1i81 - Revision history

OCA at 06:24, 9 August 2023

OCA — Wed, 09 Aug 2023 06:24:22 GMT

←Older revision		Revision as of 06:24, 9 August 2023
Line 3:		Line 3:
	<StructureSection load='1i81' size='340' side='right'caption='[[1i81]], [[Resolution\|resolution]] 2.00Å' scene=''>		<StructureSection load='1i81' size='340' side='right'caption='[[1i81]], [[Resolution\|resolution]] 2.00Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1i81]] is a 7 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~"methanobacterium_thermoautotrophicus"_(sic)_zeikus_and_wolfe_1972 "methanobacterium thermoautotrophicus" (sic) zeikus and wolfe 1972~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1I81 OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=1I81 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1i81]] is a 7 chain structure with sequence from [https://en.wikipedia.org/wiki/Methanothermobacter_thermautotrophicus Methanothermobacter thermautotrophicus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1I81 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1I81 FirstGlance]. <br>
-	</td></tr><tr id='~~related~~'><td class="sblockLbl"><b>[[~~Related_structure~~\|~~Related~~:]]</b></td><td class="sblockDat"~~>[[1d3b\|1d3b]], [[1b34\|1b34]]</td></tr>~~	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2Å</td></tr>
-	~~<tr~~ id~~='gene'><td class~~="~~sblockLbl~~">~~<b>~~[[~~Gene~~\|~~Gene:~~]]~~</b></td><td class="sblockDat">MT0649 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info~~&~~srchmode=5&id=145262 "Methanobacterium thermoautotrophicus" (sic) Zeikus and Wolfe 1972])~~</td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1i81 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1i81 OCA], [https://pdbe.org/1i81 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1i81 RCSB], [https://www.ebi.ac.uk/pdbsum/1i81 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1i81 ProSAT]</span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=1i81 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1i81 OCA], [~~http~~://pdbe.org/1i81 PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=1i81 RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/1i81 PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=1i81 ProSAT]</span></td></tr>	+
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/RUXX_METTH RUXX_METTH]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 35:		Line 36:
	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Collins, B M~~]]	+	[[Category: Methanothermobacter thermautotrophicus]]
-	[[Category: ~~Curmi, P M.G~~]]	+	[[Category: Collins BM]]
-	[[Category: ~~Dawes, I W~~]]	+	[[Category: Curmi PMG]]
-	[[Category: ~~Harrop, S J~~]]	+	[[Category: Dawes IW]]
-	[[Category: ~~Kornfeld, G D~~]]	+	[[Category: Harrop SJ]]
-	[[Category: ~~Mabbutt, B C~~]]	+	[[Category: Kornfeld GD]]
-	[[Category: ~~Curved anti-parallel beta sheet]]~~	+	[[Category: Mabbutt BC]]
-	~~[[Category: Structural genomic~~]]	+

OCA at 10:37, 18 November 2020

OCA — Wed, 18 Nov 2020 10:37:02 GMT

←Older revision		Revision as of 10:37, 18 November 2020
Line 1:		Line 1:

