1k45 - Revision history

OCA at 18:45, 29 November 2023

OCA — Wed, 29 Nov 2023 18:45:29 GMT

←Older revision		Revision as of 18:45, 29 November 2023
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	==The Solution Structure of the CBM4-2 Carbohydrate Binding Module from a Thermostable Rhodothermus marinus Xylanase.==		==The Solution Structure of the CBM4-2 Carbohydrate Binding Module from a Thermostable Rhodothermus marinus Xylanase.==
-	<StructureSection load='1k45' size='340' side='right'caption='[[1k45~~]], [[NMR_Ensembles_of_Models \| 1 NMR models~~]]' scene=''>	+	<StructureSection load='1k45' size='340' side='right'caption='[[1k45]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1k45]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Atcc_43812 Atcc 43812~~]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1K45 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1K45 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1k45]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Rhodothermus_marinus Rhodothermus marinus]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1K45 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1K45 FirstGlance]. <br>
-	</td></tr><tr id='~~related~~'><td class="sblockLbl"><b>[[~~Related_structure~~\|~~Related~~:]]</b></td><td class="sblockDat"~~><div style='overflow: auto; max-height: 3em;'>[[1k42\|1k42]]</div></td></tr>~~	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
-	~~<tr~~ id~~='gene'><td class~~="~~sblockLbl~~">~~<b>[[Gene\|Gene:]]</b></td><td class="sblockDat">xyn10A ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=29549 ATCC 43812])</td></tr>~~	+
-	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Endo-1,4-beta-xylanase Endo-1,4-beta-xylanase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.8 3.2.1.8] </span></td></tr>	+
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1k45 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1k45 OCA], [https://pdbe.org/1k45 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1k45 RCSB], [https://www.ebi.ac.uk/pdbsum/1k45 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1k45 ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1k45 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1k45 OCA], [https://pdbe.org/1k45 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1k45 RCSB], [https://www.ebi.ac.uk/pdbsum/1k45 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1k45 ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/P96988_RHOMR P96988_RHOMR]
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
Line 22:		Line 22:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Atcc 43812]]
-	[[Category: Endo-1,4-beta-xylanase]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Abou-Hachem, M]]	+	[[Category: Rhodothermus marinus]]
-	[[Category: Gilbert~~, H J~~]]	+	[[Category: Abou-Hachem M]]
-	[[Category: Holst, O]]	+	[[Category: Gilbert HJ]]
-	[[Category: Jamieson~~, S J~~]]	+	[[Category: Holst O]]
-	[[Category: Nordberg-Karlsson, E]]	+	[[Category: Jamieson SJ]]
-	[[Category: Simpson~~, P J~~]]	+	[[Category: Nordberg-Karlsson E]]
-	[[Category: Williamson~~, M P]]~~	+	[[Category: Simpson PJ]]
-	~~[[Category: Hydrolase~~]]	+	[[Category: Williamson MP]]

OCA at 08:07, 23 February 2022

OCA — Wed, 23 Feb 2022 08:07:22 GMT

←Older revision		Revision as of 08:07, 23 February 2022
Line 3:		Line 3:
	<StructureSection load='1k45' size='340' side='right'caption='[[1k45]], [[NMR_Ensembles_of_Models \| 1 NMR models]]' scene=''>		<StructureSection load='1k45' size='340' side='right'caption='[[1k45]], [[NMR_Ensembles_of_Models \| 1 NMR models]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1k45]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Atcc_43812 Atcc 43812]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1K45 OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=1K45 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1k45]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Atcc_43812 Atcc 43812]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1K45 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1K45 FirstGlance]. <br>
	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1k42\|1k42]]</div></td></tr>		</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1k42\|1k42]]</div></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">xyn10A ([~~http~~://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=29549 ATCC 43812])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">xyn10A ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=29549 ATCC 43812])</td></tr>
-	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://en.wikipedia.org/wiki/Endo-1,4-beta-xylanase Endo-1,4-beta-xylanase], with EC number [~~http~~://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.8 3.2.1.8] </span></td></tr>	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Endo-1,4-beta-xylanase Endo-1,4-beta-xylanase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.8 3.2.1.8] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=1k45 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1k45 OCA], [~~http~~://pdbe.org/1k45 PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=1k45 RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/1k45 PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=1k45 ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1k45 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1k45 OCA], [https://pdbe.org/1k45 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1k45 RCSB], [https://www.ebi.ac.uk/pdbsum/1k45 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1k45 ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 07:39, 25 November 2020

