1iuf - Revision history

OCA at 23:37, 27 December 2023

OCA — Wed, 27 Dec 2023 23:37:13 GMT

←Older revision		Revision as of 23:37, 27 December 2023
Line 1:		Line 1:

	==LOW RESOLUTION SOLUTION STRUCTURE OF THE TWO DNA-BINDING DOMAINS IN Schizosaccharomyces pombe ABP1 PROTEIN==		==LOW RESOLUTION SOLUTION STRUCTURE OF THE TWO DNA-BINDING DOMAINS IN Schizosaccharomyces pombe ABP1 PROTEIN==
-	<StructureSection load='1iuf' size='340' side='right'caption='[[1iuf~~]], [[NMR_Ensembles_of_Models \| 1 NMR models~~]]' scene=''>	+	<StructureSection load='1iuf' size='340' side='right'caption='[[1iuf]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1iuf]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Cbs_356 Cbs 356~~]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1IUF OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1IUF FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1iuf]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Schizosaccharomyces_pombe Schizosaccharomyces pombe]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1IUF OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1IUF FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1iuf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1iuf OCA], [https://pdbe.org/1iuf PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1iuf RCSB], [https://www.ebi.ac.uk/pdbsum/1iuf PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1iuf ProSAT], [https://www.topsan.org/Proteins/RSGI/1iuf TOPSAN]</span></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1iuf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1iuf OCA], [https://pdbe.org/1iuf PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1iuf RCSB], [https://www.ebi.ac.uk/pdbsum/1iuf PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1iuf ProSAT], [https://www.topsan.org/Proteins/RSGI/1iuf TOPSAN]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[https://www.uniprot.org/uniprot/ABP1_SCHPO ABP1_SCHPO]] Binds, preferentially, to the Maundrell ARS consensus sequence within ARS3002.	+	[https://www.uniprot.org/uniprot/ABP1_SCHPO ABP1_SCHPO] Binds, preferentially, to the Maundrell ARS consensus sequence within ARS3002.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 31:		Line 32:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Cbs 356]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Iwahara, J]]	+	[[Category: Schizosaccharomyces pombe]]
-	[[Category: Kigawa, T]]	+	[[Category: Iwahara J]]
-	[[Category: Kikuchi, J]]	+	[[Category: Kigawa T]]
-	[[Category: Murakami, Y]]	+	[[Category: Kikuchi J]]
-	[[Category: Okazaki, T]]	+	[[Category: Murakami Y]]
-	~~[[Category: Structural genomic~~]]	+	[[Category: Okazaki T]]
-	[[Category: Yokoyama, S]]	+	[[Category: Yokoyama S]]
-	~~[[Category: Centromere]]~~	+
-	~~[[Category: Dna binding protein]]~~	+
-	~~[[Category: Rsgi~~]]	+

OCA at 11:05, 4 August 2021

OCA — Wed, 04 Aug 2021 11:05:53 GMT

←Older revision		Revision as of 11:05, 4 August 2021
Line 3:		Line 3:
	<StructureSection load='1iuf' size='340' side='right'caption='[[1iuf]], [[NMR_Ensembles_of_Models \| 1 NMR models]]' scene=''>		<StructureSection load='1iuf' size='340' side='right'caption='[[1iuf]], [[NMR_Ensembles_of_Models \| 1 NMR models]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1iuf]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Cbs_356 Cbs 356]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1IUF OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1IUF FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1iuf]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Cbs_356 Cbs 356]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1IUF OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1IUF FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1iuf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1iuf OCA], [~~http~~://pdbe.org/1iuf PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=1iuf RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/1iuf PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=1iuf ProSAT], [~~http~~://www.topsan.org/Proteins/RSGI/1iuf TOPSAN]</span></td></tr>	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1iuf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1iuf OCA], [https://pdbe.org/1iuf PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1iuf RCSB], [https://www.ebi.ac.uk/pdbsum/1iuf PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1iuf ProSAT], [https://www.topsan.org/Proteins/RSGI/1iuf TOPSAN]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[~~http~~://www.uniprot.org/uniprot/ABP1_SCHPO ABP1_SCHPO]] Binds, preferentially, to the Maundrell ARS consensus sequence within ARS3002.	+	[[https://www.uniprot.org/uniprot/ABP1_SCHPO ABP1_SCHPO]] Binds, preferentially, to the Maundrell ARS consensus sequence within ARS3002.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]