	==CRYSTAL STRUCTURE OF A HEPTAMERIC LSM PROTEIN FROM METHANOBACTERIUM THERMOAUTOTROPHICUM==		==CRYSTAL STRUCTURE OF A HEPTAMERIC LSM PROTEIN FROM METHANOBACTERIUM THERMOAUTOTROPHICUM==
-	<StructureSection load='1i81' size='340' side='right' caption='[[1i81]], [[Resolution\|resolution]] 2.00Å' scene=''>	+	<StructureSection load='1i81' size='340' side='right'caption='[[1i81]], [[Resolution\|resolution]] 2.00Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1i81]] is a 7 chain structure with sequence from [http://en.wikipedia.org/wiki/"methanobacterium_thermoautotrophicus"_(sic)_zeikus_and_wolfe_1972 "methanobacterium thermoautotrophicus" (sic) zeikus and wolfe 1972]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1I81 OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1I81 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1i81]] is a 7 chain structure with sequence from [http://en.wikipedia.org/wiki/"methanobacterium_thermoautotrophicus"_(sic)_zeikus_and_wolfe_1972 "methanobacterium thermoautotrophicus" (sic) zeikus and wolfe 1972]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1I81 OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=1I81 FirstGlance]. <br>
	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1d3b\|1d3b]], [[1b34\|1b34]]</td></tr>		</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1d3b\|1d3b]], [[1b34\|1b34]]</td></tr>
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">MT0649 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=145262 "Methanobacterium thermoautotrophicus" (sic) Zeikus and Wolfe 1972])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">MT0649 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=145262 "Methanobacterium thermoautotrophicus" (sic) Zeikus and Wolfe 1972])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1i81 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1i81 OCA], [http://pdbe.org/1i81 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1i81 RCSB], [http://www.ebi.ac.uk/pdbsum/1i81 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1i81 ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=1i81 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1i81 OCA], [http://pdbe.org/1i81 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1i81 RCSB], [http://www.ebi.ac.uk/pdbsum/1i81 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1i81 ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 27:		Line 27:
	</div>		</div>
	<div class="pdbe-citations 1i81" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 1i81" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[Sm-like protein\|Sm-like protein]]
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
	[[Category: Collins, B M]]		[[Category: Collins, B M]]
	[[Category: Curmi, P M.G]]		[[Category: Curmi, P M.G]]

OCA at 09:23, 10 January 2018

OCA — Wed, 10 Jan 2018 09:23:25 GMT

←Older revision		Revision as of 09:23, 10 January 2018
Line 1:		Line 1:
		+
	==CRYSTAL STRUCTURE OF A HEPTAMERIC LSM PROTEIN FROM METHANOBACTERIUM THERMOAUTOTROPHICUM==		==CRYSTAL STRUCTURE OF A HEPTAMERIC LSM PROTEIN FROM METHANOBACTERIUM THERMOAUTOTROPHICUM==
	<StructureSection load='1i81' size='340' side='right' caption='[[1i81]], [[Resolution\|resolution]] 2.00Å' scene=''>		<StructureSection load='1i81' size='340' side='right' caption='[[1i81]], [[Resolution\|resolution]] 2.00Å' scene=''>
Line 5:		Line 6:
	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1d3b\|1d3b]], [[1b34\|1b34]]</td></tr>		</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1d3b\|1d3b]], [[1b34\|1b34]]</td></tr>
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">MT0649 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=145262 "Methanobacterium thermoautotrophicus" (sic) Zeikus and Wolfe 1972])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">MT0649 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=145262 "Methanobacterium thermoautotrophicus" (sic) Zeikus and Wolfe 1972])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1i81 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1i81 OCA], [http://pdbe.org/1i81 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1i81 RCSB], [http://www.ebi.ac.uk/pdbsum/1i81 PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1i81 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1i81 OCA], [http://pdbe.org/1i81 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1i81 RCSB], [http://www.ebi.ac.uk/pdbsum/1i81 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1i81 ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 11:		Line 12:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/i8/1i81_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/i8/1i81_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
Line 26:		Line 27:
	</div>		</div>
	<div class="pdbe-citations 1i81" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 1i81" style="background-color:#fffaf0;"></div>
-
-	==See Also==
-	*[[Sm-like protein\|Sm-like protein]]
	== References ==		== References ==
	<references/>		<references/>

OCA at 09:22, 7 February 2016

OCA — Sun, 07 Feb 2016 09:22:00 GMT

←Older revision		Revision as of 09:22, 7 February 2016
Line 15:		Line 15:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1i81 ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 23:59, 9 September 2015

