1j0p - Revision history

OCA at 07:13, 25 October 2023

OCA — Wed, 25 Oct 2023 07:13:51 GMT

←Older revision		Revision as of 07:13, 25 October 2023
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	<StructureSection load='1j0p' size='340' side='right'caption='[[1j0p]], [[Resolution\|resolution]] 0.91Å' scene=''>		<StructureSection load='1j0p' size='340' side='right'caption='[[1j0p]], [[Resolution\|resolution]] 0.91Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1j0p]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Atcc_29579 Atcc 29579~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1J0P OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1J0P FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1j0p]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Desulfovibrio_vulgaris Desulfovibrio vulgaris]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1J0P OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1J0P FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EOH:ETHANOL'>EOH</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene~~></td></tr>~~	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 0.91Å</td></tr>
-	~~<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[2cdv\|2cdv]], [[1j0o\|1j0o]]</div~~></td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EOH:ETHANOL'>EOH</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1j0p FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1j0p OCA], [https://pdbe.org/1j0p PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1j0p RCSB], [https://www.ebi.ac.uk/pdbsum/1j0p PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1j0p ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1j0p FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1j0p OCA], [https://pdbe.org/1j0p PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1j0p RCSB], [https://www.ebi.ac.uk/pdbsum/1j0p PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1j0p ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[https://www.uniprot.org/uniprot/CYC3_DESVM CYC3_DESVM]] Participates in sulfate respiration coupled with phosphorylation by transferring electrons from the enzyme dehydrogenase to ferredoxin.	+	[https://www.uniprot.org/uniprot/CYC3_DESVM CYC3_DESVM] Participates in sulfate respiration coupled with phosphorylation by transferring electrons from the enzyme dehydrogenase to ferredoxin.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 36:		Line 36:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Atcc 29579~~]]	+	[[Category: Desulfovibrio vulgaris]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Akutsu, H]]	+	[[Category: Akutsu H]]
-	[[Category: Cusanvich~~, M A~~]]	+	[[Category: Cusanvich MA]]
-	[[Category: Higuchi, Y]]	+	[[Category: Higuchi Y]]
-	[[Category: Kumagai, J]]	+	[[Category: Kumagai J]]
-	[[Category: Ogata, H]]	+	[[Category: Ogata H]]
-	[[Category: Ohmura, T]]	+	[[Category: Ohmura T]]
-	[[Category: Ozawa, K]]	+	[[Category: Ozawa K]]
-	[[Category: Tomimoto, Y]]	+	[[Category: Tomimoto Y]]
-	[[Category: Yasukawa, F]]	+	[[Category: Yasukawa F]]
-	~~[[Category: Electron transport]]~~	+
-	~~[[Category: High resolution x-ray structure]]~~	+
-	~~[[Category: Tetraheme cytochrome c3]]~~	+
-	~~[[Category: Y43l mutant~~]]	+

OCA at 11:08, 4 August 2021

OCA — Wed, 04 Aug 2021 11:08:50 GMT

←Older revision		Revision as of 11:08, 4 August 2021
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	<StructureSection load='1j0p' size='340' side='right'caption='[[1j0p]], [[Resolution\|resolution]] 0.91Å' scene=''>		<StructureSection load='1j0p' size='340' side='right'caption='[[1j0p]], [[Resolution\|resolution]] 0.91Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1j0p]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Atcc_29579 Atcc 29579]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1J0P OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1J0P FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1j0p]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Atcc_29579 Atcc 29579]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1J0P OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1J0P FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=EOH:ETHANOL'>EOH</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EOH:ETHANOL'>EOH</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2cdv\|2cdv]], [[1j0o\|1j0o]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[2cdv\|2cdv]], [[1j0o\|1j0o]]</div></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1j0p FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1j0p OCA], [~~http~~://pdbe.org/1j0p PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=1j0p RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/1j0p PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=1j0p ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1j0p FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1j0p OCA], [https://pdbe.org/1j0p PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1j0p RCSB], [https://www.ebi.ac.uk/pdbsum/1j0p PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1j0p ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[~~http~~://www.uniprot.org/uniprot/CYC3_DESVM CYC3_DESVM]] Participates in sulfate respiration coupled with phosphorylation by transferring electrons from the enzyme dehydrogenase to ferredoxin.	+	[[https://www.uniprot.org/uniprot/CYC3_DESVM CYC3_DESVM]] Participates in sulfate respiration coupled with phosphorylation by transferring electrons from the enzyme dehydrogenase to ferredoxin.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]

OCA at 06:52, 10 July 2019

OCA — Wed, 10 Jul 2019 06:52:39 GMT

←Older revision		Revision as of 06:52, 10 July 2019
Line 1:		Line 1:

	==Three dimensional Structure of the Y43L mutant of Tetraheme Cytochrome c3 from Desulfovibrio vulgaris Miyazaki F==		==Three dimensional Structure of the Y43L mutant of Tetraheme Cytochrome c3 from Desulfovibrio vulgaris Miyazaki F==
-	<StructureSection load='1j0p' size='340' side='right' caption='[[1j0p]], [[Resolution\|resolution]] 0.91Å' scene=''>	+	<StructureSection load='1j0p' size='340' side='right'caption='[[1j0p]], [[Resolution\|resolution]] 0.91Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1j0p]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_29579 Atcc 29579]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1J0P OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1J0P FirstGlance]. <br>		<table><tr><td colspan='2'>[[1j0p]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_29579 Atcc 29579]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1J0P OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1J0P FirstGlance]. <br>
Line 14:		Line 14:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/j0/1j0p_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/j0/1j0p_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
Line 31:		Line 31:

	==See Also==		==See Also==
-	*[[Cytochrome c\|Cytochrome c]]	+	*[[Cytochrome C 3D structures\|Cytochrome C 3D structures]]
	== References ==		== References ==
	<references/>		<references/>
Line 37:		Line 37:
	</StructureSection>		</StructureSection>
	[[Category: Atcc 29579]]		[[Category: Atcc 29579]]
		+	[[Category: Large Structures]]
	[[Category: Akutsu, H]]		[[Category: Akutsu, H]]
	[[Category: Cusanvich, M A]]		[[Category: Cusanvich, M A]]

OCA at 09:43, 4 October 2017

OCA — Wed, 04 Oct 2017 09:43:10 GMT

←Older revision		Revision as of 09:43, 4 October 2017
Line 1:		Line 1:
		+
	==Three dimensional Structure of the Y43L mutant of Tetraheme Cytochrome c3 from Desulfovibrio vulgaris Miyazaki F==		==Three dimensional Structure of the Y43L mutant of Tetraheme Cytochrome c3 from Desulfovibrio vulgaris Miyazaki F==
	<StructureSection load='1j0p' size='340' side='right' caption='[[1j0p]], [[Resolution\|resolution]] 0.91Å' scene=''>		<StructureSection load='1j0p' size='340' side='right' caption='[[1j0p]], [[Resolution\|resolution]] 0.91Å' scene=''>
Line 5:		Line 6:
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=EOH:ETHANOL'>EOH</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=EOH:ETHANOL'>EOH</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2cdv\|2cdv]], [[1j0o\|1j0o]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2cdv\|2cdv]], [[1j0o\|1j0o]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1j0p FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1j0p OCA], [http://pdbe.org/1j0p PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1j0p RCSB], [http://www.ebi.ac.uk/pdbsum/1j0p PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1j0p FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1j0p OCA], [http://pdbe.org/1j0p PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1j0p RCSB], [http://www.ebi.ac.uk/pdbsum/1j0p PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1j0p ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 17:		Line 18:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1j0p ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 14:18, 11 September 2015

OCA — Fri, 11 Sep 2015 14:18:38 GMT

←Older revision		Revision as of 14:18, 11 September 2015
Line 2:		Line 2:
	<StructureSection load='1j0p' size='340' side='right' caption='[[1j0p]], [[Resolution\|resolution]] 0.91Å' scene=''>		<StructureSection load='1j0p' size='340' side='right' caption='[[1j0p]], [[Resolution\|resolution]] 0.91Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1j0p]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Desulfovibrio_vulgaris Desulfovibrio vulgaris~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1J0P OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1J0P FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1j0p]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_29579 Atcc 29579]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1J0P OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1J0P FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=EOH:ETHANOL'>EOH</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=EOH:ETHANOL'>EOH</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2cdv\|2cdv]], [[1j0o\|1j0o]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2cdv\|2cdv]], [[1j0o\|1j0o]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1j0p FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1j0p OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1j0p RCSB], [http://www.ebi.ac.uk/pdbsum/1j0p PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1j0p FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1j0p OCA], [http://pdbe.org/1j0p PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1j0p RCSB], [http://www.ebi.ac.uk/pdbsum/1j0p PDBsum]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 27:		Line 27:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 1j0p" style="background-color:#fffaf0;"></div>

	==See Also==		==See Also==
Line 34:		Line 35:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Desulfovibrio vulgaris~~]]	+	[[Category: Atcc 29579]]
	[[Category: Akutsu, H]]		[[Category: Akutsu, H]]
	[[Category: Cusanvich, M A]]		[[Category: Cusanvich, M A]]

