1jzt - Revision history

OCA at 07:56, 3 April 2024

OCA — Wed, 03 Apr 2024 07:56:16 GMT

←Older revision		Revision as of 07:56, 3 April 2024
Line 3:		Line 3:
	<StructureSection load='1jzt' size='340' side='right'caption='[[1jzt]], [[Resolution\|resolution]] 1.94Å' scene=''>		<StructureSection load='1jzt' size='340' side='right'caption='[[1jzt]], [[Resolution\|resolution]] 1.94Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1jzt]] is a 2 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Atcc_18824 Atcc 18824~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1JZT OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=1JZT FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1jzt]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Saccharomyces_cerevisiae Saccharomyces cerevisiae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1JZT OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1JZT FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.94Å</td></tr>
-	<tr id='~~NonStdRes~~'><td class="sblockLbl"><b>[[~~Non-Standard_Residue~~\|~~NonStd Res~~:]]</b></td><td class="sblockDat"><scene name='pdbligand=~~MSE~~:~~SELENOMETHIONINE~~'>~~MSE~~</scene><~~/td></tr>~~	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	~~<tr id~~='~~gene'><td class~~=~~"sblockLbl"><b>[[Gene\|Gene~~:~~]]</b~~></td>~~<td class="sblockDat">YNL200C ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=4932 ATCC 18824])~~</td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1jzt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1jzt OCA], [https://pdbe.org/1jzt PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1jzt RCSB], [https://www.ebi.ac.uk/pdbsum/1jzt PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1jzt ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/1jzt TOPSAN]</span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=1jzt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1jzt OCA], [~~http~~://pdbe.org/1jzt PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=1jzt RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/1jzt PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=1jzt ProSAT], [~~http~~://www.topsan.org/Proteins/NYSGXRC/1jzt TOPSAN]</span></td></tr>	+
	</table>		</table>
	== Function ==		== Function ==
-	[~~[http~~://www.uniprot.org/uniprot/NNRE_YEAST NNRE_YEAST]] Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate dehydratase to allow the repair of both epimers of NAD(P)HX.[HAMAP-Rule:MF_03159]<ref>PMID:21994945</ref>	+	[https://www.uniprot.org/uniprot/NNRE_YEAST NNRE_YEAST] Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate dehydratase to allow the repair of both epimers of NAD(P)HX.[HAMAP-Rule:MF_03159]<ref>PMID:21994945</ref>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 25:		Line 24:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Atcc 18824]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Burley, S K~~]]	+	[[Category: Saccharomyces cerevisiae]]
-	[[Category: ~~Jiang, J S~~]]	+	[[Category: Burley SK]]
-	[[Category: ~~Manning, N O~~]]	+	[[Category: Jiang J-S]]
-	[[Category: ~~Structural genomic]]~~	+	[[Category: Manning NO]]
-	~~[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics]]~~	+
-	~~[[Category: PSI, Protein structure initiative]]~~	+
-	~~[[Category: Selenomethionine]]~~	+
-	~~[[Category: Unknown function]]~~	+
-	~~[[Category: Yeast hypothetical protein~~]]	+

OCA at 07:38, 25 November 2020

OCA — Wed, 25 Nov 2020 07:38:28 GMT

←Older revision		Revision as of 07:38, 25 November 2020
Line 1:		Line 1:

	==Crystal structure of yeast ynu0, YNL200c==		==Crystal structure of yeast ynu0, YNL200c==
-	<StructureSection load='1jzt' size='340' side='right' caption='[[1jzt]], [[Resolution\|resolution]] 1.94Å' scene=''>	+	<StructureSection load='1jzt' size='340' side='right'caption='[[1jzt]], [[Resolution\|resolution]] 1.94Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1jzt]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_18824 Atcc 18824]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1JZT OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1JZT FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1jzt]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_18824 Atcc 18824]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1JZT OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=1JZT FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">YNL200C ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=4932 ATCC 18824])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">YNL200C ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=4932 ATCC 18824])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1jzt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1jzt OCA], [http://pdbe.org/1jzt PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1jzt RCSB], [http://www.ebi.ac.uk/pdbsum/1jzt PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1jzt ProSAT], [http://www.topsan.org/Proteins/NYSGXRC/1jzt TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=1jzt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1jzt OCA], [http://pdbe.org/1jzt PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1jzt RCSB], [http://www.ebi.ac.uk/pdbsum/1jzt PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1jzt ProSAT], [http://www.topsan.org/Proteins/NYSGXRC/1jzt TOPSAN]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 26:		Line 26:
	</StructureSection>		</StructureSection>
	[[Category: Atcc 18824]]		[[Category: Atcc 18824]]
		+	[[Category: Large Structures]]
	[[Category: Burley, S K]]		[[Category: Burley, S K]]
	[[Category: Jiang, J S]]		[[Category: Jiang, J S]]