OCA — Wed, 09 Sep 2015 23:59:54 GMT

←Older revision		Revision as of 23:59, 9 September 2015
Line 2:		Line 2:
	<StructureSection load='1i81' size='340' side='right' caption='[[1i81]], [[Resolution\|resolution]] 2.00Å' scene=''>		<StructureSection load='1i81' size='340' side='right' caption='[[1i81]], [[Resolution\|resolution]] 2.00Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1i81]] is a 7 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Methanothermobacter_thermautotrophicus Methanothermobacter thermautotrophicus~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1I81 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1I81 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1i81]] is a 7 chain structure with sequence from [http://en.wikipedia.org/wiki/"methanobacterium_thermoautotrophicus"_(sic)_zeikus_and_wolfe_1972 "methanobacterium thermoautotrophicus" (sic) zeikus and wolfe 1972]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1I81 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1I81 FirstGlance]. <br>
	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1d3b\|1d3b]], [[1b34\|1b34]]</td></tr>		</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1d3b\|1d3b]], [[1b34\|1b34]]</td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">MT0649 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=145262 ~~Methanothermobacter thermautotrophicus~~])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">MT0649 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=145262 "Methanobacterium thermoautotrophicus" (sic) Zeikus and Wolfe 1972])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1i81 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1i81 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1i81 RCSB], [http://www.ebi.ac.uk/pdbsum/1i81 PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1i81 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1i81 OCA], [http://pdbe.org/1i81 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1i81 RCSB], [http://www.ebi.ac.uk/pdbsum/1i81 PDBsum]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 25:		Line 25:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 1i81" style="background-color:#fffaf0;"></div>

	==See Also==		==See Also==
Line 32:		Line 33:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Methanothermobacter thermautotrophicus]]
	[[Category: Collins, B M]]		[[Category: Collins, B M]]
	[[Category: Curmi, P M.G]]		[[Category: Curmi, P M.G]]

OCA at 09:36, 2 January 2015

OCA — Fri, 02 Jan 2015 09:36:26 GMT

←Older revision		Revision as of 09:36, 2 January 2015
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1i81]] is a 7 chain structure with sequence from [http://en.wikipedia.org/wiki/Methanothermobacter_thermautotrophicus Methanothermobacter thermautotrophicus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1I81 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1I81 FirstGlance]. <br>		<table><tr><td colspan='2'>[[1i81]] is a 7 chain structure with sequence from [http://en.wikipedia.org/wiki/Methanothermobacter_thermautotrophicus Methanothermobacter thermautotrophicus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1I81 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1I81 FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1d3b\|1d3b]], [[1b34\|1b34]]</td></tr>	+	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1d3b\|1d3b]], [[1b34\|1b34]]</td></tr>
-	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">MT0649 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=145262 Methanothermobacter thermautotrophicus])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">MT0649 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=145262 Methanothermobacter thermautotrophicus])</td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1i81 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1i81 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1i81 RCSB], [http://www.ebi.ac.uk/pdbsum/1i81 PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1i81 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1i81 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1i81 RCSB], [http://www.ebi.ac.uk/pdbsum/1i81 PDBsum]</span></td></tr>
-	<table>	+	</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 33:		Line 33:
	</StructureSection>		</StructureSection>
	[[Category: Methanothermobacter thermautotrophicus]]		[[Category: Methanothermobacter thermautotrophicus]]
-	[[Category: Collins, B M.]]	+	[[Category: Collins, B M]]
-	[[Category: Curmi, P M.G.]]	+	[[Category: Curmi, P M.G]]
-	[[Category: Dawes, I W.]]	+	[[Category: Dawes, I W]]
-	[[Category: Harrop, S J.]]	+	[[Category: Harrop, S J]]
-	[[Category: Kornfeld, G D.]]	+	[[Category: Kornfeld, G D]]
-	[[Category: Mabbutt, B C.]]	+	[[Category: Mabbutt, B C]]
	[[Category: Curved anti-parallel beta sheet]]		[[Category: Curved anti-parallel beta sheet]]
	[[Category: Structural genomic]]		[[Category: Structural genomic]]

