1kk9 - Revision history

OCA at 08:00, 3 April 2024

OCA — Wed, 03 Apr 2024 08:00:59 GMT

←Older revision		Revision as of 08:00, 3 April 2024
Line 3:		Line 3:
	<StructureSection load='1kk9' size='340' side='right'caption='[[1kk9]], [[Resolution\|resolution]] 2.10Å' scene=''>		<StructureSection load='1kk9' size='340' side='right'caption='[[1kk9]], [[Resolution\|resolution]] 2.10Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1kk9]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~"bacillus_coli"_migula_1895 "bacillus~~ coli~~" migula 1895~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1KK9 OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=1KK9 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1kk9]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1KK9 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1KK9 FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.1Å</td></tr>
-	<tr id='~~NonStdRes~~'><td class="sblockLbl"><b>[[~~Non-Standard_Residue~~\|~~NonStd Res~~:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene><~~/td></tr>~~	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-	~~<tr id~~='~~gene'><td class~~=~~"sblockLbl"><b>[[Gene\|Gene~~:~~]]</b~~></td>~~<td class="sblockDat">ycio ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 "Bacillus coli" Migula 1895])~~</td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1kk9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1kk9 OCA], [https://pdbe.org/1kk9 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1kk9 RCSB], [https://www.ebi.ac.uk/pdbsum/1kk9 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1kk9 ProSAT], [https://www.topsan.org/Proteins/BSGI/1kk9 TOPSAN]</span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=1kk9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1kk9 OCA], [~~http~~://pdbe.org/1kk9 PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=1kk9 RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/1kk9 PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=1kk9 ProSAT], [~~http~~://www.topsan.org/Proteins/BSGI/1kk9 TOPSAN]</span></td></tr>	+
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/YCIO_ECOLI YCIO_ECOLI]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Bacillus~~ coli ~~migula 1895~~]]	+	[[Category: Escherichia coli]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	~~[[Category: Structural genomic]]~~	+	[[Category: Cygler M]]
-	[[Category: Cygler, M]]	+	[[Category: Huang L-W]]
-	[[Category: Huang, L W]]	+	[[Category: Jia J]]
-	[[Category: Jia, J]]	+	[[Category: Lunin VV]]
-	[[Category: Lunin~~, V V~~]]	+	[[Category: Matte A]]
-	[[Category: Matte, A]]	+	[[Category: Sauve V]]
-	[[Category: Sauve, V]]	+
-	~~[[Category: Alpha/beta open twisted sheet]]~~	+
-	~~[[Category: Bsgi]]~~	+
-	~~[[Category: Unknown function~~]]	+

OCA at 07:46, 25 November 2020

OCA — Wed, 25 Nov 2020 07:46:14 GMT

←Older revision		Revision as of 07:46, 25 November 2020
Line 1:		Line 1:

	==CRYSTAL STRUCTURE OF E. COLI YCIO==		==CRYSTAL STRUCTURE OF E. COLI YCIO==
-	<StructureSection load='1kk9' size='340' side='right' caption='[[1kk9]], [[Resolution\|resolution]] 2.10Å' scene=''>	+	<StructureSection load='1kk9' size='340' side='right'caption='[[1kk9]], [[Resolution\|resolution]] 2.10Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1kk9]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_coli"_migula_1895 "bacillus coli" migula 1895]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1KK9 OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1KK9 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1kk9]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_coli"_migula_1895 "bacillus coli" migula 1895]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1KK9 OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=1KK9 FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">ycio ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 "Bacillus coli" Migula 1895])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">ycio ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 "Bacillus coli" Migula 1895])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1kk9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1kk9 OCA], [http://pdbe.org/1kk9 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1kk9 RCSB], [http://www.ebi.ac.uk/pdbsum/1kk9 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1kk9 ProSAT], [http://www.topsan.org/Proteins/BSGI/1kk9 TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=1kk9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1kk9 OCA], [http://pdbe.org/1kk9 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1kk9 RCSB], [http://www.ebi.ac.uk/pdbsum/1kk9 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1kk9 ProSAT], [http://www.topsan.org/Proteins/BSGI/1kk9 TOPSAN]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 13:		Line 13:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/kk/1kk9_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/kk/1kk9_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
Line 22:		Line 22:
	</StructureSection>		</StructureSection>
	[[Category: Bacillus coli migula 1895]]		[[Category: Bacillus coli migula 1895]]
		+	[[Category: Large Structures]]
	[[Category: Structural genomic]]		[[Category: Structural genomic]]
	[[Category: Cygler, M]]		[[Category: Cygler, M]]

