1iz1 - Revision history

OCA at 07:13, 25 October 2023

OCA — Wed, 25 Oct 2023 07:13:07 GMT

←Older revision		Revision as of 07:13, 25 October 2023
Line 3:		Line 3:
	<StructureSection load='1iz1' size='340' side='right'caption='[[1iz1]], [[Resolution\|resolution]] 2.50Å' scene=''>		<StructureSection load='1iz1' size='340' side='right'caption='[[1iz1]], [[Resolution\|resolution]] 2.50Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1iz1]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Atcc_43291 Atcc 43291~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1IZ1 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1IZ1 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1iz1]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Cupriavidus_necator Cupriavidus necator]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1IZ1 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1IZ1 FirstGlance]. <br>
-	</td></tr><tr id='~~related~~'><td class="sblockLbl"><b>[[~~Related_structure~~\|~~Related~~:]]</b></td><td class="sblockDat">~~<div style='overflow: auto; max~~-~~height: 3em;'>~~[[~~1ixc~~\|~~1ixc~~]]~~</div>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.5Å</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1iz1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1iz1 OCA], [https://pdbe.org/1iz1 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1iz1 RCSB], [https://www.ebi.ac.uk/pdbsum/1iz1 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1iz1 ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1iz1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1iz1 OCA], [https://pdbe.org/1iz1 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1iz1 RCSB], [https://www.ebi.ac.uk/pdbsum/1iz1 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1iz1 ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/Q9WXC7_CUPNE Q9WXC7_CUPNE]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 26:		Line 28:
	</div>		</div>
	<div class="pdbe-citations 1iz1" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 1iz1" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[Transcriptional activator 3D structures\|Transcriptional activator 3D structures]]
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Atcc 43291~~]]	+	[[Category: Cupriavidus necator]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Miyashita, K]]	+	[[Category: Miyashita K]]
-	[[Category: Muraoka, S]]	+	[[Category: Muraoka S]]
-	[[Category: Ogawa, N]]	+	[[Category: Ogawa N]]
-	[[Category: Okumura, R]]	+	[[Category: Okumura R]]
-	[[Category: Senda, T]]	+	[[Category: Senda T]]
-	~~[[Category: Dna binding protein]]~~	+
-	~~[[Category: Long alpha helix connecting dna binding and regulatory domain~~]]	+

OCA at 07:15, 14 April 2021

OCA — Wed, 14 Apr 2021 07:15:15 GMT

←Older revision		Revision as of 07:15, 14 April 2021
Line 3:		Line 3:
	<StructureSection load='1iz1' size='340' side='right'caption='[[1iz1]], [[Resolution\|resolution]] 2.50Å' scene=''>		<StructureSection load='1iz1' size='340' side='right'caption='[[1iz1]], [[Resolution\|resolution]] 2.50Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1iz1]] is a 4 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Atcc_43291 Atcc 43291]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1IZ1 OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1IZ1 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1iz1]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Atcc_43291 Atcc 43291]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1IZ1 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1IZ1 FirstGlance]. <br>
-	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1ixc\|1ixc]]</td></tr>	+	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1ixc\|1ixc]]</div></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1iz1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1iz1 OCA], [~~http~~://pdbe.org/1iz1 PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=1iz1 RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/1iz1 PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=1iz1 ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1iz1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1iz1 OCA], [https://pdbe.org/1iz1 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1iz1 RCSB], [https://www.ebi.ac.uk/pdbsum/1iz1 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1iz1 ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==

OCA at 07:08, 10 July 2019

OCA — Wed, 10 Jul 2019 07:08:31 GMT

←Older revision		Revision as of 07:08, 10 July 2019
Line 1:		Line 1:

	==CRYSTAL STRUCTURE OF CBNR, A LYSR FAMILY TRANSCRIPTIONAL REGULATOR==		==CRYSTAL STRUCTURE OF CBNR, A LYSR FAMILY TRANSCRIPTIONAL REGULATOR==
-	<StructureSection load='1iz1' size='340' side='right' caption='[[1iz1]], [[Resolution\|resolution]] 2.50Å' scene=''>	+	<StructureSection load='1iz1' size='340' side='right'caption='[[1iz1]], [[Resolution\|resolution]] 2.50Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1iz1]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_43291 Atcc 43291]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1IZ1 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1IZ1 FirstGlance]. <br>		<table><tr><td colspan='2'>[[1iz1]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_43291 Atcc 43291]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1IZ1 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1IZ1 FirstGlance]. <br>
Line 11:		Line 11:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/iz/1iz1_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/iz/1iz1_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
Line 31:		Line 31:
	</StructureSection>		</StructureSection>
	[[Category: Atcc 43291]]		[[Category: Atcc 43291]]
		+	[[Category: Large Structures]]
	[[Category: Miyashita, K]]		[[Category: Miyashita, K]]
	[[Category: Muraoka, S]]		[[Category: Muraoka, S]]

OCA at 09:40, 4 October 2017

OCA — Wed, 04 Oct 2017 09:40:01 GMT

←Older revision		Revision as of 09:40, 4 October 2017
Line 1:		Line 1:
		+
	==CRYSTAL STRUCTURE OF CBNR, A LYSR FAMILY TRANSCRIPTIONAL REGULATOR==		==CRYSTAL STRUCTURE OF CBNR, A LYSR FAMILY TRANSCRIPTIONAL REGULATOR==
	<StructureSection load='1iz1' size='340' side='right' caption='[[1iz1]], [[Resolution\|resolution]] 2.50Å' scene=''>		<StructureSection load='1iz1' size='340' side='right' caption='[[1iz1]], [[Resolution\|resolution]] 2.50Å' scene=''>
Line 4:		Line 5:
	<table><tr><td colspan='2'>[[1iz1]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_43291 Atcc 43291]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1IZ1 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1IZ1 FirstGlance]. <br>		<table><tr><td colspan='2'>[[1iz1]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_43291 Atcc 43291]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1IZ1 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1IZ1 FirstGlance]. <br>
	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1ixc\|1ixc]]</td></tr>		</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1ixc\|1ixc]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1iz1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1iz1 OCA], [http://pdbe.org/1iz1 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1iz1 RCSB], [http://www.ebi.ac.uk/pdbsum/1iz1 PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1iz1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1iz1 OCA], [http://pdbe.org/1iz1 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1iz1 RCSB], [http://www.ebi.ac.uk/pdbsum/1iz1 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1iz1 ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 14:		Line 15:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1iz1 ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 22:12, 11 September 2015

OCA — Fri, 11 Sep 2015 22:12:05 GMT

←Older revision		Revision as of 22:12, 11 September 2015
Line 2:		Line 2:
	<StructureSection load='1iz1' size='340' side='right' caption='[[1iz1]], [[Resolution\|resolution]] 2.50Å' scene=''>		<StructureSection load='1iz1' size='340' side='right' caption='[[1iz1]], [[Resolution\|resolution]] 2.50Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1iz1]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Cupriavidus_necator Cupriavidus necator~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1IZ1 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1IZ1 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1iz1]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_43291 Atcc 43291]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1IZ1 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1IZ1 FirstGlance]. <br>
	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1ixc\|1ixc]]</td></tr>		</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1ixc\|1ixc]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1iz1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1iz1 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1iz1 RCSB], [http://www.ebi.ac.uk/pdbsum/1iz1 PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1iz1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1iz1 OCA], [http://pdbe.org/1iz1 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1iz1 RCSB], [http://www.ebi.ac.uk/pdbsum/1iz1 PDBsum]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 24:		Line 24:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 1iz1" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Cupriavidus necator~~]]	+	[[Category: Atcc 43291]]
	[[Category: Miyashita, K]]		[[Category: Miyashita, K]]
	[[Category: Muraoka, S]]		[[Category: Muraoka, S]]