OCA — Wed, 25 Nov 2020 07:39:52 GMT

←Older revision		Revision as of 07:39, 25 November 2020
Line 1:		Line 1:

	==The Solution Structure of the CBM4-2 Carbohydrate Binding Module from a Thermostable Rhodothermus marinus Xylanase.==		==The Solution Structure of the CBM4-2 Carbohydrate Binding Module from a Thermostable Rhodothermus marinus Xylanase.==
-	<StructureSection load='1k45' size='340' side='right' caption='[[1k45]], [[NMR_Ensembles_of_Models \| 1 NMR models]]' scene=''>	+	<StructureSection load='1k45' size='340' side='right'caption='[[1k45]], [[NMR_Ensembles_of_Models \| 1 NMR models]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1k45]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_43812 Atcc 43812]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1K45 OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1K45 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1k45]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_43812 Atcc 43812]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1K45 OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=1K45 FirstGlance]. <br>
-	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1k42\|1k42]]</td></tr>	+	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1k42\|1k42]]</div></td></tr>
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">xyn10A ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=29549 ATCC 43812])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">xyn10A ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=29549 ATCC 43812])</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Endo-1,4-beta-xylanase Endo-1,4-beta-xylanase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.8 3.2.1.8] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Endo-1,4-beta-xylanase Endo-1,4-beta-xylanase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.8 3.2.1.8] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1k45 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1k45 OCA], [http://pdbe.org/1k45 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1k45 RCSB], [http://www.ebi.ac.uk/pdbsum/1k45 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1k45 ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=1k45 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1k45 OCA], [http://pdbe.org/1k45 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1k45 RCSB], [http://www.ebi.ac.uk/pdbsum/1k45 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1k45 ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
Line 24:		Line 24:
	[[Category: Atcc 43812]]		[[Category: Atcc 43812]]
	[[Category: Endo-1,4-beta-xylanase]]		[[Category: Endo-1,4-beta-xylanase]]
		+	[[Category: Large Structures]]
	[[Category: Abou-Hachem, M]]		[[Category: Abou-Hachem, M]]
	[[Category: Gilbert, H J]]		[[Category: Gilbert, H J]]

OCA at 07:20, 11 October 2017

OCA — Wed, 11 Oct 2017 07:20:36 GMT

←Older revision		Revision as of 07:20, 11 October 2017
Line 1:		Line 1:
		+
	==The Solution Structure of the CBM4-2 Carbohydrate Binding Module from a Thermostable Rhodothermus marinus Xylanase.==		==The Solution Structure of the CBM4-2 Carbohydrate Binding Module from a Thermostable Rhodothermus marinus Xylanase.==
	<StructureSection load='1k45' size='340' side='right' caption='[[1k45]], [[NMR_Ensembles_of_Models \| 1 NMR models]]' scene=''>		<StructureSection load='1k45' size='340' side='right' caption='[[1k45]], [[NMR_Ensembles_of_Models \| 1 NMR models]]' scene=''>
Line 6:		Line 7:
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">xyn10A ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=29549 ATCC 43812])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">xyn10A ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=29549 ATCC 43812])</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Endo-1,4-beta-xylanase Endo-1,4-beta-xylanase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.8 3.2.1.8] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Endo-1,4-beta-xylanase Endo-1,4-beta-xylanase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.8 3.2.1.8] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1k45 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1k45 OCA], [http://pdbe.org/1k45 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1k45 RCSB], [http://www.ebi.ac.uk/pdbsum/1k45 PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1k45 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1k45 OCA], [http://pdbe.org/1k45 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1k45 RCSB], [http://www.ebi.ac.uk/pdbsum/1k45 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1k45 ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 01:58, 11 September 2015

