1jcd - Revision history

OCA at 08:38, 16 August 2023

OCA — Wed, 16 Aug 2023 08:38:55 GMT

←Older revision		Revision as of 08:38, 16 August 2023
Line 3:		Line 3:
	<StructureSection load='1jcd' size='340' side='right'caption='[[1jcd]], [[Resolution\|resolution]] 1.30Å' scene=''>		<StructureSection load='1jcd' size='340' side='right'caption='[[1jcd]], [[Resolution\|resolution]] 1.30Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1jcd]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/~~"bacillus_coli"_migula_1895 "bacillus~~ coli~~" migula 1895~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1JCD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1JCD FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1jcd]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1JCD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1JCD FirstGlance]. <br>
-	</td></tr><tr id='~~related~~'><td class="sblockLbl"><b>[[~~Related_structure~~\|~~Related~~:]]</b></td><td class="sblockDat">~~<div style='overflow: auto; max~~-~~height: 3em;'>[[1eq7\|1eq7]]~~, [[~~1jcb~~\|~~1jcb~~]]~~, [[1jcc\|1jcc]]</div>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.3Å</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1jcd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1jcd OCA], [https://pdbe.org/1jcd PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1jcd RCSB], [https://www.ebi.ac.uk/pdbsum/1jcd PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1jcd ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1jcd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1jcd OCA], [https://pdbe.org/1jcd PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1jcd RCSB], [https://www.ebi.ac.uk/pdbsum/1jcd PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1jcd ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[https://www.uniprot.org/uniprot/LPP_ECOLI LPP_ECOLI]] Interacts with the peptidoglycan both covalently and noncovalently. This interaction contributes to the maintenance of the structural and functional integrity of the cell envelope.	+	[https://www.uniprot.org/uniprot/LPP_ECOLI LPP_ECOLI] Interacts with the peptidoglycan both covalently and noncovalently. This interaction contributes to the maintenance of the structural and functional integrity of the cell envelope.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 32:		Line 32:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Bacillus~~ coli ~~migula 1895~~]]	+	[[Category: Escherichia coli]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Liu, J]]	+	[[Category: Liu J]]
-	[[Category: Lu, M]]	+	[[Category: Lu M]]
-	~~[[Category: Alanine-zipper]]~~	+
-	~~[[Category: Coiled coil]]~~	+
-	~~[[Category: Helix capping]]~~	+
-	~~[[Category: Lipoprotein]]~~	+
-	~~[[Category: Membrane protein]]~~	+
-	~~[[Category: Protein folding~~]]	+

OCA at 07:18, 14 April 2021

OCA — Wed, 14 Apr 2021 07:18:03 GMT

←Older revision		Revision as of 07:18, 14 April 2021
Line 3:		Line 3:
	<StructureSection load='1jcd' size='340' side='right'caption='[[1jcd]], [[Resolution\|resolution]] 1.30Å' scene=''>		<StructureSection load='1jcd' size='340' side='right'caption='[[1jcd]], [[Resolution\|resolution]] 1.30Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1jcd]] is a 3 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/"bacillus_coli"_migula_1895 "bacillus coli" migula 1895]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1JCD OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1JCD FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1jcd]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/"bacillus_coli"_migula_1895 "bacillus coli" migula 1895]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1JCD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1JCD FirstGlance]. <br>
-	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1eq7\|1eq7]], [[1jcb\|1jcb]], [[1jcc\|1jcc]]</td></tr>	+	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1eq7\|1eq7]], [[1jcb\|1jcb]], [[1jcc\|1jcc]]</div></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1jcd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1jcd OCA], [~~http~~://pdbe.org/1jcd PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=1jcd RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/1jcd PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=1jcd ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1jcd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1jcd OCA], [https://pdbe.org/1jcd PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1jcd RCSB], [https://www.ebi.ac.uk/pdbsum/1jcd PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1jcd ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[~~http~~://www.uniprot.org/uniprot/LPP_ECOLI LPP_ECOLI]] Interacts with the peptidoglycan both covalently and noncovalently. This interaction contributes to the maintenance of the structural and functional integrity of the cell envelope.	+	[[https://www.uniprot.org/uniprot/LPP_ECOLI LPP_ECOLI]] Interacts with the peptidoglycan both covalently and noncovalently. This interaction contributes to the maintenance of the structural and functional integrity of the cell envelope.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]

OCA at 06:56, 10 July 2019

OCA — Wed, 10 Jul 2019 06:56:27 GMT

←Older revision		Revision as of 06:56, 10 July 2019
Line 1:		Line 1:

	==Crystal Structure of a Novel Alanine-Zipper Trimer at 1.3 A Resolution, I6A,L9A,V13A,L16A,V20A,L23A,V27A,M30A,V34A,L48A,M51A mutations==		==Crystal Structure of a Novel Alanine-Zipper Trimer at 1.3 A Resolution, I6A,L9A,V13A,L16A,V20A,L23A,V27A,M30A,V34A,L48A,M51A mutations==
-	<StructureSection load='1jcd' size='340' side='right' caption='[[1jcd]], [[Resolution\|resolution]] 1.30Å' scene=''>	+	<StructureSection load='1jcd' size='340' side='right'caption='[[1jcd]], [[Resolution\|resolution]] 1.30Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1jcd]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_coli"_migula_1895 "bacillus coli" migula 1895]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1JCD OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1JCD FirstGlance]. <br>		<table><tr><td colspan='2'>[[1jcd]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_coli"_migula_1895 "bacillus coli" migula 1895]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1JCD OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1JCD FirstGlance]. <br>
Line 13:		Line 13:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/jc/1jcd_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/jc/1jcd_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
Line 33:		Line 33:
	</StructureSection>		</StructureSection>
	[[Category: Bacillus coli migula 1895]]		[[Category: Bacillus coli migula 1895]]
		+	[[Category: Large Structures]]
	[[Category: Liu, J]]		[[Category: Liu, J]]
	[[Category: Lu, M]]		[[Category: Lu, M]]

OCA at 09:47, 4 October 2017

OCA — Wed, 04 Oct 2017 09:47:29 GMT

←Older revision		Revision as of 09:47, 4 October 2017
Line 1:		Line 1:
		+
	==Crystal Structure of a Novel Alanine-Zipper Trimer at 1.3 A Resolution, I6A,L9A,V13A,L16A,V20A,L23A,V27A,M30A,V34A,L48A,M51A mutations==		==Crystal Structure of a Novel Alanine-Zipper Trimer at 1.3 A Resolution, I6A,L9A,V13A,L16A,V20A,L23A,V27A,M30A,V34A,L48A,M51A mutations==
	<StructureSection load='1jcd' size='340' side='right' caption='[[1jcd]], [[Resolution\|resolution]] 1.30Å' scene=''>		<StructureSection load='1jcd' size='340' side='right' caption='[[1jcd]], [[Resolution\|resolution]] 1.30Å' scene=''>
Line 4:		Line 5:
	<table><tr><td colspan='2'>[[1jcd]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_coli"_migula_1895 "bacillus coli" migula 1895]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1JCD OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1JCD FirstGlance]. <br>		<table><tr><td colspan='2'>[[1jcd]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_coli"_migula_1895 "bacillus coli" migula 1895]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1JCD OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1JCD FirstGlance]. <br>
	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1eq7\|1eq7]], [[1jcb\|1jcb]], [[1jcc\|1jcc]]</td></tr>		</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1eq7\|1eq7]], [[1jcb\|1jcb]], [[1jcc\|1jcc]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1jcd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1jcd OCA], [http://pdbe.org/1jcd PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1jcd RCSB], [http://www.ebi.ac.uk/pdbsum/1jcd PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1jcd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1jcd OCA], [http://pdbe.org/1jcd PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1jcd RCSB], [http://www.ebi.ac.uk/pdbsum/1jcd PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1jcd ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 16:		Line 17:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1jcd ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
Line 35:		Line 36:
	[[Category: Lu, M]]		[[Category: Lu, M]]
	[[Category: Alanine-zipper]]		[[Category: Alanine-zipper]]
		+	[[Category: Coiled coil]]
	[[Category: Helix capping]]		[[Category: Helix capping]]
	[[Category: Lipoprotein]]		[[Category: Lipoprotein]]
	[[Category: Membrane protein]]		[[Category: Membrane protein]]
	[[Category: Protein folding]]		[[Category: Protein folding]]