OCA at 08:55, 17 January 2018

OCA — Wed, 17 Jan 2018 08:55:17 GMT

←Older revision		Revision as of 08:55, 17 January 2018
Line 1:		Line 1:
		+
	==Crystal structure of yeast ynu0, YNL200c==		==Crystal structure of yeast ynu0, YNL200c==
	<StructureSection load='1jzt' size='340' side='right' caption='[[1jzt]], [[Resolution\|resolution]] 1.94Å' scene=''>		<StructureSection load='1jzt' size='340' side='right' caption='[[1jzt]], [[Resolution\|resolution]] 1.94Å' scene=''>
Line 6:		Line 7:
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">YNL200C ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=4932 ATCC 18824])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">YNL200C ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=4932 ATCC 18824])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1jzt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1jzt OCA], [http://pdbe.org/1jzt PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1jzt RCSB], [http://www.ebi.ac.uk/pdbsum/1jzt PDBsum], [http://www.topsan.org/Proteins/NYSGXRC/1jzt TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1jzt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1jzt OCA], [http://pdbe.org/1jzt PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1jzt RCSB], [http://www.ebi.ac.uk/pdbsum/1jzt PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1jzt ProSAT], [http://www.topsan.org/Proteins/NYSGXRC/1jzt TOPSAN]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 14:		Line 15:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/jz/1jzt_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/jz/1jzt_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>

OCA at 04:24, 9 February 2016

OCA — Tue, 09 Feb 2016 04:24:06 GMT

←Older revision		Revision as of 04:24, 9 February 2016
Line 18:		Line 18:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1jzt ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	== References ==		== References ==

OCA at 18:36, 10 September 2015

OCA — Thu, 10 Sep 2015 18:36:22 GMT

←Older revision		Revision as of 18:36, 10 September 2015
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	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">YNL200C ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=4932 ATCC 18824])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">YNL200C ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=4932 ATCC 18824])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1jzt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1jzt OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1jzt RCSB], [http://www.ebi.ac.uk/pdbsum/1jzt PDBsum], [http://www.topsan.org/Proteins/NYSGXRC/1jzt TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1jzt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1jzt OCA], [http://pdbe.org/1jzt PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1jzt RCSB], [http://www.ebi.ac.uk/pdbsum/1jzt PDBsum], [http://www.topsan.org/Proteins/NYSGXRC/1jzt TOPSAN]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==

OCA at 04:24, 25 December 2014

OCA — Thu, 25 Dec 2014 04:24:23 GMT

←Older revision		Revision as of 04:24, 25 December 2014
Line 8:		Line 8:
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1jzt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1jzt OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1jzt RCSB], [http://www.ebi.ac.uk/pdbsum/1jzt PDBsum], [http://www.topsan.org/Proteins/NYSGXRC/1jzt TOPSAN]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1jzt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1jzt OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1jzt RCSB], [http://www.ebi.ac.uk/pdbsum/1jzt PDBsum], [http://www.topsan.org/Proteins/NYSGXRC/1jzt TOPSAN]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/NNRE_YEAST NNRE_YEAST]] Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate dehydratase to allow the repair of both epimers of NAD(P)HX.[HAMAP-Rule:MF_03159]<ref>PMID:21994945</ref>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 18:		Line 20:
	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].		</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
		+	== References ==
		+	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>

OCA at 06:05, 26 November 2014

OCA — Wed, 26 Nov 2014 06:05:56 GMT

←Older revision		Revision as of 06:05, 26 November 2014
Line 2:		Line 2:
	<StructureSection load='1jzt' size='340' side='right' caption='[[1jzt]], [[Resolution\|resolution]] 1.94Å' scene=''>		<StructureSection load='1jzt' size='340' side='right' caption='[[1jzt]], [[Resolution\|resolution]] 1.94Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1jzt]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Saccharomyces_cerevisiae Saccharomyces cerevisiae~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1JZT OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1JZT FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1jzt]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_18824 Atcc 18824]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1JZT OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1JZT FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">YNL200C ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=4932 ~~Saccharomyces cerevisiae~~])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">YNL200C ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=4932 ATCC 18824])</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1jzt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1jzt OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1jzt RCSB], [http://www.ebi.ac.uk/pdbsum/1jzt PDBsum], [http://www.topsan.org/Proteins/NYSGXRC/1jzt TOPSAN]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1jzt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1jzt OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1jzt RCSB], [http://www.ebi.ac.uk/pdbsum/1jzt PDBsum], [http://www.topsan.org/Proteins/NYSGXRC/1jzt TOPSAN]</span></td></tr>
	</table>		</table>
Line 20:		Line 20:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Saccharomyces cerevisiae~~]]	+	[[Category: Atcc 18824]]
	[[Category: Burley, S K]]		[[Category: Burley, S K]]
	[[Category: Jiang, J S]]		[[Category: Jiang, J S]]