OCA — Fri, 11 Sep 2015 01:58:05 GMT

←Older revision		Revision as of 01:58, 11 September 2015
Line 6:		Line 6:
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">xyn10A ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=29549 ATCC 43812])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">xyn10A ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=29549 ATCC 43812])</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Endo-1,4-beta-xylanase Endo-1,4-beta-xylanase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.8 3.2.1.8] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Endo-1,4-beta-xylanase Endo-1,4-beta-xylanase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.8 3.2.1.8] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1k45 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1k45 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1k45 RCSB], [http://www.ebi.ac.uk/pdbsum/1k45 PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1k45 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1k45 OCA], [http://pdbe.org/1k45 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1k45 RCSB], [http://www.ebi.ac.uk/pdbsum/1k45 PDBsum]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
Line 16:		Line 16:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 1k45" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>

OCA at 05:50, 22 December 2014

OCA — Mon, 22 Dec 2014 05:50:17 GMT

←Older revision		Revision as of 05:50, 22 December 2014
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1k45]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_43812 Atcc 43812]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1K45 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1K45 FirstGlance]. <br>		<table><tr><td colspan='2'>[[1k45]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_43812 Atcc 43812]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1K45 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1K45 FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1k42\|1k42]]</td></tr>	+	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1k42\|1k42]]</td></tr>
-	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">xyn10A ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=29549 ATCC 43812])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">xyn10A ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=29549 ATCC 43812])</td></tr>
-	<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Endo-1,4-beta-xylanase Endo-1,4-beta-xylanase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.8 3.2.1.8] </span></td></tr>	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Endo-1,4-beta-xylanase Endo-1,4-beta-xylanase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.8 3.2.1.8] </span></td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1k45 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1k45 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1k45 RCSB], [http://www.ebi.ac.uk/pdbsum/1k45 PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1k45 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1k45 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1k45 RCSB], [http://www.ebi.ac.uk/pdbsum/1k45 PDBsum]</span></td></tr>
-	<table>	+	</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
Line 22:		Line 22:
	[[Category: Atcc 43812]]		[[Category: Atcc 43812]]
	[[Category: Endo-1,4-beta-xylanase]]		[[Category: Endo-1,4-beta-xylanase]]
-	[[Category: Abou-Hachem, M.]]	+	[[Category: Abou-Hachem, M]]
-	[[Category: Gilbert, H J.]]	+	[[Category: Gilbert, H J]]
-	[[Category: Holst, O.]]	+	[[Category: Holst, O]]
-	[[Category: Jamieson, S J.]]	+	[[Category: Jamieson, S J]]
-	[[Category: Nordberg-Karlsson, E.]]	+	[[Category: Nordberg-Karlsson, E]]
-	[[Category: Simpson, P J.]]	+	[[Category: Simpson, P J]]
-	[[Category: Williamson, M P.]]	+	[[Category: Williamson, M P]]
	[[Category: Hydrolase]]		[[Category: Hydrolase]]

OCA at 05:41, 8 June 2014

OCA — Sun, 08 Jun 2014 05:41:58 GMT

←Older revision		Revision as of 05:41, 8 June 2014
Line 1:		Line 1:
-	[[~~Image:~~1k45.~~png~~\|~~left~~\|~~200px~~]]	+	==The Solution Structure of the CBM4-2 Carbohydrate Binding Module from a Thermostable Rhodothermus marinus Xylanase.==
		+	<StructureSection load='1k45' size='340' side='right' caption='[[1k45]], [[NMR_Ensembles_of_Models \| 1 NMR models]]' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[1k45]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_43812 Atcc 43812]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1K45 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1K45 FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1k42\|1k42]]</td></tr>
		+	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">xyn10A ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=29549 ATCC 43812])</td></tr>
		+	<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Endo-1,4-beta-xylanase Endo-1,4-beta-xylanase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.8 3.2.1.8] </span></td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1k45 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1k45 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1k45 RCSB], [http://www.ebi.ac.uk/pdbsum/1k45 PDBsum]</span></td></tr>
		+	<table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	The solution structure is presented for the second family 4 carbohydrate binding module (CBM4-2) of xylanase 10A from the thermophilic bacterium Rhodothermus marinus. CBM4-2, which binds xylan tightly, has a beta-sandwich structure formed by 11 strands, and contains a prominent cleft. From NMR titrations, it is shown that the cleft is the binding site for xylan, and that the main amino acids interacting with xylan are Asn31, Tyr69, Glu72, Phe110, Arg115, and His146. Key liganding residues are Tyr69 and Phe110, which form stacking interactions with the sugar. It is suggested that the loops on which the rings are displayed can alter their conformation on substrate binding, which may have functional importance. Comparison both with other family 4 cellulose binding modules and with the structurally similar family 22 xylan binding module shows that the key aromatic residues are in similar positions, and that the bottom of the cleft is much more hydrophobic in the cellulose binding modules than the xylan binding proteins. It is concluded that substrate specificity is determined by a combination of ring orientation and the nature of the residues lining the bottom of the binding cleft.