OCA at 11:19, 28 September 2014

OCA — Sun, 28 Sep 2014 11:19:19 GMT

←Older revision		Revision as of 11:19, 28 September 2014
Line 1:		Line 1:
-	[[~~Image:~~1i81.~~png~~\|~~left~~\|200px]]	+	==CRYSTAL STRUCTURE OF A HEPTAMERIC LSM PROTEIN FROM METHANOBACTERIUM THERMOAUTOTROPHICUM==
		+	<StructureSection load='1i81' size='340' side='right' caption='[[1i81]], [[Resolution\|resolution]] 2.00Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[1i81]] is a 7 chain structure with sequence from [http://en.wikipedia.org/wiki/Methanothermobacter_thermautotrophicus Methanothermobacter thermautotrophicus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1I81 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1I81 FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1d3b\|1d3b]], [[1b34\|1b34]]</td></tr>
		+	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">MT0649 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=145262 Methanothermobacter thermautotrophicus])</td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1i81 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1i81 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1i81 RCSB], [http://www.ebi.ac.uk/pdbsum/1i81 PDBsum]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/i8/1i81_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	The Sm/Lsm proteins associate with small nuclear RNA to form the core of small nuclear ribonucleoproteins, required for processes as diverse as pre-mRNA splicing, mRNA degradation and telomere formation. The Lsm proteins from archaea are likely to represent the ancestral Sm/Lsm domain. Here, we present the crystal structure of the Lsm alpha protein from the thermophilic archaeon Methanobacterium thermoautotrophicum at 2.0 A resolution. The Lsm alpha protein crystallizes as a heptameric ring comprised of seven identical subunits interacting via beta-strand pairing and hydrophobic interactions. The heptamer can be viewed as a propeller-like structure in which each blade consists of a seven-stranded antiparallel beta-sheet formed from neighbouring subunits. There are seven slots on the inner surface of the heptamer ring, each of which is lined by Asp, Asn and Arg residues that are highly conserved in the Sm/Lsm sequences. These conserved slots are likely to form the RNA-binding site. In archaea, the gene encoding Lsm alpha is located next to the L37e ribosomal protein gene in a putative operon, suggesting a role for the Lsm alpha complex in ribosome function or biogenesis.

-	~~{{STRUCTURE_1i81\| PDB=1i81 \| SCENE= }}~~	+	Crystal structure of a heptameric Sm-like protein complex from archaea: implications for the structure and evolution of snRNPs.,Collins BM, Harrop SJ, Kornfeld GD, Dawes IW, Curmi PM, Mabbutt BC J Mol Biol. 2001 Jun 15;309(4):915-23. PMID:11399068<ref>PMID:11399068</ref>

-	~~===CRYSTAL STRUCTURE OF A HEPTAMERIC LSM PROTEIN FROM METHANOBACTERIUM THERMOAUTOTROPHICUM===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_11399068}}~~	+
-		+
-	~~==About this Structure==~~	+
-	~~[[1i81]] is~~ a ~~7 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org/wiki/Methanothermobacter_thermautotrophicus Methanothermobacter thermautotrophicus]~~. ~~Full crystallographic information is available from [http:~~/~~/oca.weizmann.ac.il/oca-bin/ocashort?id=1I81 OCA].~~	+

	==See Also==		==See Also==
	*[[Sm-like protein\|Sm-like protein]]		*[[Sm-like protein\|Sm-like protein]]
-		+	== References ==
-	==~~Reference~~==	+	<references/>
-	<~~ref group="xtra">PMID:011399068<~~/~~ref~~><~~references group="xtra"~~/>	+	__TOC__
		+	</StructureSection>
	[[Category: Methanothermobacter thermautotrophicus]]		[[Category: Methanothermobacter thermautotrophicus]]
	[[Category: Collins, B M.]]		[[Category: Collins, B M.]]

