1hcm - Revision history

OCA at 12:24, 13 December 2023

OCA — Wed, 13 Dec 2023 12:24:04 GMT

←Older revision		Revision as of 12:24, 13 December 2023
Line 4:		Line 4:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1hcm]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Paracoccus_pantotrophus Paracoccus pantotrophus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1HCM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1HCM FirstGlance]. <br>		<table><tr><td colspan='2'>[[1hcm]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Paracoccus_pantotrophus Paracoccus pantotrophus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1HCM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1HCM FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=DHE:HEME+D'>DHE</scene>, <scene name='pdbligand=HEC:HEME+C'>HEC</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene~~></td></tr>~~	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.5Å</td></tr>
-	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1h9x\|1h9x]], [[1h9y\|1h9y]], [[1hj3\|1hj3]], [[1hj4\|1hj4]], [[1hj5\|1hj5]]</div></td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=DHE:HEME+D'>DHE</scene>, <scene name='pdbligand=HEC:HEME+C'>HEC</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1hcm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1hcm OCA], [https://pdbe.org/1hcm PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1hcm RCSB], [https://www.ebi.ac.uk/pdbsum/1hcm PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1hcm ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1hcm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1hcm OCA], [https://pdbe.org/1hcm PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1hcm RCSB], [https://www.ebi.ac.uk/pdbsum/1hcm PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1hcm ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/NIRS_PARPN NIRS_PARPN]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 30:		Line 32:
	==See Also==		==See Also==
	*[[Cytochrome C 3D structures\|Cytochrome C 3D structures]]		*[[Cytochrome C 3D structures\|Cytochrome C 3D structures]]
-	*[[~~Nitrite~~ reductase ~~3D structures~~\|~~Nitrite~~ reductase ~~3D structures~~]]	+	*[[Cytochrome c nitrite reductase\|Cytochrome c nitrite reductase]]
	== References ==		== References ==
	<references/>		<references/>
Line 37:		Line 39:
	[[Category: Large Structures]]		[[Category: Large Structures]]
	[[Category: Paracoccus pantotrophus]]		[[Category: Paracoccus pantotrophus]]
-	[[Category: Hajdu, J]]	+	[[Category: Hajdu J]]
-	[[Category: Sjogren, T]]	+	[[Category: Sjogren T]]
-	~~[[Category: Enzyme]]~~	+
-	~~[[Category: Nitrite reductase]]~~	+
-	~~[[Category: Oxidoreductase~~]]	+

OCA at 10:25, 17 February 2021

OCA — Wed, 17 Feb 2021 10:25:49 GMT

←Older revision		Revision as of 10:25, 17 February 2021
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	<StructureSection load='1hcm' size='340' side='right'caption='[[1hcm]], [[Resolution\|resolution]] 2.50Å' scene=''>		<StructureSection load='1hcm' size='340' side='right'caption='[[1hcm]], [[Resolution\|resolution]] 2.50Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1hcm]] is a 2 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Paracoccus_pantotrophus Paracoccus pantotrophus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1HCM OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1HCM FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1hcm]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Paracoccus_pantotrophus Paracoccus pantotrophus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1HCM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1HCM FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=DHE:HEME+D'>DHE</scene>, <scene name='pdbligand=HEC:HEME+C'>HEC</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=DHE:HEME+D'>DHE</scene>, <scene name='pdbligand=HEC:HEME+C'>HEC</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1h9x\|1h9x]], [[1h9y\|1h9y]], [[1hj3\|1hj3]], [[1hj4\|1hj4]], [[1hj5\|1hj5]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1h9x\|1h9x]], [[1h9y\|1h9y]], [[1hj3\|1hj3]], [[1hj4\|1hj4]], [[1hj5\|1hj5]]</div></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1hcm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1hcm OCA], [~~http~~://pdbe.org/1hcm PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=1hcm RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/1hcm PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=1hcm ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1hcm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1hcm OCA], [https://pdbe.org/1hcm PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1hcm RCSB], [https://www.ebi.ac.uk/pdbsum/1hcm PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1hcm ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 29:		Line 29:

	==See Also==		==See Also==
-	*[[Cytochrome c\|Cytochrome c]]	+	*[[Cytochrome C 3D structures\|Cytochrome C 3D structures]]
-	*[[Nitrite reductase\|Nitrite reductase]]	+	*[[Nitrite reductase 3D structures\|Nitrite reductase 3D structures]]
	== References ==		== References ==
	<references/>		<references/>

