1kur - Revision history

OCA at 06:36, 18 August 2021

OCA — Wed, 18 Aug 2021 06:36:01 GMT

←Older revision		Revision as of 06:36, 18 August 2021
Line 4:		Line 4:
	<StructureSection load='1kur' size='340' side='right'caption='[[1kur]]' scene=''>		<StructureSection load='1kur' size='340' side='right'caption='[[1kur]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1KUR FirstGlance]. <br>	+	<table><tr><td colspan='2'>For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1KUR FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1kur FirstGlance], [~~http~~://www.ebi.ac.uk/pdbsum/1kur PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=1kur ProSAT]</span></td></tr>	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1kur FirstGlance], [https://www.ebi.ac.uk/pdbsum/1kur PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1kur ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 12:13, 13 November 2019

OCA — Wed, 13 Nov 2019 12:13:23 GMT

←Older revision		Revision as of 12:13, 13 November 2019
Line 2:		Line 2:

	==THEORETICAL MODEL OF THE ALLERGEN JUN A 3 FROM MOUNTAIN CEDAR POLLEN==		==THEORETICAL MODEL OF THE ALLERGEN JUN A 3 FROM MOUNTAIN CEDAR POLLEN==
-	<StructureSection load='1kur' size='340' side='right' caption='[[1kur]]' scene=''>	+	<StructureSection load='1kur' size='340' side='right'caption='[[1kur]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1KUR FirstGlance]. <br>		<table><tr><td colspan='2'>For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1KUR FirstGlance]. <br>
Line 21:		Line 21:
	</StructureSection>		</StructureSection>
	[[Category: Theoretical Model]]		[[Category: Theoretical Model]]
		+	[[Category: Large Structures]]
	[[Category: Braun, W]]		[[Category: Braun, W]]
	[[Category: Brooks, E G]]		[[Category: Brooks, E G]]

OCA at 21:23, 24 January 2018

OCA — Wed, 24 Jan 2018 21:23:09 GMT

←Older revision		Revision as of 21:23, 24 January 2018
Line 5:		Line 5:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1KUR FirstGlance]. <br>		<table><tr><td colspan='2'>For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1KUR FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1kur FirstGlance], [http://www.ebi.ac.uk/pdbsum/1kur PDBsum]</span></td></tr>	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1kur FirstGlance], [http://www.ebi.ac.uk/pdbsum/1kur PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1kur ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 09:12, 11 February 2016

OCA — Thu, 11 Feb 2016 09:12:14 GMT

←Older revision		Revision as of 09:12, 11 February 2016
Line 1:		Line 1:
		+	{{Theoretical_model}}
		+
	==THEORETICAL MODEL OF THE ALLERGEN JUN A 3 FROM MOUNTAIN CEDAR POLLEN==		==THEORETICAL MODEL OF THE ALLERGEN JUN A 3 FROM MOUNTAIN CEDAR POLLEN==
	<StructureSection load='1kur' size='340' side='right' caption='[[1kur]]' scene=''>		<StructureSection load='1kur' size='340' side='right' caption='[[1kur]]' scene=''>
Line 18:		Line 20:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Theoretical Model]]
	[[Category: Braun, W]]		[[Category: Braun, W]]
	[[Category: Brooks, E G]]		[[Category: Brooks, E G]]

OCA at 16:42, 11 September 2015

OCA — Fri, 11 Sep 2015 16:42:17 GMT

←Older revision		Revision as of 16:42, 11 September 2015
Line 13:		Line 13:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 1kur" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>

OCA at 15:33, 5 January 2015

OCA — Mon, 05 Jan 2015 15:33:38 GMT

←Older revision		Revision as of 15:33, 5 January 2015
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1KUR FirstGlance]. <br>		<table><tr><td colspan='2'>For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1KUR FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1kur FirstGlance], [http://www.ebi.ac.uk/pdbsum/1kur PDBsum]</span></td></tr>	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1kur FirstGlance], [http://www.ebi.ac.uk/pdbsum/1kur PDBsum]</span></td></tr>
-	<table>	+	</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==

OCA at 13:11, 28 September 2014

OCA — Sun, 28 Sep 2014 13:11:49 GMT

←Older revision		Revision as of 13:11, 28 September 2014
Line 1:		Line 1:
-	~~{{Theoretical_model}}~~	+	==THEORETICAL MODEL OF THE ALLERGEN JUN A 3 FROM MOUNTAIN CEDAR POLLEN==
		+	<StructureSection load='1kur' size='340' side='right' caption='[[1kur]]' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1KUR FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1kur FirstGlance], [http://www.ebi.ac.uk/pdbsum/1kur PDBsum]</span></td></tr>
		+	<table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	The Jun a 3 protein from mountain cedar (Juniperus ashei) pollen, a member of group 5 of the family of plant pathogenesis-related proteins (PR-proteins), reacts with serum IgE from patients with cedar hypersensitivity. We used the crystal structures of two other proteins of this group, thaumatin and an antifungal protein from tobacco, both approximately 50% identical in sequence to Jun a 3, as templates to build homology models for the allergen. The in-house programs EXDIS and FANTOM were used to extract distance and dihedral angle constraints from the Protein Data Bank files and determine energy-minimized structures. The mean backbone deviations for the energy-refined model structures from either of the templates is <1 A, their conformational energies are low, and their stereochemical properties (determined with PROCHECK) are acceptable. The circular dichroism spectrum of Jun a 3 is consistent with the postulated beta-sheet core. Tryptic fragments of Jun a 3 that reacted with IgE from allergic patients all mapped to one helical/loop surface of the models. The Jun a 3 models have features common to aerosol allergens from completely different protein families, suggesting that tertiary structural elements may mediate the triggering of an allergic response.