-	~~{{STRUCTURE_1k45\| PDB=1k45 \| SCENE= }}~~	+	The solution structure of the CBM4-2 carbohydrate binding module from a thermostable Rhodothermus marinus xylanase.,Simpson PJ, Jamieson SJ, Abou-Hachem M, Karlsson EN, Gilbert HJ, Holst O, Williamson MP Biochemistry. 2002 May 7;41(18):5712-9. PMID:11980475<ref>PMID:11980475</ref>

-	~~===The Solution Structure~~ of the ~~CBM4-2 Carbohydrate Binding Module from a Thermostable Rhodothermus marinus Xylanase~~.~~===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_11980475}}~~	+	== References ==
-		+	<references/>
-	~~==About this Structure==~~	+	__TOC__
-	~~[[1k45]] is a 1 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org~~/~~wiki/Rhodothermus_marinus Rhodothermus marinus]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1K45 OCA].~~	+	</StructureSection>
-		+	[[Category: Atcc 43812]]
-	==~~Reference~~==	+
-	<~~ref group="xtra">PMID:011980475<~~/~~ref~~><~~references group="xtra"~~/>	+
	[[Category: Endo-1,4-beta-xylanase]]		[[Category: Endo-1,4-beta-xylanase]]
-	[[Category: Rhodothermus marinus]]
	[[Category: Abou-Hachem, M.]]		[[Category: Abou-Hachem, M.]]
	[[Category: Gilbert, H J.]]		[[Category: Gilbert, H J.]]

OCA: Protected "1k45" [edit=sysop:move=sysop]

OCA — Tue, 14 Aug 2012 16:14:44 GMT

Protected "1k45" [edit=sysop:move=sysop]

←Older revision

Revision as of 16:14, 14 August 2012

OCA at 16:14, 14 August 2012

OCA — Tue, 14 Aug 2012 16:14:42 GMT

←Older revision		Revision as of 16:14, 14 August 2012
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-	{{Seed}}
	[[Image:1k45.png\|left\|200px]]		[[Image:1k45.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_1k45", creates the "Structure Box" on the page.
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	{{STRUCTURE_1k45\| PDB=1k45 \| SCENE= }}		{{STRUCTURE_1k45\| PDB=1k45 \| SCENE= }}

	===The Solution Structure of the CBM4-2 Carbohydrate Binding Module from a Thermostable Rhodothermus marinus Xylanase.===		===The Solution Structure of the CBM4-2 Carbohydrate Binding Module from a Thermostable Rhodothermus marinus Xylanase.===

-
-	<!--
-	The line below this paragraph, {{ABSTRACT_PUBMED_11980475}}, adds the Publication Abstract to the page
-	(as it appears on PubMed at http://www.pubmed.gov), where 11980475 is the PubMed ID number.
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	{{ABSTRACT_PUBMED_11980475}}		{{ABSTRACT_PUBMED_11980475}}

	==About this Structure==		==About this Structure==
-	~~1K45 is a~~ [[~~Single protein~~]] structure of sequence from [http://en.wikipedia.org/wiki/Rhodothermus_marinus Rhodothermus marinus]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1K45 OCA].	+	[[1k45]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Rhodothermus_marinus Rhodothermus marinus]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1K45 OCA].