OCA at 11:37, 10 May 2019

OCA — Fri, 10 May 2019 11:37:42 GMT

←Older revision		Revision as of 11:37, 10 May 2019
Line 1:		Line 1:

	==Cytochrome cd1 Nitrite Reductase, oxidised from from tetragonal crystals==		==Cytochrome cd1 Nitrite Reductase, oxidised from from tetragonal crystals==
-	<StructureSection load='1hcm' size='340' side='right' caption='[[1hcm]], [[Resolution\|resolution]] 2.50Å' scene=''>	+	<StructureSection load='1hcm' size='340' side='right'caption='[[1hcm]], [[Resolution\|resolution]] 2.50Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1hcm]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Paracoccus_pantotrophus Paracoccus pantotrophus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1HCM OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1HCM FirstGlance]. <br>		<table><tr><td colspan='2'>[[1hcm]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Paracoccus_pantotrophus Paracoccus pantotrophus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1HCM OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1HCM FirstGlance]. <br>
Line 27:		Line 27:
	</div>		</div>
	<div class="pdbe-citations 1hcm" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 1hcm" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[Cytochrome c\|Cytochrome c]]
		+	*[[Nitrite reductase\|Nitrite reductase]]
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
	[[Category: Paracoccus pantotrophus]]		[[Category: Paracoccus pantotrophus]]
	[[Category: Hajdu, J]]		[[Category: Hajdu, J]]

OCA at 09:30, 10 January 2018

OCA — Wed, 10 Jan 2018 09:30:04 GMT

←Older revision		Revision as of 09:30, 10 January 2018
Line 1:		Line 1:
-	==~~CYTOCHROME CD1 NITRITE REDUCTASE~~, ~~OXIDISED FROM FROM TETRAGONAL CRYSTALS~~==	+
		+	==Cytochrome cd1 Nitrite Reductase, oxidised from from tetragonal crystals==
	<StructureSection load='1hcm' size='340' side='right' caption='[[1hcm]], [[Resolution\|resolution]] 2.50Å' scene=''>		<StructureSection load='1hcm' size='340' side='right' caption='[[1hcm]], [[Resolution\|resolution]] 2.50Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
Line 5:		Line 6:
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=DHE:HEME+D'>DHE</scene>, <scene name='pdbligand=HEC:HEME+C'>HEC</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=DHE:HEME+D'>DHE</scene>, <scene name='pdbligand=HEC:HEME+C'>HEC</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1h9x\|1h9x]], [[1h9y\|1h9y]], [[1hj3\|1hj3]], [[1hj4\|1hj4]], [[1hj5\|1hj5]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1h9x\|1h9x]], [[1h9y\|1h9y]], [[1hj3\|1hj3]], [[1hj4\|1hj4]], [[1hj5\|1hj5]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1hcm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1hcm OCA], [http://pdbe.org/1hcm PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1hcm RCSB], [http://www.ebi.ac.uk/pdbsum/1hcm PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1hcm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1hcm OCA], [http://pdbe.org/1hcm PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1hcm RCSB], [http://www.ebi.ac.uk/pdbsum/1hcm PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1hcm ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 11:		Line 12:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/hc/1hcm_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/hc/1hcm_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
Line 26:		Line 27:
	</div>		</div>
	<div class="pdbe-citations 1hcm" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 1hcm" style="background-color:#fffaf0;"></div>
-
-	==See Also==
-	*[[Cytochrome c\|Cytochrome c]]
-	*[[Nitric reductase\|Nitric reductase]]
	== References ==		== References ==
	<references/>		<references/>

OCA at 21:09, 9 February 2016

OCA — Tue, 09 Feb 2016 21:09:10 GMT

←Older revision		Revision as of 21:09, 9 February 2016
Line 15:		Line 15:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1hcm ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 02:03, 11 September 2015

OCA — Fri, 11 Sep 2015 02:03:30 GMT

←Older revision		Revision as of 02:03, 11 September 2015
Line 5:		Line 5:
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=DHE:HEME+D'>DHE</scene>, <scene name='pdbligand=HEC:HEME+C'>HEC</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=DHE:HEME+D'>DHE</scene>, <scene name='pdbligand=HEC:HEME+C'>HEC</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1h9x\|1h9x]], [[1h9y\|1h9y]], [[1hj3\|1hj3]], [[1hj4\|1hj4]], [[1hj5\|1hj5]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1h9x\|1h9x]], [[1h9y\|1h9y]], [[1hj3\|1hj3]], [[1hj4\|1hj4]], [[1hj5\|1hj5]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1hcm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1hcm OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1hcm RCSB], [http://www.ebi.ac.uk/pdbsum/1hcm PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1hcm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1hcm OCA], [http://pdbe.org/1hcm PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1hcm RCSB], [http://www.ebi.ac.uk/pdbsum/1hcm PDBsum]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 25:		Line 25:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 1hcm" style="background-color:#fffaf0;"></div>

