1iqp - Revision history

OCA at 23:35, 27 December 2023

OCA — Wed, 27 Dec 2023 23:35:22 GMT

←Older revision		Revision as of 23:35, 27 December 2023
Line 3:		Line 3:
	<StructureSection load='1iqp' size='340' side='right'caption='[[1iqp]], [[Resolution\|resolution]] 2.80Å' scene=''>		<StructureSection load='1iqp' size='340' side='right'caption='[[1iqp]], [[Resolution\|resolution]] 2.80Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1iqp]] is a 6 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Atcc_43587 Atcc 43587~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1IQP OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=1IQP FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1iqp]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Pyrococcus_furiosus Pyrococcus furiosus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1IQP OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1IQP FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=ADP:ADENOSINE~~-~~5-DIPHOSPHATE'>ADP</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.8Å</td></tr>
-	<tr id='~~gene~~'><td class="sblockLbl"><b>[[~~Gene~~\|~~Gene~~:]]</b></td><td class="sblockDat">~~rfcs ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode~~=~~Info&srchmode~~=5~~&id=2261 ATCC 43587])~~</td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ADP:ADENOSINE-5-DIPHOSPHATE'>ADP</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=1iqp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1iqp OCA], [~~http~~://pdbe.org/1iqp PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=1iqp RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/1iqp PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=1iqp ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1iqp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1iqp OCA], [https://pdbe.org/1iqp PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1iqp RCSB], [https://www.ebi.ac.uk/pdbsum/1iqp PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1iqp ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[~~[http~~://www.uniprot.org/uniprot/RFCS_PYRFU RFCS_PYRFU]] Part of the RFC clamp loader complex which loads the PCNA sliding clamp onto DNA. The complex possesses DNA-dependent ATPase activity which is further stimulated by PCNA.<ref>PMID:11274122</ref> <ref>PMID:12296822</ref>	+	[https://www.uniprot.org/uniprot/RFCS_PYRFU RFCS_PYRFU] Part of the RFC clamp loader complex which loads the PCNA sliding clamp onto DNA. The complex possesses DNA-dependent ATPase activity which is further stimulated by PCNA.<ref>PMID:11274122</ref> <ref>PMID:12296822</ref>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 33:		Line 33:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Atcc 43587]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Cann~~, I K.O~~]]	+	[[Category: Pyrococcus furiosus]]
-	[[Category: Ishino, S]]	+	[[Category: Cann IKO]]
-	[[Category: Ishino, Y]]	+	[[Category: Ishino S]]
-	[[Category: Morikawa, K]]	+	[[Category: Ishino Y]]
-	[[Category: Oyama, T]]	+	[[Category: Morikawa K]]
-	~~[[Category: Clamp loader]]~~	+	[[Category: Oyama T]]
-	~~[[Category: Complex with adp]]~~	+
-	~~[[Category: Extended aaa-atpase domain]]~~	+
-	~~[[Category: Replication~~]]	+

OCA at 10:40, 18 November 2020

OCA — Wed, 18 Nov 2020 10:40:53 GMT

←Older revision		Revision as of 10:40, 18 November 2020
Line 1:		Line 1:

	==Crystal Structure of the Clamp Loader Small Subunit from Pyrococcus furiosus==		==Crystal Structure of the Clamp Loader Small Subunit from Pyrococcus furiosus==
-	<StructureSection load='1iqp' size='340' side='right' caption='[[1iqp]], [[Resolution\|resolution]] 2.80Å' scene=''>	+	<StructureSection load='1iqp' size='340' side='right'caption='[[1iqp]], [[Resolution\|resolution]] 2.80Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1iqp]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_43587 Atcc 43587]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1IQP OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1IQP FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1iqp]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_43587 Atcc 43587]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1IQP OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=1IQP FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ADP:ADENOSINE-5-DIPHOSPHATE'>ADP</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ADP:ADENOSINE-5-DIPHOSPHATE'>ADP</scene></td></tr>
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">rfcs ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2261 ATCC 43587])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">rfcs ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2261 ATCC 43587])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1iqp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1iqp OCA], [http://pdbe.org/1iqp PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1iqp RCSB], [http://www.ebi.ac.uk/pdbsum/1iqp PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1iqp ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=1iqp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1iqp OCA], [http://pdbe.org/1iqp PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1iqp RCSB], [http://www.ebi.ac.uk/pdbsum/1iqp PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1iqp ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 34:		Line 34:
	</StructureSection>		</StructureSection>
	[[Category: Atcc 43587]]		[[Category: Atcc 43587]]
		+	[[Category: Large Structures]]
	[[Category: Cann, I K.O]]		[[Category: Cann, I K.O]]
	[[Category: Ishino, S]]		[[Category: Ishino, S]]

