1l17 - Revision history

OCA at 08:44, 22 May 2024

OCA — Wed, 22 May 2024 08:44:19 GMT

←Older revision		Revision as of 08:44, 22 May 2024
Line 4:		Line 4:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1l17]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_virus_T4 Escherichia virus T4]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1L17 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1L17 FirstGlance]. <br>		<table><tr><td colspan='2'>[[1l17]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_virus_T4 Escherichia virus T4]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1L17 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1L17 FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1l17 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1l17 OCA], [https://pdbe.org/1l17 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1l17 RCSB], [https://www.ebi.ac.uk/pdbsum/1l17 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1l17 ProSAT]</span></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.7Å</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1l17 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1l17 OCA], [https://pdbe.org/1l17 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1l17 RCSB], [https://www.ebi.ac.uk/pdbsum/1l17 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1l17 ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==

OCA at 10:17, 24 November 2022

OCA — Thu, 24 Nov 2022 10:17:31 GMT

←Older revision		Revision as of 10:17, 24 November 2022
Line 3:		Line 3:
	<StructureSection load='1l17' size='340' side='right'caption='[[1l17]], [[Resolution\|resolution]] 1.70Å' scene=''>		<StructureSection load='1l17' size='340' side='right'caption='[[1l17]], [[Resolution\|resolution]] 1.70Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1l17]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Bpt4 Bpt4~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1L17 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1L17 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1l17]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_virus_T4 Escherichia virus T4]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1L17 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1L17 FirstGlance]. <br>
-	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[2lzm\|2lzm]], [[1l01\|1l01]], [[1l02\|1l02]], [[1l03\|1l03]], [[1l04\|1l04]], [[1l05\|1l05]], [[1l06\|1l06]], [[1l07\|1l07]], [[1l08\|1l08]], [[1l09\|1l09]], [[1l10\|1l10]], [[1l11\|1l11]], [[1l12\|1l12]], [[1l13\|1l13]], [[1l14\|1l14]], [[1l15\|1l15]], [[1l16\|1l16]], [[1l18\|1l18]], [[1l19\|1l19]], [[1l20\|1l20]], [[1l21\|1l21]], [[1l22\|1l22]], [[1l23\|1l23]], [[1l24\|1l24]], [[1l25\|1l25]], [[1l26\|1l26]], [[1l27\|1l27]], [[1l28\|1l28]], [[1l29\|1l29]], [[1l30\|1l30]], [[1l31\|1l31]], [[1l32\|1l32]], [[1l33\|1l33]], [[1l34\|1l34]], [[1l35\|1l35]], [[1l36\|1l36]]</div></td></tr>	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1l17 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1l17 OCA], [https://pdbe.org/1l17 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1l17 RCSB], [https://www.ebi.ac.uk/pdbsum/1l17 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1l17 ProSAT]</span></td></tr>
-	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Lysozyme Lysozyme], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.17 3.2.1.17] </span></td></tr>	+
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1l17 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1l17 OCA], [https://pdbe.org/1l17 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1l17 RCSB], [https://www.ebi.ac.uk/pdbsum/1l17 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1l17 ProSAT]</span></td></tr>	+
	</table>		</table>
	== Function ==		== Function ==
-	[[https://www.uniprot.org/uniprot/~~LYS_BPT4 LYS_BPT4~~]~~] Helps~~ to ~~release~~ the mature ~~phage~~ particles ~~from~~ the cell ~~wall by breaking~~ down the peptidoglycan.	+	[https://www.uniprot.org/uniprot/ENLYS_BPT4 ENLYS_BPT4] Endolysin with lysozyme activity that degrades host peptidoglycans and participates with the holin and spanin proteins in the sequential events which lead to the programmed host cell lysis releasing the mature viral particles. Once the holin has permeabilized the host cell membrane, the endolysin can reach the periplasm and break down the peptidoglycan layer.<ref>PMID:22389108</ref>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 36:		Line 34:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Bpt4~~]]	+	[[Category: Escherichia virus T4]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	~~[[Category: Lysozyme]]~~	+	[[Category: Dao-Pin S]]
-	[[Category: Dao-Pin, S]]	+	[[Category: Matsumura M]]
-	[[Category: Matsumura, M]]	+	[[Category: Matthews BW]]
-	[[Category: Matthews~~, B W~~]]	+