	==Reference==		==Reference==
-	The solution structure of the CBM4-2 carbohydrate binding module from a thermostable Rhodothermus marinus xylanase., Simpson PJ, Jamieson SJ, Abou-Hachem M, Karlsson EN, Gilbert HJ, Holst O, Williamson MP, Biochemistry. 2002 May 7;41(18):5712-9. PMID:~~[http://www.ncbi.nlm.nih.gov~~/~~pubmed~~/~~11980475 11980475]~~	+	<ref group="xtra">PMID:011980475</ref><references group="xtra"/>
	[[Category: Endo-1,4-beta-xylanase]]		[[Category: Endo-1,4-beta-xylanase]]
	[[Category: Rhodothermus marinus]]		[[Category: Rhodothermus marinus]]
-	[[Category: Single protein]]
	[[Category: Abou-Hachem, M.]]		[[Category: Abou-Hachem, M.]]
	[[Category: Gilbert, H J.]]		[[Category: Gilbert, H J.]]
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	[[Category: Simpson, P J.]]		[[Category: Simpson, P J.]]
	[[Category: Williamson, M P.]]		[[Category: Williamson, M P.]]
-		+	[[Category: Hydrolase]]
-	~~''Page seeded by~~ [~~http~~:~~//oca.weizmann.ac.il/oca OCA~~ ] ~~on Wed Jul 2 06:26:58 2008''~~	+

OCA at 05:28, 2 July 2008

OCA — Wed, 02 Jul 2008 05:28:18 GMT

←Older revision		Revision as of 05:28, 2 July 2008
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-	[[Image:1k45.~~gif~~\|left\|200px]]	+	{{Seed}}
		+	[[Image:1k45.png\|left\|200px]]

	<!--		<!--
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	{{STRUCTURE_1k45\| PDB=1k45 \| SCENE= }}		{{STRUCTURE_1k45\| PDB=1k45 \| SCENE= }}

-	~~'''~~The Solution Structure of the CBM4-2 Carbohydrate Binding Module from a Thermostable Rhodothermus marinus Xylanase.~~'''~~	+	===The Solution Structure of the CBM4-2 Carbohydrate Binding Module from a Thermostable Rhodothermus marinus Xylanase.===


-	~~==Overview==~~	+	<!--
-	The ~~solution structure is presented for the second family 4 carbohydrate binding module (CBM4-2) of xylanase 10A from the thermophilic bacterium Rhodothermus marinus. CBM4-2~~, ~~which binds xylan tightly~~, ~~has a beta-sandwich structure formed by 11 strands, and contains a prominent cleft. From NMR titrations, it is shown that~~ the ~~cleft is~~ the ~~binding site for xylan, and that the main amino acids interacting with xylan are Asn31, Tyr69, Glu72, Phe110, Arg115, and His146~~. ~~Key liganding residues are Tyr69 and Phe110, which form stacking interactions with the sugar~~. ~~It is suggested that the loops on which the rings are displayed can alter their conformation on substrate binding~~, which may have functional importance. Comparison both with other family 4 cellulose binding modules and with the structurally similar family 22 xylan binding module shows that the key aromatic residues are in similar positions, and that the bottom of the cleft is ~~much more hydrophobic in~~ the cellulose binding modules than the xylan binding proteins. It is concluded that substrate specificity is determined by a combination of ring orientation and the nature of the residues lining the bottom of the binding cleft.	+	The line below this paragraph, {{ABSTRACT_PUBMED_11980475}}, adds the Publication Abstract to the page
		+	(as it appears on PubMed at http://www.pubmed.gov), where 11980475 is the PubMed ID number.
		+	-->
		+	{{ABSTRACT_PUBMED_11980475}}

	==About this Structure==		==About this Structure==
-	1K45 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Rhodothermus_marinus Rhodothermus marinus]. Full ~~crystallographic~~ information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1K45 OCA].	+	1K45 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Rhodothermus_marinus Rhodothermus marinus]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1K45 OCA].

	==Reference==		==Reference==
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	[[Category: Simpson, P J.]]		[[Category: Simpson, P J.]]
	[[Category: Williamson, M P.]]		[[Category: Williamson, M P.]]
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on ~~Fri May~~ 2 22:17:00 2008''	+
		+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jul 2 06:26:58 2008''