OCA at 08:51, 17 January 2018

OCA — Wed, 17 Jan 2018 08:51:57 GMT

←Older revision		Revision as of 08:51, 17 January 2018
Line 1:		Line 1:
		+
	==Crystal Structure of the Clamp Loader Small Subunit from Pyrococcus furiosus==		==Crystal Structure of the Clamp Loader Small Subunit from Pyrococcus furiosus==
	<StructureSection load='1iqp' size='340' side='right' caption='[[1iqp]], [[Resolution\|resolution]] 2.80Å' scene=''>		<StructureSection load='1iqp' size='340' side='right' caption='[[1iqp]], [[Resolution\|resolution]] 2.80Å' scene=''>
Line 5:		Line 6:
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ADP:ADENOSINE-5-DIPHOSPHATE'>ADP</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ADP:ADENOSINE-5-DIPHOSPHATE'>ADP</scene></td></tr>
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">rfcs ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2261 ATCC 43587])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">rfcs ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2261 ATCC 43587])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1iqp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1iqp OCA], [http://pdbe.org/1iqp PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1iqp RCSB], [http://www.ebi.ac.uk/pdbsum/1iqp PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1iqp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1iqp OCA], [http://pdbe.org/1iqp PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1iqp RCSB], [http://www.ebi.ac.uk/pdbsum/1iqp PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1iqp ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 13:		Line 14:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/iq/1iqp_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/iq/1iqp_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>

OCA at 08:43, 7 February 2016

OCA — Sun, 07 Feb 2016 08:43:58 GMT

←Older revision		Revision as of 08:43, 7 February 2016
Line 17:		Line 17:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1iqp ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 23:44, 9 September 2015

OCA — Wed, 09 Sep 2015 23:44:59 GMT

←Older revision		Revision as of 23:44, 9 September 2015
Line 2:		Line 2:
	<StructureSection load='1iqp' size='340' side='right' caption='[[1iqp]], [[Resolution\|resolution]] 2.80Å' scene=''>		<StructureSection load='1iqp' size='340' side='right' caption='[[1iqp]], [[Resolution\|resolution]] 2.80Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1iqp]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Pyrococcus_furiosus Pyrococcus furiosus~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1IQP OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1IQP FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1iqp]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_43587 Atcc 43587]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1IQP OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1IQP FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ADP:ADENOSINE-5-DIPHOSPHATE'>ADP</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ADP:ADENOSINE-5-DIPHOSPHATE'>ADP</scene></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">rfcs ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2261 ~~Pyrococcus furiosus~~])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">rfcs ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2261 ATCC 43587])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1iqp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1iqp OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1iqp RCSB], [http://www.ebi.ac.uk/pdbsum/1iqp PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1iqp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1iqp OCA], [http://pdbe.org/1iqp PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1iqp RCSB], [http://www.ebi.ac.uk/pdbsum/1iqp PDBsum]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 27:		Line 27:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 1iqp" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Pyrococcus furiosus~~]]	+	[[Category: Atcc 43587]]
	[[Category: Cann, I K.O]]		[[Category: Cann, I K.O]]
	[[Category: Ishino, S]]		[[Category: Ishino, S]]