	==See Also==		==See Also==

OCA at 22:20, 22 December 2014

OCA — Mon, 22 Dec 2014 22:20:52 GMT

←Older revision		Revision as of 22:20, 22 December 2014
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1hcm]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Paracoccus_pantotrophus Paracoccus pantotrophus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1HCM OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1HCM FirstGlance]. <br>		<table><tr><td colspan='2'>[[1hcm]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Paracoccus_pantotrophus Paracoccus pantotrophus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1HCM OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1HCM FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=DHE:HEME+D'>DHE</scene>, <scene name='pdbligand=HEC:HEME+C'>HEC</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=DHE:HEME+D'>DHE</scene>, <scene name='pdbligand=HEC:HEME+C'>HEC</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1h9x\|1h9x]], [[1h9y\|1h9y]], [[1hj3\|1hj3]], [[1hj4\|1hj4]], [[1hj5\|1hj5]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1h9x\|1h9x]], [[1h9y\|1h9y]], [[1hj3\|1hj3]], [[1hj4\|1hj4]], [[1hj5\|1hj5]]</td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1hcm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1hcm OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1hcm RCSB], [http://www.ebi.ac.uk/pdbsum/1hcm PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1hcm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1hcm OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1hcm RCSB], [http://www.ebi.ac.uk/pdbsum/1hcm PDBsum]</span></td></tr>
-	<table>	+	</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 34:		Line 34:
	</StructureSection>		</StructureSection>
	[[Category: Paracoccus pantotrophus]]		[[Category: Paracoccus pantotrophus]]
-	[[Category: Hajdu, J.]]	+	[[Category: Hajdu, J]]
-	[[Category: Sjogren, T.]]	+	[[Category: Sjogren, T]]
	[[Category: Enzyme]]		[[Category: Enzyme]]
	[[Category: Nitrite reductase]]		[[Category: Nitrite reductase]]
	[[Category: Oxidoreductase]]		[[Category: Oxidoreductase]]

OCA at 12:11, 28 September 2014

OCA — Sun, 28 Sep 2014 12:11:50 GMT

←Older revision		Revision as of 12:11, 28 September 2014
Line 1:		Line 1:
-	[[~~Image:~~1hcm.~~png~~\|~~left~~\|200px]]	+	==CYTOCHROME CD1 NITRITE REDUCTASE, OXIDISED FROM FROM TETRAGONAL CRYSTALS==
		+	<StructureSection load='1hcm' size='340' side='right' caption='[[1hcm]], [[Resolution\|resolution]] 2.50Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[1hcm]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Paracoccus_pantotrophus Paracoccus pantotrophus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1HCM OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1HCM FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=DHE:HEME+D'>DHE</scene>, <scene name='pdbligand=HEC:HEME+C'>HEC</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene><br>
		+	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1h9x\|1h9x]], [[1h9y\|1h9y]], [[1hj3\|1hj3]], [[1hj4\|1hj4]], [[1hj5\|1hj5]]</td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1hcm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1hcm OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1hcm RCSB], [http://www.ebi.ac.uk/pdbsum/1hcm PDBsum]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/hc/1hcm_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Cytochrome cd(1) nitrite reductase is a bifunctional enzyme, which can catalyze the 1-electron reduction of nitrite to nitric oxide and the 4-electron reduction of dioxygen to water. Here we describe the structure of reduced nitrite reductase, crystallized under anaerobic conditions. The structure reveals substantial domain rearrangements with the c domain rotated by 60 degrees and shifted by approximately 20 A compared with previously known structures from crystals grown under oxidizing conditions. This alternative conformation gives rise to different electron transfer routes between the c and d(1) domains and points to the involvement of elements of very large structural changes in the function in this enzyme. In the present structure, the c heme has a His-69/Met-106 ligation, and this ligation does not change upon oxidation in the crystal. The d(1) heme is penta-coordinated, and the d(1) iron is displaced from the heme plane by 0.5 A toward the proximal ligand, His-200. After oxidation, the iron moves into the d(1) heme plane. A surprising finding is that although reduced nitrite reductase can be readily oxidized by dioxygen in the new crystal, it cannot turnover with its other substrate, nitrite. The results suggest that the rearrangement of the domains affects catalysis and substrate selectivity.

