1kj1 - Revision history

OCA at 08:59, 16 August 2023

OCA — Wed, 16 Aug 2023 08:59:19 GMT

←Older revision		Revision as of 08:59, 16 August 2023
Line 4:		Line 4:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1kj1]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Allium_sativum Allium sativum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1KJ1 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1KJ1 FirstGlance]. <br>		<table><tr><td colspan='2'>[[1kj1]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Allium_sativum Allium sativum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1KJ1 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1KJ1 FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=MAN:ALPHA~~-~~D-MANNOSE'>MAN</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.2Å</td></tr>
-	<tr id='~~related~~'><td class="sblockLbl"><b>[[~~Related_structure~~\|~~Related~~:]]</b></td><td class="sblockDat"><~~div style~~='~~overflow~~: ~~auto; max~~-~~height: 3em;~~'>~~[[1bwu\|1bwu]]~~</~~div~~></td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MAN:ALPHA-D-MANNOSE'>MAN</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1kj1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1kj1 OCA], [https://pdbe.org/1kj1 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1kj1 RCSB], [https://www.ebi.ac.uk/pdbsum/1kj1 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1kj1 ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1kj1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1kj1 OCA], [https://pdbe.org/1kj1 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1kj1 RCSB], [https://www.ebi.ac.uk/pdbsum/1kj1 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1kj1 ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/Q38789_ALLSA Q38789_ALLSA]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 36:		Line 38:
	[[Category: Allium sativum]]		[[Category: Allium sativum]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Chandra~~, N R~~]]	+	[[Category: Chandra NR]]
-	[[Category: Ramachandraiah, G]]	+	[[Category: Ramachandraiah G]]
-	[[Category: Surolia, A]]	+	[[Category: Surolia A]]
-	[[Category: Vijayan, M]]	+	[[Category: Vijayan M]]
-	~~[[Category: Bulb lectin]]~~	+
-	~~[[Category: Mannose]]~~	+
-	~~[[Category: Plant protein~~]]	+

OCA at 08:48, 21 April 2021

OCA — Wed, 21 Apr 2021 08:48:18 GMT

←Older revision		Revision as of 08:48, 21 April 2021
Line 3:		Line 3:
	<StructureSection load='1kj1' size='340' side='right'caption='[[1kj1]], [[Resolution\|resolution]] 2.20Å' scene=''>		<StructureSection load='1kj1' size='340' side='right'caption='[[1kj1]], [[Resolution\|resolution]] 2.20Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1kj1]] is a 4 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Allsa Allsa~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1KJ1 OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1KJ1 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1kj1]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Allium_sativum Allium sativum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1KJ1 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1KJ1 FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MAN:ALPHA-D-MANNOSE'>MAN</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MAN:ALPHA-D-MANNOSE'>MAN</scene></td></tr>
-	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1bwu\|1bwu]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1bwu\|1bwu]]</div></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1kj1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1kj1 OCA], [~~http~~://pdbe.org/1kj1 PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=1kj1 RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/1kj1 PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=1kj1 ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1kj1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1kj1 OCA], [https://pdbe.org/1kj1 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1kj1 RCSB], [https://www.ebi.ac.uk/pdbsum/1kj1 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1kj1 ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 34:		Line 34:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Allsa~~]]	+	[[Category: Allium sativum]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
	[[Category: Chandra, N R]]		[[Category: Chandra, N R]]

OCA at 12:57, 17 July 2019

OCA — Wed, 17 Jul 2019 12:57:37 GMT

←Older revision		Revision as of 12:57, 17 July 2019
Line 1:		Line 1:

	==MANNOSE-SPECIFIC AGGLUTININ (LECTIN) FROM GARLIC (ALLIUM SATIVUM) BULBS COMPLEXED WITH ALPHA-D-MANNOSE==		==MANNOSE-SPECIFIC AGGLUTININ (LECTIN) FROM GARLIC (ALLIUM SATIVUM) BULBS COMPLEXED WITH ALPHA-D-MANNOSE==
-	<StructureSection load='1kj1' size='340' side='right' caption='[[1kj1]], [[Resolution\|resolution]] 2.20Å' scene=''>	+	<StructureSection load='1kj1' size='340' side='right'caption='[[1kj1]], [[Resolution\|resolution]] 2.20Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1kj1]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Allsa Allsa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1KJ1 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1KJ1 FirstGlance]. <br>		<table><tr><td colspan='2'>[[1kj1]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Allsa Allsa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1KJ1 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1KJ1 FirstGlance]. <br>
Line 12:		Line 12:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/kj/1kj1_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/kj/1kj1_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
Line 29:		Line 29:

	==See Also==		==See Also==
-	*[[Agglutinin\|Agglutinin]]	+	*[[Agglutinin 3D structures\|Agglutinin 3D structures]]
	== References ==		== References ==
	<references/>		<references/>
Line 35:		Line 35:
	</StructureSection>		</StructureSection>
	[[Category: Allsa]]		[[Category: Allsa]]
		+	[[Category: Large Structures]]
	[[Category: Chandra, N R]]		[[Category: Chandra, N R]]
	[[Category: Ramachandraiah, G]]		[[Category: Ramachandraiah, G]]

OCA at 07:14, 11 October 2017

OCA — Wed, 11 Oct 2017 07:14:35 GMT

←Older revision		Revision as of 07:14, 11 October 2017
Line 1:		Line 1:
		+
	==MANNOSE-SPECIFIC AGGLUTININ (LECTIN) FROM GARLIC (ALLIUM SATIVUM) BULBS COMPLEXED WITH ALPHA-D-MANNOSE==		==MANNOSE-SPECIFIC AGGLUTININ (LECTIN) FROM GARLIC (ALLIUM SATIVUM) BULBS COMPLEXED WITH ALPHA-D-MANNOSE==
	<StructureSection load='1kj1' size='340' side='right' caption='[[1kj1]], [[Resolution\|resolution]] 2.20Å' scene=''>		<StructureSection load='1kj1' size='340' side='right' caption='[[1kj1]], [[Resolution\|resolution]] 2.20Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1kj1]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Allium_sativum Allium sativum~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1KJ1 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1KJ1 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1kj1]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Allsa Allsa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1KJ1 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1KJ1 FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MAN:ALPHA-D-MANNOSE'>MAN</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MAN:ALPHA-D-MANNOSE'>MAN</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1bwu\|1bwu]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1bwu\|1bwu]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1kj1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1kj1 OCA], [http://pdbe.org/1kj1 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1kj1 RCSB], [http://www.ebi.ac.uk/pdbsum/1kj1 PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1kj1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1kj1 OCA], [http://pdbe.org/1kj1 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1kj1 RCSB], [http://www.ebi.ac.uk/pdbsum/1kj1 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1kj1 ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 15:		Line 16:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1kj1 ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
Line 26:		Line 27:
	</div>		</div>
	<div class="pdbe-citations 1kj1" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 1kj1" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[Agglutinin\|Agglutinin]]
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Allium sativum~~]]	+	[[Category: Allsa]]
	[[Category: Chandra, N R]]		[[Category: Chandra, N R]]
	[[Category: Ramachandraiah, G]]		[[Category: Ramachandraiah, G]]

OCA at 13:29, 11 September 2015

OCA — Fri, 11 Sep 2015 13:29:57 GMT

←Older revision		Revision as of 13:29, 11 September 2015
Line 5:		Line 5:
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MAN:ALPHA-D-MANNOSE'>MAN</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MAN:ALPHA-D-MANNOSE'>MAN</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1bwu\|1bwu]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1bwu\|1bwu]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1kj1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1kj1 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1kj1 RCSB], [http://www.ebi.ac.uk/pdbsum/1kj1 PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1kj1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1kj1 OCA], [http://pdbe.org/1kj1 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1kj1 RCSB], [http://www.ebi.ac.uk/pdbsum/1kj1 PDBsum]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 25:		Line 25:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 1kj1" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>