OCA: Protected "1i81" [edit=sysop:move=sysop]

OCA — Wed, 21 Nov 2012 16:07:19 GMT

Protected "1i81" [edit=sysop:move=sysop]

←Older revision

Revision as of 16:07, 21 November 2012

OCA at 16:07, 21 November 2012

OCA — Wed, 21 Nov 2012 16:07:15 GMT

←Older revision		Revision as of 16:07, 21 November 2012
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-	{{Seed}}
	[[Image:1i81.png\|left\|200px]]		[[Image:1i81.png\|left\|200px]]

-	<!--
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	{{STRUCTURE_1i81\| PDB=1i81 \| SCENE= }}		{{STRUCTURE_1i81\| PDB=1i81 \| SCENE= }}

	===CRYSTAL STRUCTURE OF A HEPTAMERIC LSM PROTEIN FROM METHANOBACTERIUM THERMOAUTOTROPHICUM===		===CRYSTAL STRUCTURE OF A HEPTAMERIC LSM PROTEIN FROM METHANOBACTERIUM THERMOAUTOTROPHICUM===

-
-	<!--
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	{{ABSTRACT_PUBMED_11399068}}		{{ABSTRACT_PUBMED_11399068}}

	==About this Structure==		==About this Structure==
-	~~1I81~~ is a 7 ~~chains~~ structure ~~of sequences~~ from [http://en.wikipedia.org/wiki/Methanothermobacter_thermautotrophicus Methanothermobacter thermautotrophicus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1I81 OCA].	+	[[1i81]] is a 7 chain structure with sequence from [http://en.wikipedia.org/wiki/Methanothermobacter_thermautotrophicus Methanothermobacter thermautotrophicus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1I81 OCA].
		+
		+	==See Also==
		+	*[[Sm-like protein\|Sm-like protein]]

	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~11399068~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:011399068</ref><references group="xtra"/>
	[[Category: Methanothermobacter thermautotrophicus]]		[[Category: Methanothermobacter thermautotrophicus]]
	[[Category: Collins, B M.]]		[[Category: Collins, B M.]]
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	[[Category: Mabbutt, B C.]]		[[Category: Mabbutt, B C.]]
	[[Category: Curved anti-parallel beta sheet]]		[[Category: Curved anti-parallel beta sheet]]
-		+	[[Category: Structural genomic]]
-	~~''Page seeded by~~ [~~http~~:~~//oca.weizmann.ac.il/oca OCA~~ ] ~~on Mon Feb 16 12:51:49 2009''~~	+

OCA at 10:51, 16 February 2009

OCA — Mon, 16 Feb 2009 10:51:49 GMT

←Older revision		Revision as of 10:51, 16 February 2009
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	==About this Structure==		==About this Structure==
-	1I81 is a ~~[[Single protein]]~~ structure of ~~sequence~~ from [http://en.wikipedia.org/wiki/Methanothermobacter_thermautotrophicus Methanothermobacter thermautotrophicus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1I81 OCA].	+	1I81 is a 7 chains structure of sequences from [http://en.wikipedia.org/wiki/Methanothermobacter_thermautotrophicus Methanothermobacter thermautotrophicus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1I81 OCA].

	==Reference==		==Reference==
-	Crystal structure of a heptameric Sm-like protein complex from archaea: implications for the structure and evolution of snRNPs., Collins BM, Harrop SJ, Kornfeld GD, Dawes IW, Curmi PM, Mabbutt BC, J Mol Biol. 2001 Jun 15;309(4):915-23. PMID:~~[http:~~//~~www.ncbi.nlm.nih.gov/pubmed/11399068 11399068]~~	+	<ref group="xtra">PMID:11399068</ref><references group="xtra"/>
	[[Category: Methanothermobacter thermautotrophicus]]		[[Category: Methanothermobacter thermautotrophicus]]
-	[[Category: Single protein]]
	[[Category: Collins, B M.]]		[[Category: Collins, B M.]]
	[[Category: Curmi, P M.G.]]		[[Category: Curmi, P M.G.]]
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	[[Category: Curved anti-parallel beta sheet]]		[[Category: Curved anti-parallel beta sheet]]

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on ~~Tue Jul 1 10~~:33:~~41 2008~~''	+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Feb 16 12:51:49 2009''