OCA at 11:58, 2 January 2015

OCA — Fri, 02 Jan 2015 11:58:54 GMT

←Older revision		Revision as of 11:58, 2 January 2015
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1iz1]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Cupriavidus_necator Cupriavidus necator]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1IZ1 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1IZ1 FirstGlance]. <br>		<table><tr><td colspan='2'>[[1iz1]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Cupriavidus_necator Cupriavidus necator]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1IZ1 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1IZ1 FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1ixc\|1ixc]]</td></tr>	+	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1ixc\|1ixc]]</td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1iz1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1iz1 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1iz1 RCSB], [http://www.ebi.ac.uk/pdbsum/1iz1 PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1iz1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1iz1 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1iz1 RCSB], [http://www.ebi.ac.uk/pdbsum/1iz1 PDBsum]</span></td></tr>
-	<table>	+	</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 29:		Line 29:
	</StructureSection>		</StructureSection>
	[[Category: Cupriavidus necator]]		[[Category: Cupriavidus necator]]
-	[[Category: Miyashita, K.]]	+	[[Category: Miyashita, K]]
-	[[Category: Muraoka, S.]]	+	[[Category: Muraoka, S]]
-	[[Category: Ogawa, N.]]	+	[[Category: Ogawa, N]]
-	[[Category: Okumura, R.]]	+	[[Category: Okumura, R]]
-	[[Category: Senda, T.]]	+	[[Category: Senda, T]]
	[[Category: Dna binding protein]]		[[Category: Dna binding protein]]
	[[Category: Long alpha helix connecting dna binding and regulatory domain]]		[[Category: Long alpha helix connecting dna binding and regulatory domain]]

OCA at 10:19, 28 September 2014

OCA — Sun, 28 Sep 2014 10:19:13 GMT

←Older revision		Revision as of 10:19, 28 September 2014
Line 1:		Line 1:
-	[[~~Image:~~1iz1.~~png~~\|~~left~~\|200px]]	+	==CRYSTAL STRUCTURE OF CBNR, A LYSR FAMILY TRANSCRIPTIONAL REGULATOR==
		+	<StructureSection load='1iz1' size='340' side='right' caption='[[1iz1]], [[Resolution\|resolution]] 2.50Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[1iz1]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Cupriavidus_necator Cupriavidus necator]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1IZ1 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1IZ1 FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1ixc\|1ixc]]</td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1iz1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1iz1 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1iz1 RCSB], [http://www.ebi.ac.uk/pdbsum/1iz1 PDBsum]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/iz/1iz1_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	The LysR-type transcriptional regulator (LTTR) proteins are one of the most common transcriptional regulators in prokaryotes. Here we report the crystal structure of CbnR, which is one of the LTTRs derived from Ralstonia eutropha NH9. This is the first crystal structure of a full-length LTTR. CbnR was found to form a homo-tetramer, which seems to be a biologically active form. Surprisingly, the tetramer can be regarded as a dimer of dimers, whereby each dimer is composed of two subunits in different conformations. In the CbnR tetramer, the DNA-binding domains are located at the V-shaped bottom of the main body of the tetramer, and seem to be suitable to interact with a long stretch of the promoter DNA, which is approximately 60bp. Interaction between the four DNA-binding domains and the two binding sites on the target DNA is likely to bend the target DNA along the V-shaped bottom of the CbnR tetramer. The relaxation of the bent DNA, which occurs upon inducer binding to CbnR, seems to be associated with a quaternary structure change of the tetramer.

-	~~{{STRUCTURE_1iz1\| PDB=1iz1 \| SCENE= }}~~	+	Crystal structure of a full-length LysR-type transcriptional regulator, CbnR: unusual combination of two subunit forms and molecular bases for causing and changing DNA bend.,Muraoka S, Okumura R, Ogawa N, Nonaka T, Miyashita K, Senda T J Mol Biol. 2003 May 2;328(3):555-66. PMID:12706716<ref>PMID:12706716</ref>

-	~~===CRYSTAL STRUCTURE OF CBNR~~, ~~A LYSR FAMILY TRANSCRIPTIONAL REGULATOR===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_12706716}}~~	+	== References ==
-		+	<references/>
-	~~==About this Structure==~~	+	__TOC__
-	~~[[1iz1]] is~~ a ~~4 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org/wiki/Cupriavidus_necator Cupriavidus necator]~~. ~~Full crystallographic information is available from [http:~~/~~/oca.weizmann.ac.il/oca-bin/ocashort?id=1IZ1 OCA].~~	+	</StructureSection>
-		+
-	==~~Reference~~==	+
-	<~~ref group="xtra">PMID:012706716<~~/~~ref~~><~~references group="xtra"~~/>	+
	[[Category: Cupriavidus necator]]		[[Category: Cupriavidus necator]]
	[[Category: Miyashita, K.]]		[[Category: Miyashita, K.]]