OCA at 15:18, 5 January 2015

OCA — Mon, 05 Jan 2015 15:18:17 GMT

←Older revision		Revision as of 15:18, 5 January 2015
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1kj1]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Allium_sativum Allium sativum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1KJ1 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1KJ1 FirstGlance]. <br>		<table><tr><td colspan='2'>[[1kj1]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Allium_sativum Allium sativum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1KJ1 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1KJ1 FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MAN:ALPHA-D-MANNOSE'>MAN</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MAN:ALPHA-D-MANNOSE'>MAN</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1bwu\|1bwu]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1bwu\|1bwu]]</td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1kj1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1kj1 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1kj1 RCSB], [http://www.ebi.ac.uk/pdbsum/1kj1 PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1kj1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1kj1 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1kj1 RCSB], [http://www.ebi.ac.uk/pdbsum/1kj1 PDBsum]</span></td></tr>
-	<table>	+	</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 30:		Line 30:
	</StructureSection>		</StructureSection>
	[[Category: Allium sativum]]		[[Category: Allium sativum]]
-	[[Category: Chandra, N R.]]	+	[[Category: Chandra, N R]]
-	[[Category: Ramachandraiah, G.]]	+	[[Category: Ramachandraiah, G]]
-	[[Category: Surolia, A.]]	+	[[Category: Surolia, A]]
-	[[Category: Vijayan, M.]]	+	[[Category: Vijayan, M]]
	[[Category: Bulb lectin]]		[[Category: Bulb lectin]]
	[[Category: Mannose]]		[[Category: Mannose]]
	[[Category: Plant protein]]		[[Category: Plant protein]]

OCA at 11:38, 28 September 2014

OCA — Sun, 28 Sep 2014 11:38:29 GMT

←Older revision		Revision as of 11:38, 28 September 2014
Line 1:		Line 1:
-	[[~~Image:~~1kj1.~~png~~\|~~left~~\|200px]]	+	==MANNOSE-SPECIFIC AGGLUTININ (LECTIN) FROM GARLIC (ALLIUM SATIVUM) BULBS COMPLEXED WITH ALPHA-D-MANNOSE==
		+	<StructureSection load='1kj1' size='340' side='right' caption='[[1kj1]], [[Resolution\|resolution]] 2.20Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[1kj1]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Allium_sativum Allium sativum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1KJ1 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1KJ1 FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MAN:ALPHA-D-MANNOSE'>MAN</scene><br>
		+	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1bwu\|1bwu]]</td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1kj1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1kj1 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1kj1 RCSB], [http://www.ebi.ac.uk/pdbsum/1kj1 PDBsum]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/kj/1kj1_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	The structure of dimeric garlic lectin was previously determined to an effective resolution of 2.8A using X-ray intensity data processed by the XDS package and refined using X-PLOR [Chandra et al. (1999), J. Mol. Biol. 285, 1157--1168]. Repeated attempts to grow better crystals with a view to improving the definition of the structure did not succeed. The available raw data were then reprocessed using DENZO. The structure was re-refined with both X-PLOR and CNS separately using the reprocessed data, which extended to a resolution of 2.2A. These two sets of refinements and the two sets using the XDS-processed data afforded an opportunity to compare the performance of different data-processing and refinement packages when dealing with data from weakly diffracting crystals. The best results were obtained when CNS was employed for refinement using data processed by DENZO. The quality and the resolution of the map and the definition of the structure improved substantially. In particular, the amino-acid residues at the variable locations in the sequence, and hence the isolectins, could be identified with a high degree of confidence. It could be established that the crystal asymmetric unit contains two identical heterodimers. The new refined structure also provided a better definition of other finer structural details.

-	~~{{STRUCTURE_1kj1\| PDB=1kj1 \| SCENE= }}~~	+	Re-refinement using reprocessed data to improve the quality of the structure: a case study involving garlic lectin.,Ramachandraiah G, Chandra NR, Surolia A, Vijayan M Acta Crystallogr D Biol Crystallogr. 2002 Mar;58(Pt 3):414-20. Epub 2002, Feb 21. PMID:11856826<ref>PMID:11856826</ref>

-	~~===MANNOSE-SPECIFIC AGGLUTININ (LECTIN) FROM GARLIC (ALLIUM SATIVUM) BULBS COMPLEXED WITH ALPHA-D-MANNOSE===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_11856826}}~~	+	== References ==
-		+	<references/>
-	~~==About this Structure==~~	+	__TOC__
-	~~[[1kj1]] is~~ a ~~4 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org/wiki/Allium_sativum Allium sativum]~~. ~~Full crystallographic information is available from [http:~~/~~/oca.weizmann.ac.il/oca-bin/ocashort?id=1KJ1 OCA].~~	+	</StructureSection>
-		+
-	==~~Reference~~==	+
-	<~~ref group="xtra">PMID:011856826<~~/~~ref~~><~~ref group="xtra">PMID:017009862</ref><references group="xtra"~~/>	+
	[[Category: Allium sativum]]		[[Category: Allium sativum]]
	[[Category: Chandra, N R.]]		[[Category: Chandra, N R.]]