OCA at 06:38, 18 August 2021

OCA — Wed, 18 Aug 2021 06:38:15 GMT

←Older revision		Revision as of 06:38, 18 August 2021
Line 3:		Line 3:
	<StructureSection load='1l17' size='340' side='right'caption='[[1l17]], [[Resolution\|resolution]] 1.70Å' scene=''>		<StructureSection load='1l17' size='340' side='right'caption='[[1l17]], [[Resolution\|resolution]] 1.70Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1l17]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Bpt4 Bpt4]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1L17 OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1L17 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1l17]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Bpt4 Bpt4]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1L17 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1L17 FirstGlance]. <br>
-	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2lzm\|2lzm]], [[1l01\|1l01]], [[1l02\|1l02]], [[1l03\|1l03]], [[1l04\|1l04]], [[1l05\|1l05]], [[1l06\|1l06]], [[1l07\|1l07]], [[1l08\|1l08]], [[1l09\|1l09]], [[1l10\|1l10]], [[1l11\|1l11]], [[1l12\|1l12]], [[1l13\|1l13]], [[1l14\|1l14]], [[1l15\|1l15]], [[1l16\|1l16]], [[1l18\|1l18]], [[1l19\|1l19]], [[1l20\|1l20]], [[1l21\|1l21]], [[1l22\|1l22]], [[1l23\|1l23]], [[1l24\|1l24]], [[1l25\|1l25]], [[1l26\|1l26]], [[1l27\|1l27]], [[1l28\|1l28]], [[1l29\|1l29]], [[1l30\|1l30]], [[1l31\|1l31]], [[1l32\|1l32]], [[1l33\|1l33]], [[1l34\|1l34]], [[1l35\|1l35]], [[1l36\|1l36]]</td></tr>	+	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[2lzm\|2lzm]], [[1l01\|1l01]], [[1l02\|1l02]], [[1l03\|1l03]], [[1l04\|1l04]], [[1l05\|1l05]], [[1l06\|1l06]], [[1l07\|1l07]], [[1l08\|1l08]], [[1l09\|1l09]], [[1l10\|1l10]], [[1l11\|1l11]], [[1l12\|1l12]], [[1l13\|1l13]], [[1l14\|1l14]], [[1l15\|1l15]], [[1l16\|1l16]], [[1l18\|1l18]], [[1l19\|1l19]], [[1l20\|1l20]], [[1l21\|1l21]], [[1l22\|1l22]], [[1l23\|1l23]], [[1l24\|1l24]], [[1l25\|1l25]], [[1l26\|1l26]], [[1l27\|1l27]], [[1l28\|1l28]], [[1l29\|1l29]], [[1l30\|1l30]], [[1l31\|1l31]], [[1l32\|1l32]], [[1l33\|1l33]], [[1l34\|1l34]], [[1l35\|1l35]], [[1l36\|1l36]]</div></td></tr>
-	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://en.wikipedia.org/wiki/Lysozyme Lysozyme], with EC number [~~http~~://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.17 3.2.1.17] </span></td></tr>	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Lysozyme Lysozyme], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.17 3.2.1.17] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1l17 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1l17 OCA], [~~http~~://pdbe.org/1l17 PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=1l17 RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/1l17 PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=1l17 ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1l17 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1l17 OCA], [https://pdbe.org/1l17 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1l17 RCSB], [https://www.ebi.ac.uk/pdbsum/1l17 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1l17 ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[~~http~~://www.uniprot.org/uniprot/LYS_BPT4 LYS_BPT4]] Helps to release the mature phage particles from the cell wall by breaking down the peptidoglycan.	+	[[https://www.uniprot.org/uniprot/LYS_BPT4 LYS_BPT4]] Helps to release the mature phage particles from the cell wall by breaking down the peptidoglycan.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]

OCA at 12:41, 13 November 2019

OCA — Wed, 13 Nov 2019 12:41:03 GMT

←Older revision		Revision as of 12:41, 13 November 2019
Line 1:		Line 1:

	==HYDROPHOBIC STABILIZATION IN T4 LYSOZYME DETERMINED DIRECTLY BY MULTIPLE SUBSTITUTIONS OF ILE 3==		==HYDROPHOBIC STABILIZATION IN T4 LYSOZYME DETERMINED DIRECTLY BY MULTIPLE SUBSTITUTIONS OF ILE 3==
-	<StructureSection load='1l17' size='340' side='right' caption='[[1l17]], [[Resolution\|resolution]] 1.70Å' scene=''>	+	<StructureSection load='1l17' size='340' side='right'caption='[[1l17]], [[Resolution\|resolution]] 1.70Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1l17]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Bpt4 Bpt4]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1L17 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1L17 FirstGlance]. <br>		<table><tr><td colspan='2'>[[1l17]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Bpt4 Bpt4]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1L17 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1L17 FirstGlance]. <br>
Line 14:		Line 14:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/l1/1l17_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/l1/1l17_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
Line 37:		Line 37:
	</StructureSection>		</StructureSection>
	[[Category: Bpt4]]		[[Category: Bpt4]]
		+	[[Category: Large Structures]]
	[[Category: Lysozyme]]		[[Category: Lysozyme]]
	[[Category: Dao-Pin, S]]		[[Category: Dao-Pin, S]]
	[[Category: Matsumura, M]]		[[Category: Matsumura, M]]
	[[Category: Matthews, B W]]		[[Category: Matthews, B W]]

OCA at 06:41, 29 November 2017

OCA — Wed, 29 Nov 2017 06:41:40 GMT

←Older revision		Revision as of 06:41, 29 November 2017
Line 1:		Line 1:
		+
	==HYDROPHOBIC STABILIZATION IN T4 LYSOZYME DETERMINED DIRECTLY BY MULTIPLE SUBSTITUTIONS OF ILE 3==		==HYDROPHOBIC STABILIZATION IN T4 LYSOZYME DETERMINED DIRECTLY BY MULTIPLE SUBSTITUTIONS OF ILE 3==
	<StructureSection load='1l17' size='340' side='right' caption='[[1l17]], [[Resolution\|resolution]] 1.70Å' scene=''>		<StructureSection load='1l17' size='340' side='right' caption='[[1l17]], [[Resolution\|resolution]] 1.70Å' scene=''>
Line 5:		Line 6:
	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2lzm\|2lzm]], [[1l01\|1l01]], [[1l02\|1l02]], [[1l03\|1l03]], [[1l04\|1l04]], [[1l05\|1l05]], [[1l06\|1l06]], [[1l07\|1l07]], [[1l08\|1l08]], [[1l09\|1l09]], [[1l10\|1l10]], [[1l11\|1l11]], [[1l12\|1l12]], [[1l13\|1l13]], [[1l14\|1l14]], [[1l15\|1l15]], [[1l16\|1l16]], [[1l18\|1l18]], [[1l19\|1l19]], [[1l20\|1l20]], [[1l21\|1l21]], [[1l22\|1l22]], [[1l23\|1l23]], [[1l24\|1l24]], [[1l25\|1l25]], [[1l26\|1l26]], [[1l27\|1l27]], [[1l28\|1l28]], [[1l29\|1l29]], [[1l30\|1l30]], [[1l31\|1l31]], [[1l32\|1l32]], [[1l33\|1l33]], [[1l34\|1l34]], [[1l35\|1l35]], [[1l36\|1l36]]</td></tr>		</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2lzm\|2lzm]], [[1l01\|1l01]], [[1l02\|1l02]], [[1l03\|1l03]], [[1l04\|1l04]], [[1l05\|1l05]], [[1l06\|1l06]], [[1l07\|1l07]], [[1l08\|1l08]], [[1l09\|1l09]], [[1l10\|1l10]], [[1l11\|1l11]], [[1l12\|1l12]], [[1l13\|1l13]], [[1l14\|1l14]], [[1l15\|1l15]], [[1l16\|1l16]], [[1l18\|1l18]], [[1l19\|1l19]], [[1l20\|1l20]], [[1l21\|1l21]], [[1l22\|1l22]], [[1l23\|1l23]], [[1l24\|1l24]], [[1l25\|1l25]], [[1l26\|1l26]], [[1l27\|1l27]], [[1l28\|1l28]], [[1l29\|1l29]], [[1l30\|1l30]], [[1l31\|1l31]], [[1l32\|1l32]], [[1l33\|1l33]], [[1l34\|1l34]], [[1l35\|1l35]], [[1l36\|1l36]]</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Lysozyme Lysozyme], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.17 3.2.1.17] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Lysozyme Lysozyme], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.17 3.2.1.17] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1l17 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1l17 OCA], [http://pdbe.org/1l17 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1l17 RCSB], [http://www.ebi.ac.uk/pdbsum/1l17 PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1l17 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1l17 OCA], [http://pdbe.org/1l17 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1l17 RCSB], [http://www.ebi.ac.uk/pdbsum/1l17 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1l17 ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==

OCA at 10:29, 9 February 2016

OCA — Tue, 09 Feb 2016 10:29:58 GMT

←Older revision		Revision as of 10:29, 9 February 2016
Line 17:		Line 17:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1l17 ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 21:23, 10 September 2015