OCA at 17:36, 25 December 2014

OCA — Thu, 25 Dec 2014 17:36:34 GMT

←Older revision		Revision as of 17:36, 25 December 2014
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1j0p]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Desulfovibrio_vulgaris Desulfovibrio vulgaris]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1J0P OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1J0P FirstGlance]. <br>		<table><tr><td colspan='2'>[[1j0p]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Desulfovibrio_vulgaris Desulfovibrio vulgaris]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1J0P OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1J0P FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=EOH:ETHANOL'>EOH</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=EOH:ETHANOL'>EOH</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2cdv\|2cdv]], [[1j0o\|1j0o]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2cdv\|2cdv]], [[1j0o\|1j0o]]</td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1j0p FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1j0p OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1j0p RCSB], [http://www.ebi.ac.uk/pdbsum/1j0p PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1j0p FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1j0p OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1j0p RCSB], [http://www.ebi.ac.uk/pdbsum/1j0p PDBsum]</span></td></tr>
-	<table>	+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/CYC3_DESVM CYC3_DESVM]] Participates in sulfate respiration coupled with phosphorylation by transferring electrons from the enzyme dehydrogenase to ferredoxin.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 33:		Line 35:
	</StructureSection>		</StructureSection>
	[[Category: Desulfovibrio vulgaris]]		[[Category: Desulfovibrio vulgaris]]
-	[[Category: Akutsu, H.]]	+	[[Category: Akutsu, H]]
-	[[Category: Cusanvich, M A.]]	+	[[Category: Cusanvich, M A]]
-	[[Category: Higuchi, Y.]]	+	[[Category: Higuchi, Y]]
-	[[Category: Kumagai, J.]]	+	[[Category: Kumagai, J]]
-	[[Category: Ogata, H.]]	+	[[Category: Ogata, H]]
-	[[Category: Ohmura, T.]]	+	[[Category: Ohmura, T]]
-	[[Category: Ozawa, K.]]	+	[[Category: Ozawa, K]]
-	[[Category: Tomimoto, Y.]]	+	[[Category: Tomimoto, Y]]
-	[[Category: Yasukawa, F.]]	+	[[Category: Yasukawa, F]]
	[[Category: Electron transport]]		[[Category: Electron transport]]
	[[Category: High resolution x-ray structure]]		[[Category: High resolution x-ray structure]]
	[[Category: Tetraheme cytochrome c3]]		[[Category: Tetraheme cytochrome c3]]
	[[Category: Y43l mutant]]		[[Category: Y43l mutant]]

OCA at 12:24, 28 September 2014

OCA — Sun, 28 Sep 2014 12:24:43 GMT

←Older revision		Revision as of 12:24, 28 September 2014
Line 1:		Line 1:
-	[[~~Image:~~1j0p.~~png~~\|~~left~~\|200px]]	+	==Three dimensional Structure of the Y43L mutant of Tetraheme Cytochrome c3 from Desulfovibrio vulgaris Miyazaki F==
		+	<StructureSection load='1j0p' size='340' side='right' caption='[[1j0p]], [[Resolution\|resolution]] 0.91Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[1j0p]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Desulfovibrio_vulgaris Desulfovibrio vulgaris]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1J0P OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1J0P FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=EOH:ETHANOL'>EOH</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene><br>
		+	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2cdv\|2cdv]], [[1j0o\|1j0o]]</td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1j0p FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1j0p OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1j0p RCSB], [http://www.ebi.ac.uk/pdbsum/1j0p PDBsum]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/j0/1j0p_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Tyrosine 43 is positioned parallel to the fifth heme axial ligand, His34, of heme 1 in the tetraheme cytochrome c(3). The replacement of tyrosine with leucine increased the redox potential of heme 1 by 44 and 35 mV at the first and last reduction steps, respectively; its effects on the other hemes are small. In contrast, the Y43F mutation hardly changed the potentials. It shows that the aromatic ring at this position contributes to lowering the redox potential of heme 1 locally, although this cannot be the major contribution to the extremely low redox potentials of cytochrome c(3). Furthermore, temperature-dependent line-width broadening in partially reduced samples established that the aromatic ring at position 43 participates in the control of the kinetics of intramolecular electron transfer. The rate of reduction of Y43L cytochrome c(3) by 5-deazariboflavin semiquinone under partially reduced conditions was significantly different from that of the wild type in the last stage of the reduction, supporting the involvement of Tyr43 in regulation of reduction kinetics. The mutation of Y43L, however, did not induce a significant change in the crystal structure.

