1ksd - Revision history

OCA at 09:03, 16 August 2023

OCA — Wed, 16 Aug 2023 09:03:50 GMT

←Older revision		Revision as of 09:03, 16 August 2023
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	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1ksd]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Nasutitermes_takasagoensis Nasutitermes takasagoensis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1KSD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1KSD FirstGlance]. <br>		<table><tr><td colspan='2'>[[1ksd]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Nasutitermes_takasagoensis Nasutitermes takasagoensis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1KSD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1KSD FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.6Å</td></tr>
-	<tr id='~~related~~'><td class="sblockLbl"><b>[[~~Related_structure~~\|~~Related~~:]]</b></td><td class="sblockDat"~~><div style='overflow: auto; max-height: 3em;'>[[1ks8\|1ks8]], [[1ksc\|1ksc]]</div></td></tr>~~	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr>
-	~~<tr~~ id~~='activity'><td class~~="~~sblockLbl~~"><~~b>Activity:</b></td><td class~~=~~"sblockDat"><span class~~=~~'plainlinks~~'>~~[https://en.wikipedia.org/wiki/Cellulase Cellulase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.4 3.2.1.4]~~ </~~span~~></td></tr>	+
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1ksd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ksd OCA], [https://pdbe.org/1ksd PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1ksd RCSB], [https://www.ebi.ac.uk/pdbsum/1ksd PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1ksd ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1ksd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ksd OCA], [https://pdbe.org/1ksd PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1ksd RCSB], [https://www.ebi.ac.uk/pdbsum/1ksd PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1ksd ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/O77044_9NEOP O77044_9NEOP]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Cellulase]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
	[[Category: Nasutitermes takasagoensis]]		[[Category: Nasutitermes takasagoensis]]
-	[[Category: Guarino~~, L A~~]]	+	[[Category: Guarino LA]]
-	[[Category: Khademi, S]]	+	[[Category: Khademi S]]
-	[[Category: Meyer~~, E F~~]]	+	[[Category: Meyer EF]]
-	[[Category: Tokuda, G]]	+	[[Category: Tokuda G]]
-	[[Category: Watanabe, H]]	+	[[Category: Watanabe H]]
-	~~[[Category: Endoglucanase]]~~	+
-	~~[[Category: Family 9]]~~	+
-	~~[[Category: Glycosyl hydrolase]]~~	+
-	~~[[Category: Hydrolase]]~~	+
-	~~[[Category: Termite~~]]	+

OCA at 06:35, 18 August 2021

OCA — Wed, 18 Aug 2021 06:35:05 GMT

←Older revision		Revision as of 06:35, 18 August 2021
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	<StructureSection load='1ksd' size='340' side='right'caption='[[1ksd]], [[Resolution\|resolution]] 1.60Å' scene=''>		<StructureSection load='1ksd' size='340' side='right'caption='[[1ksd]], [[Resolution\|resolution]] 1.60Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1ksd]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Nasutitermes_takasagoensis Nasutitermes takasagoensis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1KSD OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1KSD FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1ksd]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Nasutitermes_takasagoensis Nasutitermes takasagoensis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1KSD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1KSD FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr>
-	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1ks8\|1ks8]], [[1ksc\|1ksc]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1ks8\|1ks8]], [[1ksc\|1ksc]]</div></td></tr>
-	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://en.wikipedia.org/wiki/Cellulase Cellulase], with EC number [~~http~~://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.4 3.2.1.4] </span></td></tr>	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Cellulase Cellulase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.4 3.2.1.4] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1ksd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ksd OCA], [~~http~~://pdbe.org/1ksd PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=1ksd RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/1ksd PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=1ksd ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1ksd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ksd OCA], [https://pdbe.org/1ksd PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1ksd RCSB], [https://www.ebi.ac.uk/pdbsum/1ksd PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1ksd ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==

OCA at 12:32, 13 November 2019

OCA — Wed, 13 Nov 2019 12:32:21 GMT

←Older revision		Revision as of 12:32, 13 November 2019
Line 1:		Line 1:

	==The structure of Endoglucanase from termite, Nasutitermes takasagoensis, at pH 6.5.==		==The structure of Endoglucanase from termite, Nasutitermes takasagoensis, at pH 6.5.==
-	<StructureSection load='1ksd' size='340' side='right' caption='[[1ksd]], [[Resolution\|resolution]] 1.60Å' scene=''>	+	<StructureSection load='1ksd' size='340' side='right'caption='[[1ksd]], [[Resolution\|resolution]] 1.60Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1ksd]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Nasutitermes_takasagoensis Nasutitermes takasagoensis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1KSD OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1KSD FirstGlance]. <br>		<table><tr><td colspan='2'>[[1ksd]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Nasutitermes_takasagoensis Nasutitermes takasagoensis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1KSD OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1KSD FirstGlance]. <br>
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	</div>		</div>
	<div class="pdbe-citations 1ksd" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 1ksd" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[Glucanase 3D structures\|Glucanase 3D structures]]
	== References ==		== References ==
	<references/>		<references/>
Line 33:		Line 36:
	</StructureSection>		</StructureSection>
	[[Category: Cellulase]]		[[Category: Cellulase]]
		+	[[Category: Large Structures]]
	[[Category: Nasutitermes takasagoensis]]		[[Category: Nasutitermes takasagoensis]]
	[[Category: Guarino, L A]]		[[Category: Guarino, L A]]