OCA at 10:18, 30 October 2019

OCA — Wed, 30 Oct 2019 10:18:31 GMT

←Older revision		Revision as of 10:18, 30 October 2019
Line 1:		Line 1:

	==LOW RESOLUTION SOLUTION STRUCTURE OF THE TWO DNA-BINDING DOMAINS IN Schizosaccharomyces pombe ABP1 PROTEIN==		==LOW RESOLUTION SOLUTION STRUCTURE OF THE TWO DNA-BINDING DOMAINS IN Schizosaccharomyces pombe ABP1 PROTEIN==
-	<StructureSection load='1iuf' size='340' side='right' caption='[[1iuf]], [[NMR_Ensembles_of_Models \| 1 NMR models]]' scene=''>	+	<StructureSection load='1iuf' size='340' side='right'caption='[[1iuf]], [[NMR_Ensembles_of_Models \| 1 NMR models]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1iuf]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Cbs_356 Cbs 356]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1IUF OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1IUF FirstGlance]. <br>		<table><tr><td colspan='2'>[[1iuf]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Cbs_356 Cbs 356]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1IUF OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1IUF FirstGlance]. <br>
Line 32:		Line 32:
	</StructureSection>		</StructureSection>
	[[Category: Cbs 356]]		[[Category: Cbs 356]]
		+	[[Category: Large Structures]]
	[[Category: Iwahara, J]]		[[Category: Iwahara, J]]
	[[Category: Kigawa, T]]		[[Category: Kigawa, T]]

OCA at 09:03, 17 January 2018

OCA — Wed, 17 Jan 2018 09:03:25 GMT

←Older revision		Revision as of 09:03, 17 January 2018
Line 1:		Line 1:
		+
	==LOW RESOLUTION SOLUTION STRUCTURE OF THE TWO DNA-BINDING DOMAINS IN Schizosaccharomyces pombe ABP1 PROTEIN==		==LOW RESOLUTION SOLUTION STRUCTURE OF THE TWO DNA-BINDING DOMAINS IN Schizosaccharomyces pombe ABP1 PROTEIN==
	<StructureSection load='1iuf' size='340' side='right' caption='[[1iuf]], [[NMR_Ensembles_of_Models \| 1 NMR models]]' scene=''>		<StructureSection load='1iuf' size='340' side='right' caption='[[1iuf]], [[NMR_Ensembles_of_Models \| 1 NMR models]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1iuf]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Cbs_356 Cbs 356]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1IUF OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1IUF FirstGlance]. <br>		<table><tr><td colspan='2'>[[1iuf]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Cbs_356 Cbs 356]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1IUF OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1IUF FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1iuf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1iuf OCA], [http://pdbe.org/1iuf PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1iuf RCSB], [http://www.ebi.ac.uk/pdbsum/1iuf PDBsum], [http://www.topsan.org/Proteins/RSGI/1iuf TOPSAN]</span></td></tr>	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1iuf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1iuf OCA], [http://pdbe.org/1iuf PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1iuf RCSB], [http://www.ebi.ac.uk/pdbsum/1iuf PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1iuf ProSAT], [http://www.topsan.org/Proteins/RSGI/1iuf TOPSAN]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 11:		Line 12:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/iu/1iuf_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/iu/1iuf_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>

OCA at 19:03, 9 February 2016

OCA — Tue, 09 Feb 2016 19:03:16 GMT

←Older revision		Revision as of 19:03, 9 February 2016
Line 15:		Line 15:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1iuf ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 01:10, 11 September 2015

OCA — Fri, 11 Sep 2015 01:10:26 GMT

←Older revision		Revision as of 01:10, 11 September 2015
Line 2:		Line 2:
	<StructureSection load='1iuf' size='340' side='right' caption='[[1iuf]], [[NMR_Ensembles_of_Models \| 1 NMR models]]' scene=''>		<StructureSection load='1iuf' size='340' side='right' caption='[[1iuf]], [[NMR_Ensembles_of_Models \| 1 NMR models]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1iuf]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Schizosaccharomyces_pombe Schizosaccharomyces pombe~~]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1IUF OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1IUF FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1iuf]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Cbs_356 Cbs 356]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1IUF OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1IUF FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1iuf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1iuf OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1iuf RCSB], [http://www.ebi.ac.uk/pdbsum/1iuf PDBsum], [http://www.topsan.org/Proteins/RSGI/1iuf TOPSAN]</span></td></tr>	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1iuf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1iuf OCA], [http://pdbe.org/1iuf PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1iuf RCSB], [http://www.ebi.ac.uk/pdbsum/1iuf PDBsum], [http://www.topsan.org/Proteins/RSGI/1iuf TOPSAN]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 25:		Line 25:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 1iuf" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Schizosaccharomyces pombe~~]]	+	[[Category: Cbs 356]]
	[[Category: Iwahara, J]]		[[Category: Iwahara, J]]
	[[Category: Kigawa, T]]		[[Category: Kigawa, T]]