-	~~[[Image~~:~~1kur~~.~~png\|left\|200px]]~~	+	Homology modeling and characterization of IgE binding epitopes of mountain cedar allergen Jun a 3.,Soman KV, Midoro-Horiuti T, Ferreon JC, Goldblum RM, Brooks EG, Kurosky A, Braun W, Schein CH Biophys J. 2000 Sep;79(3):1601-9. PMID:10969020<ref>PMID:10969020</ref>

-	~~{{STRUCTURE_1kur\| PDB=1kur \| SCENE= }}~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	==~~=THEORETICAL MODEL OF THE ALLERGEN JUN A 3 FROM MOUNTAIN CEDAR POLLEN===~~	+	== References ==
-		+	<references/>
-	~~{{ABSTRACT_PUBMED_10969020}}~~	+	__TOC__
-		+	</StructureSection>
-	~~==Reference~~==	+
-	<~~ref group="xtra">PMID:010969020<~~/~~ref~~><~~references group="xtra"~~/>	+
	[[Category: Braun, W]]		[[Category: Braun, W]]
	[[Category: Brooks, E G]]		[[Category: Brooks, E G]]

OCA: Protected "1kur" [edit=sysop:move=sysop]

OCA — Sun, 21 Oct 2012 08:53:14 GMT

Protected "1kur" [edit=sysop:move=sysop]

←Older revision

Revision as of 08:53, 21 October 2012

OCA at 08:53, 21 October 2012

OCA — Sun, 21 Oct 2012 08:53:12 GMT

←Older revision		Revision as of 08:53, 21 October 2012
Line 1:		Line 1:
	{{Theoretical_model}}		{{Theoretical_model}}
-	~~{{Seed}}~~	+
	[[Image:1kur.png\|left\|200px]]		[[Image:1kur.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_1kur", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_1kur\| PDB=1kur \| SCENE= }}		{{STRUCTURE_1kur\| PDB=1kur \| SCENE= }}

	===THEORETICAL MODEL OF THE ALLERGEN JUN A 3 FROM MOUNTAIN CEDAR POLLEN===		===THEORETICAL MODEL OF THE ALLERGEN JUN A 3 FROM MOUNTAIN CEDAR POLLEN===

-
-	<!--
-	The line below this paragraph, {{ABSTRACT_PUBMED_10969020}}, adds the Publication Abstract to the page
-	(as it appears on PubMed at http://www.pubmed.gov), where 10969020 is the PubMed ID number.
-	-->
	{{ABSTRACT_PUBMED_10969020}}		{{ABSTRACT_PUBMED_10969020}}
-
-	==About this Structure==
-	Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1KUR OCA].

	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~10969020~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:010969020</ref><references group="xtra"/>
	[[Category: Braun, W]]		[[Category: Braun, W]]
	[[Category: Brooks, E G]]		[[Category: Brooks, E G]]
Line 33:		Line 19:
	[[Category: Schein, C H]]		[[Category: Schein, C H]]
	[[Category: Soman, K V]]		[[Category: Soman, K V]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Apr 8 07:11:51 2010''

OCA at 04:11, 8 April 2010

OCA — Thu, 08 Apr 2010 04:11:52 GMT

←Older revision		Revision as of 04:11, 8 April 2010
Line 1:		Line 1:
-	~~'''Theoretical Model'''~~	+	{{Theoretical_model}}
		+	{{Seed}}
		+	[[Image:1kur.png\|left\|200px]]

-	The ~~entry 1KUR~~ is ~~a Theoretical Model titled 'THEORETICAL MODEL OF THE ALLERGEN JUN A 3 FROM MOUNTAIN CEDAR POLLEN'~~.	+	<!--
		+	The line below this paragraph, containing "STRUCTURE_1kur", creates the "Structure Box" on the page.
		+	You may change the PDB parameter (which sets the PDB file loaded into the applet)
		+	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
		+	or leave the SCENE parameter empty for the default display.
		+	-->
		+	{{STRUCTURE_1kur\| PDB=1kur \| SCENE= }}

-	~~[[Category:Theoretical Model]]~~	+	===THEORETICAL MODEL OF THE ALLERGEN JUN A 3 FROM MOUNTAIN CEDAR POLLEN===


-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on ~~Wed Jul 30 09~~:50:~~44 2008~~''	+	<!--
		+	The line below this paragraph, {{ABSTRACT_PUBMED_10969020}}, adds the Publication Abstract to the page
		+	(as it appears on PubMed at http://www.pubmed.gov), where 10969020 is the PubMed ID number.
		+	-->
		+	{{ABSTRACT_PUBMED_10969020}}
		+
		+	==About this Structure==
		+	Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1KUR OCA].
		+
		+	==Reference==
		+	<ref group="xtra">PMID:10969020</ref><references group="xtra"/>
		+	[[Category: Braun, W]]
		+	[[Category: Brooks, E G]]
		+	[[Category: Ferreon, J C]]
		+	[[Category: Goldblum, R M]]
		+	[[Category: Kurosky, A]]
		+	[[Category: Midoro-Horiuti, T]]
		+	[[Category: Schein, C H]]
		+	[[Category: Soman, K V]]
		+
		+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Apr 8 07:11:51 2010''