbsum/1gyo PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1gyo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1gyo OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1gyo RCSB], [http://www.ebi.ac.uk/pdbsum/1gyo PDBsum]</span></td></tr>
-	<table>	+	</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 32:		Line 32:
	</StructureSection>		</StructureSection>
	[[Category: Desulfovibrio gigas]]		[[Category: Desulfovibrio gigas]]
-	[[Category: Aragao, D.]]	+	[[Category: Aragao, D]]
-	[[Category: Carrondo, M A.]]	+	[[Category: Carrondo, M A]]
-	[[Category: Frazao, C.]]	+	[[Category: Frazao, C]]
-	[[Category: Legall, J.]]	+	[[Category: Legall, J]]
-	[[Category: Sheldrick, G M.]]	+	[[Category: Sheldrick, G M]]
-	[[Category: Sieker, L.]]	+	[[Category: Sieker, L]]
	[[Category: Ab initio]]		[[Category: Ab initio]]
	[[Category: Cytochrome c3]]		[[Category: Cytochrome c3]]

OCA at 08:31, 28 September 2014

OCA — Sun, 28 Sep 2014 08:31:46 GMT

←Older revision		Revision as of 08:31, 28 September 2014
Line 1:		Line 1:
-	[[~~Image~~:1gyo.~~png\|left~~\|200px]]	+	==CRYSTAL STRUCTURE OF THE DI-TETRAHEME CYTOCHROME C3 FROM DESULFOVIBRIO GIGAS AT 1.2 ANG RESOLUTION==
		+	<StructureSection load='1gyo' size='340' side='right' caption='[[1gyo]], [[Resolution\|resolution]] 1.20Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[1gyo]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Desulfovibrio_gigas Desulfovibrio gigas]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1GYO OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1GYO FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=HEC:HEME+C'>HEC</scene><br>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1gyo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1gyo OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1gyo RCSB], [http://www.ebi.ac.uk/pdbsum/1gyo PDBsum]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gy/1gyo_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	The structure of dimeric cytochrome c(3) from the sulfate-reducing bacterium Desulfovibrio gigas, diDg, obtained by ab initio methods was further refined to 1.2 A resolution, giving final reliability factors of R(free) = 14.8% and R = 12.4%. This cytochrome is a dimer of tetraheme cytochrome c(3) molecules covalently linked by two solvent-accessible disulfide bridges, a characteristic unique to members of the cytochrome c(3) superfamily. Anisotropic analysis using the semi-rigid TLS method shows different behaviour for analogous loops in each monomer arising from their different packing environments. A detailed sequence and structural comparison with all other known cytochrome c(3) domains in single- and multi-domain cytochromes c(3) shows the presence of structurally conserved regions in this family, despite the high variability of the amino-acid sequence. An internal water molecule is conserved in a common structural arrangement in all c(3) tetraheme domains, indicating a probable electron-transfer pathway between hemes I and II. Unique features of diDg are an internal methionine residue close to heme I and to one of the axial ligands of heme III, where all other structures of the cytochrome c(3) superfamily have a phenylalanine, and a rather unusual CXXXCH heme-binding motif only found so far in this cytochrome.

-	~~{{STRUCTURE_1gyo\| PDB=1gyo \| SCENE= }}~~	+	Structure of dimeric cytochrome c3 from Desulfovibrio gigas at 1.2 A resolution.,Aragao D, Frazao C, Sieker L, Sheldrick GM, LeGall J, Carrondo MA Acta Crystallogr D Biol Crystallogr. 2003 Apr;59(Pt 4):644-53. Epub 2003, Mar 25. PMID:12657783<ref>PMID:12657783</ref>

-	~~===CRYSTAL STRUCTURE OF THE DI-TETRAHEME CYTOCHROME C3 FROM DESULFOVIBRIO GIGAS AT 1.2 ANG RESOLUTION===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_12657783}}~~	+
-		+
-	~~==About this Structure==~~	+
-	~~[[1gyo]] is~~ a ~~2 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org/wiki/Desulfovibrio_gigas Desulfovibrio gigas]~~. ~~Full crystallographic information is available from [http:~~/~~/oca.weizmann.ac.il/oca-bin/ocashort?id=1GYO OCA].~~	+

	==See Also==		==See Also==
	*[[Cytochrome c\|Cytochrome c]]		*[[Cytochrome c\|Cytochrome c]]
-		+	== References ==
-	==~~Reference~~==	+	<references/>
-	<~~ref group="xtra">PMID:012657783<~~/~~ref~~><~~references group="xtra"~~/>	+	__TOC__
		+	</StructureSection>
	[[Category: Desulfovibrio gigas]]		[[Category: Desulfovibrio gigas]]
	[[Category: Aragao, D.]]		[[Category: Aragao, D.]]

OCA at 07:31, 20 October 2012

OCA — Sat, 20 Oct 2012 07:31:02 GMT

←Older revision		Revision as of 07:31, 20 October 2012
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	==About this Structure==		==About this Structure==
-	[[1gyo]] is a 2 chain structure ~~of [[Cytochrome c]]~~ with sequence from [http://en.wikipedia.org/wiki/Desulfovibrio_gigas Desulfovibrio gigas]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1GYO OCA].	+	[[1gyo]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Desulfovibrio_gigas Desulfovibrio gigas]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1GYO OCA].

	==See Also==		==See Also==
Line 14:		Line 14:

	==Reference==		==Reference==
-	<ref group="xtra">PMID:012657783~~</ref><ref group="xtra">PMID:010499086</ref><ref group="xtra">PMID:003025018~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:012657783</ref><references group="xtra"/>
	[[Category: Desulfovibrio gigas]]		[[Category: Desulfovibrio gigas]]
	[[Category: Aragao, D.]]		[[Category: Aragao, D.]]