OCA at 07:12, 11 October 2017

OCA — Wed, 11 Oct 2017 07:12:43 GMT

←Older revision		Revision as of 07:12, 11 October 2017
Line 1:		Line 1:
		+
	==CRYSTAL STRUCTURE OF E. COLI YCIO==		==CRYSTAL STRUCTURE OF E. COLI YCIO==
	<StructureSection load='1kk9' size='340' side='right' caption='[[1kk9]], [[Resolution\|resolution]] 2.10Å' scene=''>		<StructureSection load='1kk9' size='340' side='right' caption='[[1kk9]], [[Resolution\|resolution]] 2.10Å' scene=''>
Line 6:		Line 7:
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">ycio ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 "Bacillus coli" Migula 1895])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">ycio ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 "Bacillus coli" Migula 1895])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1kk9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1kk9 OCA], [http://pdbe.org/1kk9 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1kk9 RCSB], [http://www.ebi.ac.uk/pdbsum/1kk9 PDBsum], [http://www.topsan.org/Proteins/BSGI/1kk9 TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1kk9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1kk9 OCA], [http://pdbe.org/1kk9 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1kk9 RCSB], [http://www.ebi.ac.uk/pdbsum/1kk9 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1kk9 ProSAT], [http://www.topsan.org/Proteins/BSGI/1kk9 TOPSAN]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 16:		Line 17:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1kk9 ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	__TOC__		__TOC__

OCA at 14:37, 11 September 2015

OCA — Fri, 11 Sep 2015 14:37:07 GMT

←Older revision		Revision as of 14:37, 11 September 2015
Line 2:		Line 2:
	<StructureSection load='1kk9' size='340' side='right' caption='[[1kk9]], [[Resolution\|resolution]] 2.10Å' scene=''>		<StructureSection load='1kk9' size='340' side='right' caption='[[1kk9]], [[Resolution\|resolution]] 2.10Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1kk9]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Escherichia_coli Escherichia~~ coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1KK9 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1KK9 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1kk9]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_coli"_migula_1895 "bacillus coli" migula 1895]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1KK9 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1KK9 FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">ycio ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 ~~Escherichia~~ coli])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">ycio ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 "Bacillus coli" Migula 1895])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1kk9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1kk9 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1kk9 RCSB], [http://www.ebi.ac.uk/pdbsum/1kk9 PDBsum], [http://www.topsan.org/Proteins/BSGI/1kk9 TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1kk9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1kk9 OCA], [http://pdbe.org/1kk9 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1kk9 RCSB], [http://www.ebi.ac.uk/pdbsum/1kk9 PDBsum], [http://www.topsan.org/Proteins/BSGI/1kk9 TOPSAN]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 20:		Line 20:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Escherichia~~ coli]]	+	[[Category: Bacillus coli migula 1895]]
	[[Category: Structural genomic]]		[[Category: Structural genomic]]
	[[Category: Cygler, M]]		[[Category: Cygler, M]]