-	~~{{STRUCTURE_1hcm\| PDB=1hcm \| SCENE= }}~~	+	The Structure of an alternative form of Paracoccus pantotrophus cytochrome cd(1) nitrite reductase.,Sjogren T, Hajdu J J Biol Chem. 2001 Aug 3;276(31):29450-5. Epub 2001 May 23. PMID:11373294<ref>PMID:11373294</ref>

-	~~===CYTOCHROME CD1 NITRITE REDUCTASE~~, ~~OXIDISED FROM FROM TETRAGONAL CRYSTALS===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_11373294}}~~	+
-		+
-	~~==About this Structure==~~	+
-	~~[[1hcm]] is~~ a ~~2 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org/wiki/Paracoccus_pantotrophus Paracoccus pantotrophus]~~. ~~Full crystallographic information is available from [http:~~/~~/oca.weizmann.ac.il/oca-bin/ocashort?id=1HCM OCA].~~	+

	==See Also==		==See Also==
	*[[Cytochrome c\|Cytochrome c]]		*[[Cytochrome c\|Cytochrome c]]
	*[[Nitric reductase\|Nitric reductase]]		*[[Nitric reductase\|Nitric reductase]]
-		+	== References ==
-	==~~Reference~~==	+	<references/>
-	<~~ref group="xtra">PMID:011373294<~~/~~ref~~><~~ref group="xtra">PMID:009311786</ref><ref group="xtra">PMID:007736589</ref><references group="xtra"~~/>	+	__TOC__
		+	</StructureSection>
	[[Category: Paracoccus pantotrophus]]		[[Category: Paracoccus pantotrophus]]
	[[Category: Hajdu, J.]]		[[Category: Hajdu, J.]]

OCA at 15:08, 20 October 2012

OCA — Sat, 20 Oct 2012 15:08:57 GMT

←Older revision		Revision as of 15:08, 20 October 2012
Line 8:		Line 8:

	==About this Structure==		==About this Structure==
-	[[1hcm]] is a 2 chain structure ~~of [[Cytochrome c]] and [[Nitric reductase]]~~ with sequence from [http://en.wikipedia.org/wiki/Paracoccus_pantotrophus Paracoccus pantotrophus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1HCM OCA].	+	[[1hcm]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Paracoccus_pantotrophus Paracoccus pantotrophus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1HCM OCA].

	==See Also==		==See Also==

OCA at 17:27, 26 July 2012

OCA — Thu, 26 Jul 2012 17:27:53 GMT

←Older revision		Revision as of 17:27, 26 July 2012
Line 1:		Line 1:
	[[Image:1hcm.png\|left\|200px]]		[[Image:1hcm.png\|left\|200px]]

-	<!--
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	{{STRUCTURE_1hcm\| PDB=1hcm \| SCENE= }}		{{STRUCTURE_1hcm\| PDB=1hcm \| SCENE= }}

	===CYTOCHROME CD1 NITRITE REDUCTASE, OXIDISED FROM FROM TETRAGONAL CRYSTALS===		===CYTOCHROME CD1 NITRITE REDUCTASE, OXIDISED FROM FROM TETRAGONAL CRYSTALS===

-
-	<!--
-	The line below this paragraph, {{ABSTRACT_PUBMED_11373294}}, adds the Publication Abstract to the page
-	(as it appears on PubMed at http://www.pubmed.gov), where 11373294 is the PubMed ID number.
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	{{ABSTRACT_PUBMED_11373294}}		{{ABSTRACT_PUBMED_11373294}}

	==About this Structure==		==About this Structure==
-	[[1hcm]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Paracoccus_pantotrophus Paracoccus pantotrophus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1HCM OCA].	+	[[1hcm]] is a 2 chain structure of [[Cytochrome c]] and [[Nitric reductase]] with sequence from [http://en.wikipedia.org/wiki/Paracoccus_pantotrophus Paracoccus pantotrophus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1HCM OCA].
		+
		+	==See Also==
		+	*[[Cytochrome c\|Cytochrome c]]
		+	*[[Nitric reductase\|Nitric reductase]]

	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~11373294~~</ref><ref group="xtra">PMID:~~9311786~~</ref><ref group="xtra">PMID:~~7736589~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:011373294</ref><ref group="xtra">PMID:009311786</ref><ref group="xtra">PMID:007736589</ref><references group="xtra"/>
	[[Category: Paracoccus pantotrophus]]		[[Category: Paracoccus pantotrophus]]
	[[Category: Hajdu, J.]]		[[Category: Hajdu, J.]]