OCA at 21:42, 24 January 2018

OCA — Wed, 24 Jan 2018 21:42:45 GMT

←Older revision		Revision as of 21:42, 24 January 2018
Line 1:		Line 1:
		+
	==The structure of Endoglucanase from termite, Nasutitermes takasagoensis, at pH 6.5.==		==The structure of Endoglucanase from termite, Nasutitermes takasagoensis, at pH 6.5.==
	<StructureSection load='1ksd' size='340' side='right' caption='[[1ksd]], [[Resolution\|resolution]] 1.60Å' scene=''>		<StructureSection load='1ksd' size='340' side='right' caption='[[1ksd]], [[Resolution\|resolution]] 1.60Å' scene=''>
Line 6:		Line 7:
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1ks8\|1ks8]], [[1ksc\|1ksc]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1ks8\|1ks8]], [[1ksc\|1ksc]]</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Cellulase Cellulase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.4 3.2.1.4] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Cellulase Cellulase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.4 3.2.1.4] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1ksd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ksd OCA], [http://pdbe.org/1ksd PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1ksd RCSB], [http://www.ebi.ac.uk/pdbsum/1ksd PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1ksd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ksd OCA], [http://pdbe.org/1ksd PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1ksd RCSB], [http://www.ebi.ac.uk/pdbsum/1ksd PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1ksd ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 12:		Line 13:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ks/1ksd_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ks/1ksd_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
Line 27:		Line 28:
	</div>		</div>
	<div class="pdbe-citations 1ksd" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 1ksd" style="background-color:#fffaf0;"></div>
-
-	==See Also==
-	*[[Glucanase\|Glucanase]]
	== References ==		== References ==
	<references/>		<references/>

OCA at 08:24, 9 February 2016

OCA — Tue, 09 Feb 2016 08:24:46 GMT

←Older revision		Revision as of 08:24, 9 February 2016
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	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1ksd ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 20:25, 10 September 2015

OCA — Thu, 10 Sep 2015 20:25:52 GMT

←Older revision		Revision as of 20:25, 10 September 2015
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	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1ks8\|1ks8]], [[1ksc\|1ksc]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1ks8\|1ks8]], [[1ksc\|1ksc]]</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Cellulase Cellulase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.4 3.2.1.4] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Cellulase Cellulase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.4 3.2.1.4] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1ksd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ksd OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1ksd RCSB], [http://www.ebi.ac.uk/pdbsum/1ksd PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1ksd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ksd OCA], [http://pdbe.org/1ksd PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1ksd RCSB], [http://www.ebi.ac.uk/pdbsum/1ksd PDBsum]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 26:		Line 26:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 1ksd" style="background-color:#fffaf0;"></div>

	==See Also==		==See Also==

OCA at 17:00, 5 January 2015

OCA — Mon, 05 Jan 2015 17:00:08 GMT

←Older revision		Revision as of 17:00, 5 January 2015
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1ksd]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Nasutitermes_takasagoensis Nasutitermes takasagoensis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1KSD OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1KSD FirstGlance]. <br>		<table><tr><td colspan='2'>[[1ksd]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Nasutitermes_takasagoensis Nasutitermes takasagoensis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1KSD OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1KSD FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1ks8\|1ks8]], [[1ksc\|1ksc]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1ks8\|1ks8]], [[1ksc\|1ksc]]</td></tr>
-	<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Cellulase Cellulase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.4 3.2.1.4] </span></td></tr>	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Cellulase Cellulase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.4 3.2.1.4] </span></td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1ksd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ksd OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1ksd RCSB], [http://www.ebi.ac.uk/pdbsum/1ksd PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1ksd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ksd OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1ksd RCSB], [http://www.ebi.ac.uk/pdbsum/1ksd PDBsum]</span></td></tr>
-	<table>	+	</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
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	[[Category: Cellulase]]		[[Category: Cellulase]]
	[[Category: Nasutitermes takasagoensis]]		[[Category: Nasutitermes takasagoensis]]
-	[[Category: Guarino, L A.]]	+	[[Category: Guarino, L A]]
-	[[Category: Khademi, S.]]	+	[[Category: Khademi, S]]
-	[[Category: Meyer, E F.]]	+	[[Category: Meyer, E F]]
-	[[Category: Tokuda, G.]]	+	[[Category: Tokuda, G]]
-	[[Category: Watanabe, H~~.]]~~	+	[[Category: Watanabe, H]]
-	~~[[Category: Cellulase~~]]	+
	[[Category: Endoglucanase]]		[[Category: Endoglucanase]]
	[[Category: Family 9]]		[[Category: Family 9]]
	[[Category: Glycosyl hydrolase]]		[[Category: Glycosyl hydrolase]]
	[[Category: Hydrolase]]		[[Category: Hydrolase]]
-	[[Category: Nasutitermes takasagoensis]]
	[[Category: Termite]]		[[Category: Termite]]