OCA at 11:15, 11 September 2015

OCA — Fri, 11 Sep 2015 11:15:26 GMT

←Older revision		Revision as of 11:15, 11 September 2015
Line 2:		Line 2:
	<StructureSection load='1jcd' size='340' side='right' caption='[[1jcd]], [[Resolution\|resolution]] 1.30Å' scene=''>		<StructureSection load='1jcd' size='340' side='right' caption='[[1jcd]], [[Resolution\|resolution]] 1.30Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1jcd]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Escherichia_coli Escherichia~~ coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1JCD OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1JCD FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1jcd]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_coli"_migula_1895 "bacillus coli" migula 1895]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1JCD OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1JCD FirstGlance]. <br>
	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1eq7\|1eq7]], [[1jcb\|1jcb]], [[1jcc\|1jcc]]</td></tr>		</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1eq7\|1eq7]], [[1jcb\|1jcb]], [[1jcc\|1jcc]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1jcd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1jcd OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1jcd RCSB], [http://www.ebi.ac.uk/pdbsum/1jcd PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1jcd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1jcd OCA], [http://pdbe.org/1jcd PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1jcd RCSB], [http://www.ebi.ac.uk/pdbsum/1jcd PDBsum]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 26:		Line 26:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 1jcd" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Escherichia~~ coli]]	+	[[Category: Bacillus coli migula 1895]]
	[[Category: Liu, J]]		[[Category: Liu, J]]
	[[Category: Lu, M]]		[[Category: Lu, M]]

OCA at 15:42, 25 December 2014

OCA — Thu, 25 Dec 2014 15:42:23 GMT

←Older revision		Revision as of 15:42, 25 December 2014
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1jcd]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1JCD OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1JCD FirstGlance]. <br>		<table><tr><td colspan='2'>[[1jcd]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1JCD OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1JCD FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1eq7\|1eq7]], [[1jcb\|1jcb]], [[1jcc\|1jcc]]</td></tr>	+	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1eq7\|1eq7]], [[1jcb\|1jcb]], [[1jcc\|1jcc]]</td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1jcd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1jcd OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1jcd RCSB], [http://www.ebi.ac.uk/pdbsum/1jcd PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1jcd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1jcd OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1jcd RCSB], [http://www.ebi.ac.uk/pdbsum/1jcd PDBsum]</span></td></tr>
-	<table>	+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/LPP_ECOLI LPP_ECOLI]] Interacts with the peptidoglycan both covalently and noncovalently. This interaction contributes to the maintenance of the structural and functional integrity of the cell envelope.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 29:		Line 31:
	</StructureSection>		</StructureSection>
	[[Category: Escherichia coli]]		[[Category: Escherichia coli]]
-	[[Category: Liu, J.]]	+	[[Category: Liu, J]]
-	[[Category: Lu, M.]]	+	[[Category: Lu, M]]
	[[Category: Alanine-zipper]]		[[Category: Alanine-zipper]]
	[[Category: Helix capping]]		[[Category: Helix capping]]

OCA at 09:14, 28 September 2014

OCA — Sun, 28 Sep 2014 09:14:48 GMT

←Older revision		Revision as of 09:14, 28 September 2014
Line 1:		Line 1:
-	[[~~Image:~~1jcd.~~png~~\|~~left~~\|200px]]	+	==Crystal Structure of a Novel Alanine-Zipper Trimer at 1.3 A Resolution, I6A,L9A,V13A,L16A,V20A,L23A,V27A,M30A,V34A,L48A,M51A mutations==
		+	<StructureSection load='1jcd' size='340' side='right' caption='[[1jcd]], [[Resolution\|resolution]] 1.30Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[1jcd]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1JCD OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1JCD FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1eq7\|1eq7]], [[1jcb\|1jcb]], [[1jcc\|1jcc]]</td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1jcd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1jcd OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1jcd RCSB], [http://www.ebi.ac.uk/pdbsum/1jcd PDBsum]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/jc/1jcd_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	A major challenge in protein folding is to identify and quantify specific structural determinants that allow native proteins to acquire their unique folded structures. Here we report the engineering of a 52-residue protein (Ala-14) that contains exclusively alanine residues at the hydrophobic a and d positions of a natural heptad-repeat sequence. Ala-14 is unfolded under normal solution conditions yet forms a parallel three-stranded alpha-helical coiled coil in crystals. Ala-14 trimers in the solid state associate with each other through the pairing of polar side chains and formation of an extended network of water-mediated hydrogen bonds. In contrast to the classical view that local intramolecular tertiary interactions dictate the three-dimensional structure of small single-domain proteins, Ala-14 shows that long range intermolecular interactions can be essential in determining the metastable alanine-zipper structure. A similar interplay between short range local and longer range global forces may underlie the conformational properties of the growing class of natively unstructured proteins in biological processes.