OCA at 13:44, 24 December 2014

OCA — Wed, 24 Dec 2014 13:44:00 GMT

←Older revision		Revision as of 13:44, 24 December 2014
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1iqp]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Pyrococcus_furiosus Pyrococcus furiosus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1IQP OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1IQP FirstGlance]. <br>		<table><tr><td colspan='2'>[[1iqp]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Pyrococcus_furiosus Pyrococcus furiosus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1IQP OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1IQP FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ADP:ADENOSINE-5-DIPHOSPHATE'>ADP</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ADP:ADENOSINE-5-DIPHOSPHATE'>ADP</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">rfcs ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2261 Pyrococcus furiosus])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">rfcs ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2261 Pyrococcus furiosus])</td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1iqp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1iqp OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1iqp RCSB], [http://www.ebi.ac.uk/pdbsum/1iqp PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1iqp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1iqp OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1iqp RCSB], [http://www.ebi.ac.uk/pdbsum/1iqp PDBsum]</span></td></tr>
-	<table>	+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/RFCS_PYRFU RFCS_PYRFU]] Part of the RFC clamp loader complex which loads the PCNA sliding clamp onto DNA. The complex possesses DNA-dependent ATPase activity which is further stimulated by PCNA.<ref>PMID:11274122</ref> <ref>PMID:12296822</ref>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 30:		Line 32:
	</StructureSection>		</StructureSection>
	[[Category: Pyrococcus furiosus]]		[[Category: Pyrococcus furiosus]]
-	[[Category: Cann, I K.O.]]	+	[[Category: Cann, I K.O]]
-	[[Category: Ishino, S.]]	+	[[Category: Ishino, S]]
-	[[Category: Ishino, Y.]]	+	[[Category: Ishino, Y]]
-	[[Category: Morikawa, K.]]	+	[[Category: Morikawa, K]]
-	[[Category: Oyama, T.]]	+	[[Category: Oyama, T]]
	[[Category: Clamp loader]]		[[Category: Clamp loader]]
	[[Category: Complex with adp]]		[[Category: Complex with adp]]
	[[Category: Extended aaa-atpase domain]]		[[Category: Extended aaa-atpase domain]]
	[[Category: Replication]]		[[Category: Replication]]

OCA at 11:00, 28 September 2014

OCA — Sun, 28 Sep 2014 11:00:08 GMT

←Older revision		Revision as of 11:00, 28 September 2014
Line 1:		Line 1:
-	[[~~Image:~~1iqp.~~png~~\|~~left~~\|200px]]	+	==Crystal Structure of the Clamp Loader Small Subunit from Pyrococcus furiosus==
		+	<StructureSection load='1iqp' size='340' side='right' caption='[[1iqp]], [[Resolution\|resolution]] 2.80Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[1iqp]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Pyrococcus_furiosus Pyrococcus furiosus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1IQP OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1IQP FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ADP:ADENOSINE-5-DIPHOSPHATE'>ADP</scene><br>
		+	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">rfcs ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2261 Pyrococcus furiosus])</td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1iqp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1iqp OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1iqp RCSB], [http://www.ebi.ac.uk/pdbsum/1iqp PDBsum]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/iq/1iqp_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	In eukaryotic DNA replication, replication factor-C (RFC) acts as the clamp loader, which correctly installs the sliding clamp onto DNA strands at replication forks. The eukaryotic RFC is a complex consisting of one large and four small subunits. We have determined the crystal structure of the clamp loader small subunit (RFCS) from Pyrococcus furiosus. The six subunits, of which four bind ADP in their canonical nucleotide binding clefts, assemble into a dimer of semicircular trimers. The crescent-like architecture of each subunit formed by the three domains resembles that of the delta' subunit of the E. coli clamp loader. The trimeric architecture of archaeal RFCS, with its mobile N-terminal domains, involves intersubunit interactions that may be conserved in eukaryotic functional complexes.

-	~~{{STRUCTURE_1iqp\| PDB=1iqp \| SCENE= }}~~	+	Atomic structure of the clamp loader small subunit from Pyrococcus furiosus.,Oyama T, Ishino Y, Cann IK, Ishino S, Morikawa K Mol Cell. 2001 Aug;8(2):455-63. PMID:11545747<ref>PMID:11545747</ref>

-	~~===Crystal Structure~~ of the ~~Clamp Loader Small Subunit from Pyrococcus furiosus===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_11545747}}~~	+	== References ==
-		+	<references/>
-	~~==About this Structure==~~	+	__TOC__
-	~~[[1iqp]] is a 6 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org/wiki/Pyrococcus_furiosus Pyrococcus furiosus]~~. ~~Full crystallographic information is available from [http:~~/~~/oca.weizmann.ac.il/oca-bin/ocashort?id=1IQP OCA].~~	+	</StructureSection>
-		+
-	==~~Reference~~==	+
-	<~~ref group="xtra">PMID:011545747<~~/~~ref~~><~~references group="xtra"~~/>	+
	[[Category: Pyrococcus furiosus]]		[[Category: Pyrococcus furiosus]]
	[[Category: Cann, I K.O.]]		[[Category: Cann, I K.O.]]