OCA at 08:53, 25 December 2014

OCA — Thu, 25 Dec 2014 08:53:07 GMT

←Older revision		Revision as of 08:53, 25 December 2014
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1iuf]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Schizosaccharomyces_pombe Schizosaccharomyces pombe]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1IUF OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1IUF FirstGlance]. <br>		<table><tr><td colspan='2'>[[1iuf]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Schizosaccharomyces_pombe Schizosaccharomyces pombe]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1IUF OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1IUF FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1iuf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1iuf OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1iuf RCSB], [http://www.ebi.ac.uk/pdbsum/1iuf PDBsum], [http://www.topsan.org/Proteins/RSGI/1iuf TOPSAN]</span></td></tr>	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1iuf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1iuf OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1iuf RCSB], [http://www.ebi.ac.uk/pdbsum/1iuf PDBsum], [http://www.topsan.org/Proteins/RSGI/1iuf TOPSAN]</span></td></tr>
-	<table>	+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/ABP1_SCHPO ABP1_SCHPO]] Binds, preferentially, to the Maundrell ARS consensus sequence within ARS3002.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 28:		Line 30:
	</StructureSection>		</StructureSection>
	[[Category: Schizosaccharomyces pombe]]		[[Category: Schizosaccharomyces pombe]]
-	[[Category: Iwahara, J.]]	+	[[Category: Iwahara, J]]
-	[[Category: Kigawa, T.]]	+	[[Category: Kigawa, T]]
-	[[Category: Kikuchi, J.]]	+	[[Category: Kikuchi, J]]
-	[[Category: Murakami, Y.]]	+	[[Category: Murakami, Y]]
-	[[Category: Okazaki, T.]]	+	[[Category: Okazaki, T]]
-	[[Category: ~~RSGI, RIKEN~~ Structural ~~Genomics/Proteomics Initiative.~~]]	+	[[Category: Structural genomic]]
-	[[Category: Yokoyama, S.]]	+	[[Category: Yokoyama, S]]
	[[Category: Centromere]]		[[Category: Centromere]]
	[[Category: Dna binding protein]]		[[Category: Dna binding protein]]
-	[[Category: Riken structural genomics/proteomics initiative]]
	[[Category: Rsgi]]		[[Category: Rsgi]]
-	[[Category: Structural genomic]]

OCA at 11:16, 28 September 2014

OCA — Sun, 28 Sep 2014 11:16:10 GMT

←Older revision		Revision as of 11:16, 28 September 2014
Line 1:		Line 1:
-	[[~~Image~~:1iuf.~~png\|left~~\|200px]]	+	==LOW RESOLUTION SOLUTION STRUCTURE OF THE TWO DNA-BINDING DOMAINS IN Schizosaccharomyces pombe ABP1 PROTEIN==
		+	<StructureSection load='1iuf' size='340' side='right' caption='[[1iuf]], [[NMR_Ensembles_of_Models \| 1 NMR models]]' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[1iuf]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Schizosaccharomyces_pombe Schizosaccharomyces pombe]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1IUF OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1IUF FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1iuf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1iuf OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1iuf RCSB], [http://www.ebi.ac.uk/pdbsum/1iuf PDBsum], [http://www.topsan.org/Proteins/RSGI/1iuf TOPSAN]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/iu/1iuf_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	We have solved the solution structure of the N-terminal region of the fission yeast centromere protein, Abp1, bound to a 21-base pair DNA fragment bearing its recognition site (Mw = 30 kDa). Although the two DNA-binding domains in the Abpl protein were defined well by a conventional NOE-based NMR methodology, the overall structure of the Abpl protein was poorly defined, due to the lack of interdomain distance restraints. Therefore, we additionally used residual dipolar couplings measured in a weakly aligned state, and rotational diffusion anisotropies. Neither the NH residual dipolar couplings nor the backbone 15N T1/T2 data were sufficient to determine the overall structure of the Abpl protein, due to spectral overlap. We used a combination of these two orientational restraints (residual dipolar coupling and rotational diffusion anisotropy), which significantly improved the convergence of the overall structures. The range of the observed T1/T2 ratios was wider (20-50 for the secondary structure regions of Abp 1) than the previously reported data for several globular proteins, indicating that the overall shape of the Abp1.DNA complex is ellipsoid. This extended form would facilitate the recognition of the two separate sites in the relatively long DNA sequence by the DNA-binding domains of Apb1.