-	~~{{STRUCTURE_1j0p\| PDB=1j0p \| SCENE= }}~~	+	Role of the aromatic ring of Tyr43 in tetraheme cytochrome c(3) from Desulfovibrio vulgaris Miyazaki F.,Ozawa K, Takayama Y, Yasukawa F, Ohmura T, Cusanovich MA, Tomimoto Y, Ogata H, Higuchi Y, Akutsu H Biophys J. 2003 Nov;85(5):3367-74. PMID:14581238<ref>PMID:14581238</ref>

-	~~===Three dimensional Structure~~ of the ~~Y43L mutant of Tetraheme Cytochrome c3 from Desulfovibrio vulgaris Miyazaki F===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_14581238}}~~	+
-		+
-	~~==About this Structure==~~	+
-	~~[[1j0p]] is a 1 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org/wiki/Desulfovibrio_vulgaris Desulfovibrio vulgaris]~~. ~~Full crystallographic information is available from [http:~~/~~/oca.weizmann.ac.il/oca-bin/ocashort?id=1J0P OCA].~~	+

	==See Also==		==See Also==
	*[[Cytochrome c\|Cytochrome c]]		*[[Cytochrome c\|Cytochrome c]]
-		+	== References ==
-	==~~Reference~~==	+	<references/>
-	<~~ref group="xtra">PMID:014581238<~~/~~ref~~><~~ref group="xtra">PMID:018754631</ref><references group="xtra"~~/>	+	__TOC__
		+	</StructureSection>
	[[Category: Desulfovibrio vulgaris]]		[[Category: Desulfovibrio vulgaris]]
	[[Category: Akutsu, H.]]		[[Category: Akutsu, H.]]

OCA at 19:31, 20 October 2012

OCA — Sat, 20 Oct 2012 19:31:57 GMT

←Older revision		Revision as of 19:31, 20 October 2012
Line 8:		Line 8:

	==About this Structure==		==About this Structure==
-	[[1j0p]] is a 1 chain structure ~~of [[Cytochrome c]]~~ with sequence from [http://en.wikipedia.org/wiki/Desulfovibrio_vulgaris Desulfovibrio vulgaris]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1J0P OCA].	+	[[1j0p]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Desulfovibrio_vulgaris Desulfovibrio vulgaris]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1J0P OCA].

	==See Also==		==See Also==

OCA: Protected "1j0p" [edit=sysop:move=sysop]

OCA — Fri, 27 Jul 2012 07:39:37 GMT

Protected "1j0p" [edit=sysop:move=sysop]

←Older revision

Revision as of 07:39, 27 July 2012

OCA at 07:39, 27 July 2012

OCA — Fri, 27 Jul 2012 07:39:36 GMT

←Older revision		Revision as of 07:39, 27 July 2012
Line 1:		Line 1:
-	{{Seed}}
	[[Image:1j0p.png\|left\|200px]]		[[Image:1j0p.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_1j0p", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_1j0p\| PDB=1j0p \| SCENE= }}		{{STRUCTURE_1j0p\| PDB=1j0p \| SCENE= }}

	===Three dimensional Structure of the Y43L mutant of Tetraheme Cytochrome c3 from Desulfovibrio vulgaris Miyazaki F===		===Three dimensional Structure of the Y43L mutant of Tetraheme Cytochrome c3 from Desulfovibrio vulgaris Miyazaki F===

-
-	<!--
-	The line below this paragraph, {{ABSTRACT_PUBMED_14581238}}, adds the Publication Abstract to the page
-	(as it appears on PubMed at http://www.pubmed.gov), where 14581238 is the PubMed ID number.
-	-->
	{{ABSTRACT_PUBMED_14581238}}		{{ABSTRACT_PUBMED_14581238}}

	==About this Structure==		==About this Structure==
-	~~1J0P~~ is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Desulfovibrio_vulgaris Desulfovibrio vulgaris]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1J0P OCA].	+	[[1j0p]] is a 1 chain structure of [[Cytochrome c]] with sequence from [http://en.wikipedia.org/wiki/Desulfovibrio_vulgaris Desulfovibrio vulgaris]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1J0P OCA].
		+
		+	==See Also==
		+	*[[Cytochrome c\|Cytochrome c]]

	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~14581238~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:014581238</ref><ref group="xtra">PMID:018754631</ref><references group="xtra"/>
	[[Category: Desulfovibrio vulgaris]]		[[Category: Desulfovibrio vulgaris]]
	[[Category: Akutsu, H.]]		[[Category: Akutsu, H.]]
Line 34:		Line 25:
	[[Category: Tomimoto, Y.]]		[[Category: Tomimoto, Y.]]
	[[Category: Yasukawa, F.]]		[[Category: Yasukawa, F.]]
		+	[[Category: Electron transport]]
	[[Category: High resolution x-ray structure]]		[[Category: High resolution x-ray structure]]
	[[Category: Tetraheme cytochrome c3]]		[[Category: Tetraheme cytochrome c3]]
	[[Category: Y43l mutant]]		[[Category: Y43l mutant]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Feb 18 00:23:58 2009''