OCA: Protected "1kj1" [edit=sysop:move=sysop]

OCA — Wed, 05 Dec 2012 19:33:39 GMT

Protected "1kj1" [edit=sysop:move=sysop]

←Older revision

Revision as of 19:33, 5 December 2012

OCA at 19:33, 5 December 2012

OCA — Wed, 05 Dec 2012 19:33:35 GMT

←Older revision		Revision as of 19:33, 5 December 2012
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-	{{Seed}}
	[[Image:1kj1.png\|left\|200px]]		[[Image:1kj1.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_1kj1", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
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	{{STRUCTURE_1kj1\| PDB=1kj1 \| SCENE= }}		{{STRUCTURE_1kj1\| PDB=1kj1 \| SCENE= }}

	===MANNOSE-SPECIFIC AGGLUTININ (LECTIN) FROM GARLIC (ALLIUM SATIVUM) BULBS COMPLEXED WITH ALPHA-D-MANNOSE===		===MANNOSE-SPECIFIC AGGLUTININ (LECTIN) FROM GARLIC (ALLIUM SATIVUM) BULBS COMPLEXED WITH ALPHA-D-MANNOSE===

-
-	<!--
-	The line below this paragraph, {{ABSTRACT_PUBMED_11856826}}, adds the Publication Abstract to the page
-	(as it appears on PubMed at http://www.pubmed.gov), where 11856826 is the PubMed ID number.
-	-->
	{{ABSTRACT_PUBMED_11856826}}		{{ABSTRACT_PUBMED_11856826}}

	==About this Structure==		==About this Structure==
-	~~1KJ1~~ is a 4 ~~chains~~ structure ~~of sequences~~ from [http://en.wikipedia.org/wiki/Allium_sativum Allium sativum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1KJ1 OCA].	+	[[1kj1]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Allium_sativum Allium sativum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1KJ1 OCA].

	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~11856826~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:011856826</ref><ref group="xtra">PMID:017009862</ref><references group="xtra"/>
	[[Category: Allium sativum]]		[[Category: Allium sativum]]
	[[Category: Chandra, N R.]]		[[Category: Chandra, N R.]]
Line 32:		Line 20:
	[[Category: Mannose]]		[[Category: Mannose]]
	[[Category: Plant protein]]		[[Category: Plant protein]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 23:15:15 2009''

OCA at 21:15, 17 February 2009

OCA — Tue, 17 Feb 2009 21:15:24 GMT

←Older revision		Revision as of 21:15, 17 February 2009
Line 20:		Line 20:

	==About this Structure==		==About this Structure==
-	1KJ1 is a ~~[[Protein complex]]~~ structure of sequences from [http://en.wikipedia.org/wiki/Allium_sativum Allium sativum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1KJ1 OCA].	+	1KJ1 is a 4 chains structure of sequences from [http://en.wikipedia.org/wiki/Allium_sativum Allium sativum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1KJ1 OCA].

	==Reference==		==Reference==
-	Re-refinement using reprocessed data to improve the quality of the structure: a case study involving garlic lectin., Ramachandraiah G, Chandra NR, Surolia A, Vijayan M, Acta Crystallogr D Biol Crystallogr. 2002 Mar;58(Pt 3):414-20. Epub 2002, Feb 21. PMID:~~[http:~~//~~www.ncbi.nlm.nih.gov/pubmed/11856826 11856826]~~	+	<ref group="xtra">PMID:11856826</ref><references group="xtra"/>
	[[Category: Allium sativum]]		[[Category: Allium sativum]]
-	[[Category: Protein complex]]
	[[Category: Chandra, N R.]]		[[Category: Chandra, N R.]]
	[[Category: Ramachandraiah, G.]]		[[Category: Ramachandraiah, G.]]
Line 34:		Line 33:
	[[Category: Plant protein]]		[[Category: Plant protein]]

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on ~~Wed Jul 2 10~~:25:~~06 2008~~''	+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 23:15:15 2009''