OCA at 13:27, 6 November 2014

OCA — Thu, 06 Nov 2014 13:27:39 GMT

←Older revision		Revision as of 13:27, 6 November 2014
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1jzt]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Saccharomyces_cerevisiae Saccharomyces cerevisiae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1JZT OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1JZT FirstGlance]. <br>		<table><tr><td colspan='2'>[[1jzt]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Saccharomyces_cerevisiae Saccharomyces cerevisiae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1JZT OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1JZT FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>	+	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">YNL200C ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=4932 Saccharomyces cerevisiae])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">YNL200C ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=4932 Saccharomyces cerevisiae])</td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1jzt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1jzt OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1jzt RCSB], [http://www.ebi.ac.uk/pdbsum/1jzt PDBsum], [http://www.topsan.org/Proteins/NYSGXRC/1jzt TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1jzt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1jzt OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1jzt RCSB], [http://www.ebi.ac.uk/pdbsum/1jzt PDBsum], [http://www.topsan.org/Proteins/NYSGXRC/1jzt TOPSAN]</span></td></tr>
-	<table>	+	</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 21:		Line 21:
	</StructureSection>		</StructureSection>
	[[Category: Saccharomyces cerevisiae]]		[[Category: Saccharomyces cerevisiae]]
-	[[Category: Burley, S K.]]	+	[[Category: Burley, S K]]
-	[[Category: Jiang, J S.]]	+	[[Category: Jiang, J S]]
-	[[Category: Manning, N O~~.]]~~	+	[[Category: Manning, N O]]
-	~~[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics.]]~~	+
-	~~[[Category: New york sgx research center for structural genomic]]~~	+
-	~~[[Category: Nysgxrc]]~~	+
-	~~[[Category: Protein structure initiative]]~~	+
-	~~[[Category: Psi]]~~	+
-	~~[[Category: Selenomethionine~~]]	+
	[[Category: Structural genomic]]		[[Category: Structural genomic]]
		+	[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics]]
		+	[[Category: PSI, Protein structure initiative]]
		+	[[Category: Selenomethionine]]
	[[Category: Unknown function]]		[[Category: Unknown function]]
	[[Category: Yeast hypothetical protein]]		[[Category: Yeast hypothetical protein]]

OCA at 11:05, 28 September 2014

OCA — Sun, 28 Sep 2014 11:05:07 GMT

←Older revision		Revision as of 11:05, 28 September 2014
Line 1:		Line 1:
-	~~[[Image:1jzt.png\|left\|200px]]~~	+	==Crystal structure of yeast ynu0, YNL200c==
-		+	<StructureSection load='1jzt' size='340' side='right' caption='[[1jzt]], [[Resolution\|resolution]] 1.94Å' scene=''>
-	~~{{STRUCTURE_1jzt\| PDB=1jzt \| SCENE= }}~~	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[1jzt]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Saccharomyces_cerevisiae Saccharomyces cerevisiae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1JZT OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1JZT FirstGlance]. <br>
-	===Crystal structure of yeast ynu0, YNL200c===	+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene><br>
-		+	<tr><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-		+	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">YNL200C ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=4932 Saccharomyces cerevisiae])</td></tr>
-	==~~About this Structure~~==	+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1jzt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1jzt OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1jzt RCSB], [http://www.ebi.ac.uk/pdbsum/1jzt PDBsum], [http://www.topsan.org/Proteins/NYSGXRC/1jzt TOPSAN]</span></td></tr>
-	[[1jzt]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Saccharomyces_cerevisiae Saccharomyces cerevisiae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1JZT OCA].	+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/jz/1jzt_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	__TOC__
		+	</StructureSection>
	[[Category: Saccharomyces cerevisiae]]		[[Category: Saccharomyces cerevisiae]]
	[[Category: Burley, S K.]]		[[Category: Burley, S K.]]

OCA: Protected "1jzt" [edit=sysop:move=sysop]

OCA — Wed, 05 Dec 2012 11:33:11 GMT

Protected "1jzt" [edit=sysop:move=sysop]

←Older revision

Revision as of 11:33, 5 December 2012