OCA: Protected "1iz1" [edit=sysop:move=sysop]

OCA — Wed, 28 Nov 2012 14:48:30 GMT

Protected "1iz1" [edit=sysop:move=sysop]

←Older revision

Revision as of 14:48, 28 November 2012

OCA at 14:48, 28 November 2012

OCA — Wed, 28 Nov 2012 14:48:25 GMT

←Older revision		Revision as of 14:48, 28 November 2012
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-	{{Seed}}
	[[Image:1iz1.png\|left\|200px]]		[[Image:1iz1.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_1iz1", creates the "Structure Box" on the page.
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	{{STRUCTURE_1iz1\| PDB=1iz1 \| SCENE= }}		{{STRUCTURE_1iz1\| PDB=1iz1 \| SCENE= }}

	===CRYSTAL STRUCTURE OF CBNR, A LYSR FAMILY TRANSCRIPTIONAL REGULATOR===		===CRYSTAL STRUCTURE OF CBNR, A LYSR FAMILY TRANSCRIPTIONAL REGULATOR===

-
-	<!--
-	The line below this paragraph, {{ABSTRACT_PUBMED_12706716}}, adds the Publication Abstract to the page
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	{{ABSTRACT_PUBMED_12706716}}		{{ABSTRACT_PUBMED_12706716}}

	==About this Structure==		==About this Structure==
-	~~1IZ1~~ is a 4 ~~chains~~ structure ~~of sequences~~ from [http://en.wikipedia.org/wiki/Cupriavidus_necator Cupriavidus necator]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1IZ1 OCA].	+	[[1iz1]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Cupriavidus_necator Cupriavidus necator]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1IZ1 OCA].

	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~12706716~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:012706716</ref><references group="xtra"/>
	[[Category: Cupriavidus necator]]		[[Category: Cupriavidus necator]]
	[[Category: Miyashita, K.]]		[[Category: Miyashita, K.]]
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	[[Category: Okumura, R.]]		[[Category: Okumura, R.]]
	[[Category: Senda, T.]]		[[Category: Senda, T.]]
		+	[[Category: Dna binding protein]]
	[[Category: Long alpha helix connecting dna binding and regulatory domain]]		[[Category: Long alpha helix connecting dna binding and regulatory domain]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Feb 18 05:46:39 2009''

OCA at 03:46, 18 February 2009

OCA — Wed, 18 Feb 2009 03:46:41 GMT

←Older revision		Revision as of 03:46, 18 February 2009
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	==About this Structure==		==About this Structure==
-	1IZ1 is a ~~[[Single protein]]~~ structure of ~~sequence~~ from [http://en.wikipedia.org/wiki/Cupriavidus_necator Cupriavidus necator]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1IZ1 OCA].	+	1IZ1 is a 4 chains structure of sequences from [http://en.wikipedia.org/wiki/Cupriavidus_necator Cupriavidus necator]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1IZ1 OCA].

	==Reference==		==Reference==
-	Crystal structure of a full-length LysR-type transcriptional regulator, CbnR: unusual combination of two subunit forms and molecular bases for causing and changing DNA bend., Muraoka S, Okumura R, Ogawa N, Nonaka T, Miyashita K, Senda T, J Mol Biol. 2003 May 2;328(3):555-66. PMID:~~[http:~~//~~www.ncbi.nlm.nih.gov/pubmed/12706716 12706716]~~	+	<ref group="xtra">PMID:12706716</ref><references group="xtra"/>
	[[Category: Cupriavidus necator]]		[[Category: Cupriavidus necator]]
-	[[Category: Single protein]]
	[[Category: Miyashita, K.]]		[[Category: Miyashita, K.]]
	[[Category: Muraoka, S.]]		[[Category: Muraoka, S.]]
Line 33:		Line 32:
	[[Category: Long alpha helix connecting dna binding and regulatory domain]]		[[Category: Long alpha helix connecting dna binding and regulatory domain]]

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on ~~Tue Jul 1 14~~:15:~~03 2008~~''	+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Feb 18 05:46:39 2009''