OCA at 16:13, 28 September 2014

OCA — Sun, 28 Sep 2014 16:13:03 GMT

←Older revision		Revision as of 16:13, 28 September 2014
Line 1:		Line 1:
-	[[~~Image:~~1ksd.~~png~~\|~~left~~\|200px]]	+	==The structure of Endoglucanase from termite, Nasutitermes takasagoensis, at pH 6.5.==
		+	<StructureSection load='1ksd' size='340' side='right' caption='[[1ksd]], [[Resolution\|resolution]] 1.60Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[1ksd]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Nasutitermes_takasagoensis Nasutitermes takasagoensis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1KSD OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1KSD FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene><br>
		+	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1ks8\|1ks8]], [[1ksc\|1ksc]]</td></tr>
		+	<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Cellulase Cellulase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.4 3.2.1.4] </span></td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1ksd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ksd OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1ksd RCSB], [http://www.ebi.ac.uk/pdbsum/1ksd PDBsum]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ks/1ksd_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Contrary to conventional wisdom, it has been shown recently that termites do not necessarily depend on symbiotic bacteria to process cellulose. They secrete their own cellulases, mainly endo-beta-1,4-glucanase and beta-1,4-glucosidase. Here, the first structure of an endogenous endoglucanase from the higher termite Nasutitermes takasagoensis (NtEgl) is reported at 1.40 A resolution. NtEgl has the general folding of an (alpha/alpha)(6) barrel, which is a common folding pattern for glycosyl hydrolase family 9. Three-dimensional structural analysis shows that the conserved Glu412 is the catalytic acid/base residue and the conserved Asp54 or Asp57 is the base. The enzyme has a Ca(2+)-binding site near its substrate-binding cleft. Comparison between the structure of the Ca(2+)-free enzyme produced by reducing the pH of the soaked crystal from 5.6 (the pH of optimum enzyme activity) to 2.5 with that of the Ca(2+)-bound enzyme did not show significant differences in the locations of the C(alpha) atoms. The main differences are in the conformation of the residue side chains ligating the Ca(2+) ion. The overall structure of NtEgl at pH 6.5 is similar to that at pH 5.6. The major change observed was in the conformation of the side chain of the catalytic acid/base Glu412, which rotates from a hydrophobic cavity to a relatively hydrophilic environment. This side-chain displacement may decrease the enzyme activity at higher pH.

-	~~{{STRUCTURE_1ksd\| PDB=1ksd \| SCENE= }}~~	+	Structure of an endoglucanase from termite, Nasutitermes takasagoensis.,Khademi S, Guarino LA, Watanabe H, Tokuda G, Meyer EF Acta Crystallogr D Biol Crystallogr. 2002 Apr;58(Pt 4):653-9. Epub 2002, Mar 22. PMID:11914490<ref>PMID:11914490</ref>

-	~~===The structure of Endoglucanase from termite~~, ~~Nasutitermes takasagoensis, at pH 6.5.===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_11914490}}~~	+
-		+
-	~~==About this Structure==~~	+
-	~~[[1ksd]] is~~ a ~~1 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org/wiki/Nasutitermes_takasagoensis Nasutitermes takasagoensis]~~. ~~Full crystallographic information is available from [http:~~/~~/oca.weizmann.ac.il/oca-bin/ocashort?id=1KSD OCA].~~	+

	==See Also==		==See Also==
	*[[Glucanase\|Glucanase]]		*[[Glucanase\|Glucanase]]
-		+	== References ==
-	==~~Reference~~==	+	<references/>
-	<~~ref group="xtra">PMID:011914490<~~/~~ref~~><~~references group="xtra"~~/>	+	__TOC__
		+	</StructureSection>
	[[Category: Cellulase]]		[[Category: Cellulase]]
	[[Category: Nasutitermes takasagoensis]]		[[Category: Nasutitermes takasagoensis]]

OCA at 13:15, 20 October 2012

OCA — Sat, 20 Oct 2012 13:15:54 GMT

←Older revision		Revision as of 13:15, 20 October 2012
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	==About this Structure==		==About this Structure==
-	[[1ksd]] is a 1 chain structure ~~of [[Glucanase]]~~ with sequence from [http://en.wikipedia.org/wiki/Nasutitermes_takasagoensis Nasutitermes takasagoensis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1KSD OCA].	+	[[1ksd]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Nasutitermes_takasagoensis Nasutitermes takasagoensis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1KSD OCA].

	==See Also==		==See Also==

OCA: Protected "1ksd" [edit=sysop:move=sysop]

OCA — Thu, 26 Jul 2012 11:25:17 GMT

Protected "1ksd" [edit=sysop:move=sysop]

←Older revision

Revision as of 11:25, 26 July 2012