-	~~{{STRUCTURE_1jcd\| PDB=1jcd \| SCENE= }}~~	+	An alanine-zipper structure determined by long range intermolecular interactions.,Liu J, Lu M J Biol Chem. 2002 Dec 13;277(50):48708-13. Epub 2002 Oct 3. PMID:12368282<ref>PMID:12368282</ref>

-	~~===Crystal Structure of a Novel Alanine-Zipper Trimer at 1.3 A Resolution~~, ~~I6A,L9A,V13A,L16A,V20A,L23A,V27A,M30A,V34A,L48A,M51A mutations===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_12368282}}~~	+	== References ==
-		+	<references/>
-	~~==About this Structure==~~	+	__TOC__
-	~~[[1jcd]] is~~ a ~~3 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org/wiki/Escherichia_coli Escherichia coli]~~. ~~Full crystallographic information is available from [http:~~/~~/oca.weizmann.ac.il/oca-bin/ocashort?id=1JCD OCA].~~	+	</StructureSection>
-		+
-	==~~Reference~~==	+
-	<~~ref group="xtra">PMID:012368282<~~/~~ref~~><~~references group="xtra"~~/>	+
	[[Category: Escherichia coli]]		[[Category: Escherichia coli]]
	[[Category: Liu, J.]]		[[Category: Liu, J.]]

OCA: Protected "1jcd" [edit=sysop:move=sysop]

OCA — Wed, 05 Dec 2012 11:20:51 GMT

Protected "1jcd" [edit=sysop:move=sysop]

←Older revision

Revision as of 11:20, 5 December 2012

OCA at 11:20, 5 December 2012

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←Older revision		Revision as of 11:20, 5 December 2012
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-	{{Seed}}
	[[Image:1jcd.png\|left\|200px]]		[[Image:1jcd.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_1jcd", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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	{{STRUCTURE_1jcd\| PDB=1jcd \| SCENE= }}		{{STRUCTURE_1jcd\| PDB=1jcd \| SCENE= }}

	===Crystal Structure of a Novel Alanine-Zipper Trimer at 1.3 A Resolution, I6A,L9A,V13A,L16A,V20A,L23A,V27A,M30A,V34A,L48A,M51A mutations===		===Crystal Structure of a Novel Alanine-Zipper Trimer at 1.3 A Resolution, I6A,L9A,V13A,L16A,V20A,L23A,V27A,M30A,V34A,L48A,M51A mutations===

-
-	<!--
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-	(as it appears on PubMed at http://www.pubmed.gov), where 12368282 is the PubMed ID number.
-	-->
	{{ABSTRACT_PUBMED_12368282}}		{{ABSTRACT_PUBMED_12368282}}

	==About this Structure==		==About this Structure==
-	~~1JCD~~ is a 3 ~~chains~~ structure ~~of sequences~~ from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1JCD OCA].	+	[[1jcd]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1JCD OCA].

	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~12368282~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:012368282</ref><references group="xtra"/>
	[[Category: Escherichia coli]]		[[Category: Escherichia coli]]
	[[Category: Liu, J.]]		[[Category: Liu, J.]]
	[[Category: Lu, M.]]		[[Category: Lu, M.]]
	[[Category: Alanine-zipper]]		[[Category: Alanine-zipper]]
-	[[Category: Coiled coil]]
	[[Category: Helix capping]]		[[Category: Helix capping]]
	[[Category: Lipoprotein]]		[[Category: Lipoprotein]]
		+	[[Category: Membrane protein]]
	[[Category: Protein folding]]		[[Category: Protein folding]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 20:45:27 2009''

OCA at 18:45, 17 February 2009

OCA — Tue, 17 Feb 2009 18:45:29 GMT

←Older revision		Revision as of 18:45, 17 February 2009
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	==About this Structure==		==About this Structure==
-	1JCD is a ~~[[Single protein]]~~ structure of ~~sequence~~ from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1JCD OCA].	+	1JCD is a 3 chains structure of sequences from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1JCD OCA].

	==Reference==		==Reference==
-	~~An alanine-zipper structure determined by long range intermolecular interactions., Liu J, Lu M, J Biol Chem. 2002 Dec 13;277(50):48708-13. Epub 2002 Oct 3.~~ PMID:~~[http:~~//~~www.ncbi.nlm.nih.gov/pubmed/12368282 12368282]~~	+	<ref group="xtra">PMID:12368282</ref><references group="xtra"/>
	[[Category: Escherichia coli]]		[[Category: Escherichia coli]]
-	[[Category: Single protein]]
	[[Category: Liu, J.]]		[[Category: Liu, J.]]
	[[Category: Lu, M.]]		[[Category: Lu, M.]]
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	[[Category: Protein folding]]		[[Category: Protein folding]]

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue ~~Jul 1~~ 20:01:~~10 2008~~''	+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 20:45:27 2009''