OCA at 17:50, 25 December 2014

OCA — Thu, 25 Dec 2014 17:50:01 GMT

←Older revision		Revision as of 17:50, 25 December 2014
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1kk9]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1KK9 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1KK9 FirstGlance]. <br>		<table><tr><td colspan='2'>[[1kk9]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1KK9 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1KK9 FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>	+	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">ycio ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 Escherichia coli])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">ycio ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 Escherichia coli])</td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1kk9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1kk9 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1kk9 RCSB], [http://www.ebi.ac.uk/pdbsum/1kk9 PDBsum], [http://www.topsan.org/Proteins/BSGI/1kk9 TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1kk9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1kk9 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1kk9 RCSB], [http://www.ebi.ac.uk/pdbsum/1kk9 PDBsum], [http://www.topsan.org/Proteins/BSGI/1kk9 TOPSAN]</span></td></tr>
-	<table>	+	</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 21:		Line 21:
	</StructureSection>		</StructureSection>
	[[Category: Escherichia coli]]		[[Category: Escherichia coli]]
-	[[Category: ~~BSGI, Montreal-Kingston Bacterial~~ Structural ~~Genomics Initiative.~~]]	+	[[Category: Structural genomic]]
-	[[Category: Cygler, M.]]	+	[[Category: Cygler, M]]
-	[[Category: Huang, L W.]]	+	[[Category: Huang, L W]]
-	[[Category: Jia, J.]]	+	[[Category: Jia, J]]
-	[[Category: Lunin, V V.]]	+	[[Category: Lunin, V V]]
-	[[Category: Matte, A.]]	+	[[Category: Matte, A]]
-	[[Category: Sauve, V.]]	+	[[Category: Sauve, V]]
	[[Category: Alpha/beta open twisted sheet]]		[[Category: Alpha/beta open twisted sheet]]
	[[Category: Bsgi]]		[[Category: Bsgi]]
-	[[Category: Montreal-kingston bacterial structural genomics initiative]]
-	[[Category: Structural genomic]]
	[[Category: Unknown function]]		[[Category: Unknown function]]

OCA at 12:41, 28 September 2014

OCA — Sun, 28 Sep 2014 12:41:53 GMT

←Older revision		Revision as of 12:41, 28 September 2014
Line 1:		Line 1:
-	~~[[Image:1kk9.png\|left\|200px]]~~	+	==CRYSTAL STRUCTURE OF E. COLI YCIO==
-		+	<StructureSection load='1kk9' size='340' side='right' caption='[[1kk9]], [[Resolution\|resolution]] 2.10Å' scene=''>
-	~~{{STRUCTURE_1kk9\| PDB=1kk9 \| SCENE= }}~~	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[1kk9]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1KK9 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1KK9 FirstGlance]. <br>
-	===CRYSTAL STRUCTURE OF E. COLI YCIO===	+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene><br>
-		+	<tr><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-		+	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">ycio ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 Escherichia coli])</td></tr>
-	==~~About this Structure~~==	+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1kk9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1kk9 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1kk9 RCSB], [http://www.ebi.ac.uk/pdbsum/1kk9 PDBsum], [http://www.topsan.org/Proteins/BSGI/1kk9 TOPSAN]</span></td></tr>
-	[[1kk9]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1KK9 OCA].	+	<table>
-		+	== Evolutionary Conservation ==
-	==~~Reference~~==	+	[[Image:Consurf_key_small.gif\|200px\|right]]
-	<~~ref group~~="~~xtra~~">~~PMID~~:~~012211024~~</~~ref~~><~~references group~~="~~xtra~~"/>	+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/kk/1kk9_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	__TOC__
		+	</StructureSection>
	[[Category: Escherichia coli]]		[[Category: Escherichia coli]]
	[[Category: BSGI, Montreal-Kingston Bacterial Structural Genomics Initiative.]]		[[Category: BSGI, Montreal-Kingston Bacterial Structural Genomics Initiative.]]