OCA: Protected "1iqp" [edit=sysop:move=sysop]

OCA — Wed, 28 Nov 2012 15:07:52 GMT

Protected "1iqp" [edit=sysop:move=sysop]

←Older revision

Revision as of 15:07, 28 November 2012

OCA at 15:07, 28 November 2012

OCA — Wed, 28 Nov 2012 15:07:49 GMT

←Older revision		Revision as of 15:07, 28 November 2012
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-	{{Seed}}
	[[Image:1iqp.png\|left\|200px]]		[[Image:1iqp.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_1iqp", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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	{{STRUCTURE_1iqp\| PDB=1iqp \| SCENE= }}		{{STRUCTURE_1iqp\| PDB=1iqp \| SCENE= }}

	===Crystal Structure of the Clamp Loader Small Subunit from Pyrococcus furiosus===		===Crystal Structure of the Clamp Loader Small Subunit from Pyrococcus furiosus===

-
-	<!--
-	The line below this paragraph, {{ABSTRACT_PUBMED_11545747}}, adds the Publication Abstract to the page
-	(as it appears on PubMed at http://www.pubmed.gov), where 11545747 is the PubMed ID number.
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	{{ABSTRACT_PUBMED_11545747}}		{{ABSTRACT_PUBMED_11545747}}

	==About this Structure==		==About this Structure==
-	~~1IQP~~ is a 6 ~~chains~~ structure ~~of sequences~~ from [http://en.wikipedia.org/wiki/Pyrococcus_furiosus Pyrococcus furiosus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1IQP OCA].	+	[[1iqp]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Pyrococcus_furiosus Pyrococcus furiosus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1IQP OCA].

	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~11545747~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:011545747</ref><references group="xtra"/>
	[[Category: Pyrococcus furiosus]]		[[Category: Pyrococcus furiosus]]
	[[Category: Cann, I K.O.]]		[[Category: Cann, I K.O.]]
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	[[Category: Complex with adp]]		[[Category: Complex with adp]]
	[[Category: Extended aaa-atpase domain]]		[[Category: Extended aaa-atpase domain]]
-		+	[[Category: Replication]]
-	~~''Page seeded by~~ [~~http~~:~~//oca.weizmann.ac.il/oca OCA~~ ] ~~on Mon Feb 16 12:39:53 2009''~~	+

OCA at 10:39, 16 February 2009

OCA — Mon, 16 Feb 2009 10:39:53 GMT

←Older revision		Revision as of 10:39, 16 February 2009
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	==About this Structure==		==About this Structure==
-	1IQP is a ~~[[Single protein]]~~ structure of ~~sequence~~ from [http://en.wikipedia.org/wiki/Pyrococcus_furiosus Pyrococcus furiosus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1IQP OCA].	+	1IQP is a 6 chains structure of sequences from [http://en.wikipedia.org/wiki/Pyrococcus_furiosus Pyrococcus furiosus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1IQP OCA].

	==Reference==		==Reference==
-	~~Atomic structure of the clamp loader small subunit from Pyrococcus furiosus., Oyama T, Ishino Y, Cann IK, Ishino S, Morikawa K, Mol Cell. 2001 Aug;8(2):455-63.~~ PMID:~~[http:~~//~~www.ncbi.nlm.nih.gov/pubmed/11545747 11545747]~~	+	<ref group="xtra">PMID:11545747</ref><references group="xtra"/>
	[[Category: Pyrococcus furiosus]]		[[Category: Pyrococcus furiosus]]
-	[[Category: Single protein]]
	[[Category: Cann, I K.O.]]		[[Category: Cann, I K.O.]]
	[[Category: Ishino, S.]]		[[Category: Ishino, S.]]
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	[[Category: Extended aaa-atpase domain]]		[[Category: Extended aaa-atpase domain]]

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on ~~Tue Jul 1 13~~:49:~~35 2008~~''	+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Feb 16 12:39:53 2009''