-	~~{{STRUCTURE_1iuf\| PDB=1iuf \| SCENE= }}~~	+	Solution structure determination of the two DNA-binding domains in the Schizosaccharomyces pombe Abp1 protein by a combination of dipolar coupling and diffusion anisotropy restraints.,Kikuchi J, Iwahara J, Kigawa T, Murakami Y, Okazaki T, Yokoyama S J Biomol NMR. 2002 Apr;22(4):333-47. PMID:12018481<ref>PMID:12018481</ref>

-	~~===LOW RESOLUTION SOLUTION STRUCTURE OF THE TWO DNA-BINDING DOMAINS IN Schizosaccharomyces pombe ABP1 PROTEIN===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_12018481}}~~	+	== References ==
-		+	<references/>
-	~~==About this Structure==~~	+	__TOC__
-	~~[[1iuf]] is~~ a ~~1 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org/wiki/Schizosaccharomyces_pombe Schizosaccharomyces pombe]~~. ~~Full experimental information is available from [http:~~/~~/oca.weizmann.ac.il/oca-bin/ocashort?id=1IUF OCA].~~	+	</StructureSection>
-		+
-	==~~Reference~~==	+
-	<~~ref group="xtra">PMID:012018481<~~/~~ref~~><~~references group="xtra"~~/>	+
	[[Category: Schizosaccharomyces pombe]]		[[Category: Schizosaccharomyces pombe]]
	[[Category: Iwahara, J.]]		[[Category: Iwahara, J.]]

OCA: Protected "1iuf" [edit=sysop:move=sysop]

OCA — Wed, 28 Nov 2012 14:55:02 GMT

Protected "1iuf" [edit=sysop:move=sysop]

←Older revision

Revision as of 14:55, 28 November 2012

OCA at 14:55, 28 November 2012

OCA — Wed, 28 Nov 2012 14:55:01 GMT

←Older revision		Revision as of 14:55, 28 November 2012
Line 1:		Line 1:
-	{{Seed}}
	[[Image:1iuf.png\|left\|200px]]		[[Image:1iuf.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_1iuf", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_1iuf\| PDB=1iuf \| SCENE= }}		{{STRUCTURE_1iuf\| PDB=1iuf \| SCENE= }}

	===LOW RESOLUTION SOLUTION STRUCTURE OF THE TWO DNA-BINDING DOMAINS IN Schizosaccharomyces pombe ABP1 PROTEIN===		===LOW RESOLUTION SOLUTION STRUCTURE OF THE TWO DNA-BINDING DOMAINS IN Schizosaccharomyces pombe ABP1 PROTEIN===

-
-	<!--
-	The line below this paragraph, {{ABSTRACT_PUBMED_12018481}}, adds the Publication Abstract to the page
-	(as it appears on PubMed at http://www.pubmed.gov), where 12018481 is the PubMed ID number.
-	-->
	{{ABSTRACT_PUBMED_12018481}}		{{ABSTRACT_PUBMED_12018481}}

	==About this Structure==		==About this Structure==
-	~~1IUF~~ is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Schizosaccharomyces_pombe Schizosaccharomyces pombe]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1IUF OCA].	+	[[1iuf]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Schizosaccharomyces_pombe Schizosaccharomyces pombe]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1IUF OCA].

	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~12018481~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:012018481</ref><references group="xtra"/>
	[[Category: Schizosaccharomyces pombe]]		[[Category: Schizosaccharomyces pombe]]
	[[Category: Iwahara, J.]]		[[Category: Iwahara, J.]]
Line 33:		Line 21:
	[[Category: Yokoyama, S.]]		[[Category: Yokoyama, S.]]
	[[Category: Centromere]]		[[Category: Centromere]]
		+	[[Category: Dna binding protein]]
	[[Category: Riken structural genomics/proteomics initiative]]		[[Category: Riken structural genomics/proteomics initiative]]
	[[Category: Rsgi]]		[[Category: Rsgi]]
	[[Category: Structural genomic]]		[[Category: Structural genomic]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 12:03:32 2009''