OCA: Protected "1kk9" [edit=sysop:move=sysop]

OCA — Wed, 05 Dec 2012 21:03:07 GMT

Protected "1kk9" [edit=sysop:move=sysop]

←Older revision

Revision as of 21:03, 5 December 2012

OCA at 21:03, 5 December 2012

OCA — Wed, 05 Dec 2012 21:03:04 GMT

←Older revision		Revision as of 21:03, 5 December 2012
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-	{{Seed}}
	[[Image:1kk9.png\|left\|200px]]		[[Image:1kk9.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_1kk9", creates the "Structure Box" on the page.
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	{{STRUCTURE_1kk9\| PDB=1kk9 \| SCENE= }}		{{STRUCTURE_1kk9\| PDB=1kk9 \| SCENE= }}

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	==About this Structure==		==About this Structure==
-	~~1KK9~~ is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1KK9 OCA].	+	[[1kk9]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1KK9 OCA].

	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~12211024~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:012211024</ref><references group="xtra"/>
	[[Category: Escherichia coli]]		[[Category: Escherichia coli]]
	[[Category: BSGI, Montreal-Kingston Bacterial Structural Genomics Initiative.]]		[[Category: BSGI, Montreal-Kingston Bacterial Structural Genomics Initiative.]]
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	[[Category: Montreal-kingston bacterial structural genomics initiative]]		[[Category: Montreal-kingston bacterial structural genomics initiative]]
	[[Category: Structural genomic]]		[[Category: Structural genomic]]
-		+	[[Category: Unknown function]]
-	~~''Page seeded by~~ [~~http~~:~~//oca.weizmann.ac.il/oca OCA~~ ] ~~on Wed Feb 18 00:40:43 2009''~~	+

OCA at 22:40, 17 February 2009

OCA — Tue, 17 Feb 2009 22:40:44 GMT

←Older revision		Revision as of 22:40, 17 February 2009
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	==Reference==		==Reference==
-	~~Crystal structure of the YciO protein from Escherichia coli., Jia J, Lunin VV, Sauve V, Huang LW, Matte A, Cygler M, Proteins. 2002 Oct 1;49(1):139-41.~~ PMID:~~[http:~~//~~www.ncbi.nlm.nih.gov/pubmed/12211024 12211024]~~	+	<ref group="xtra">PMID:12211024</ref><references group="xtra"/>
	[[Category: Escherichia coli]]		[[Category: Escherichia coli]]
	[[Category: BSGI, Montreal-Kingston Bacterial Structural Genomics Initiative.]]		[[Category: BSGI, Montreal-Kingston Bacterial Structural Genomics Initiative.]]
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	[[Category: Structural genomic]]		[[Category: Structural genomic]]

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on ~~Sun Nov 16 16~~:13:~~45 2008~~''	+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Feb 18 00:40:43 2009''

OCA at 14:13, 16 November 2008

OCA — Sun, 16 Nov 2008 14:13:46 GMT

←Older revision		Revision as of 14:13, 16 November 2008
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	==About this Structure==		==About this Structure==
-	1KK9 is a ~~[[Single protein]]~~ structure of sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1KK9 OCA].	+	1KK9 is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1KK9 OCA].

	==Reference==		==Reference==
	Crystal structure of the YciO protein from Escherichia coli., Jia J, Lunin VV, Sauve V, Huang LW, Matte A, Cygler M, Proteins. 2002 Oct 1;49(1):139-41. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/12211024 12211024]		Crystal structure of the YciO protein from Escherichia coli., Jia J, Lunin VV, Sauve V, Huang LW, Matte A, Cygler M, Proteins. 2002 Oct 1;49(1):139-41. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/12211024 12211024]
	[[Category: Escherichia coli]]		[[Category: Escherichia coli]]
-	[[Category: Single protein]]
	[[Category: BSGI, Montreal-Kingston Bacterial Structural Genomics Initiative.]]		[[Category: BSGI, Montreal-Kingston Bacterial Structural Genomics Initiative.]]
	[[Category: Cygler, M.]]		[[Category: Cygler, M.]]
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	[[Category: Structural genomic]]		[[Category: Structural genomic]]

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on ~~Wed Jul 2 10~~:27:53 2008''	+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Nov 16 16:13:45 2008''