OCA — Thu, 10 Sep 2015 21:23:06 GMT

←Older revision		Revision as of 21:23, 10 September 2015
Line 2:		Line 2:
	<StructureSection load='1l17' size='340' side='right' caption='[[1l17]], [[Resolution\|resolution]] 1.70Å' scene=''>		<StructureSection load='1l17' size='340' side='right' caption='[[1l17]], [[Resolution\|resolution]] 1.70Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1l17]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Enterobacteria_phage_t4 Enterobacteria phage t4~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1L17 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1L17 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1l17]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Bpt4 Bpt4]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1L17 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1L17 FirstGlance]. <br>
	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2lzm\|2lzm]], [[1l01\|1l01]], [[1l02\|1l02]], [[1l03\|1l03]], [[1l04\|1l04]], [[1l05\|1l05]], [[1l06\|1l06]], [[1l07\|1l07]], [[1l08\|1l08]], [[1l09\|1l09]], [[1l10\|1l10]], [[1l11\|1l11]], [[1l12\|1l12]], [[1l13\|1l13]], [[1l14\|1l14]], [[1l15\|1l15]], [[1l16\|1l16]], [[1l18\|1l18]], [[1l19\|1l19]], [[1l20\|1l20]], [[1l21\|1l21]], [[1l22\|1l22]], [[1l23\|1l23]], [[1l24\|1l24]], [[1l25\|1l25]], [[1l26\|1l26]], [[1l27\|1l27]], [[1l28\|1l28]], [[1l29\|1l29]], [[1l30\|1l30]], [[1l31\|1l31]], [[1l32\|1l32]], [[1l33\|1l33]], [[1l34\|1l34]], [[1l35\|1l35]], [[1l36\|1l36]]</td></tr>		</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2lzm\|2lzm]], [[1l01\|1l01]], [[1l02\|1l02]], [[1l03\|1l03]], [[1l04\|1l04]], [[1l05\|1l05]], [[1l06\|1l06]], [[1l07\|1l07]], [[1l08\|1l08]], [[1l09\|1l09]], [[1l10\|1l10]], [[1l11\|1l11]], [[1l12\|1l12]], [[1l13\|1l13]], [[1l14\|1l14]], [[1l15\|1l15]], [[1l16\|1l16]], [[1l18\|1l18]], [[1l19\|1l19]], [[1l20\|1l20]], [[1l21\|1l21]], [[1l22\|1l22]], [[1l23\|1l23]], [[1l24\|1l24]], [[1l25\|1l25]], [[1l26\|1l26]], [[1l27\|1l27]], [[1l28\|1l28]], [[1l29\|1l29]], [[1l30\|1l30]], [[1l31\|1l31]], [[1l32\|1l32]], [[1l33\|1l33]], [[1l34\|1l34]], [[1l35\|1l35]], [[1l36\|1l36]]</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Lysozyme Lysozyme], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.17 3.2.1.17] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Lysozyme Lysozyme], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.17 3.2.1.17] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1l17 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1l17 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1l17 RCSB], [http://www.ebi.ac.uk/pdbsum/1l17 PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1l17 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1l17 OCA], [http://pdbe.org/1l17 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1l17 RCSB], [http://www.ebi.ac.uk/pdbsum/1l17 PDBsum]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 27:		Line 27:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 1l17" style="background-color:#fffaf0;"></div>

	==See Also==		==See Also==
Line 34:		Line 35:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Enterobacteria phage t4~~]]	+	[[Category: Bpt4]]
	[[Category: Lysozyme]]		[[Category: Lysozyme]]
	[[Category: Dao-Pin, S]]		[[Category: Dao-Pin, S]]
	[[Category: Matsumura, M]]		[[Category: Matsumura, M]]
	[[Category: Matthews, B W]]		[[Category: Matthews, B W]]

OCA at 06:16, 25 December 2014

OCA — Thu, 25 Dec 2014 06:16:22 GMT

←Older revision		Revision as of 06:16, 25 December 2014
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1l17]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Enterobacteria_phage_t4 Enterobacteria phage t4]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1L17 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1L17 FirstGlance]. <br>		<table><tr><td colspan='2'>[[1l17]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Enterobacteria_phage_t4 Enterobacteria phage t4]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1L17 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1L17 FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2lzm\|2lzm]], [[1l01\|1l01]], [[1l02\|1l02]], [[1l03\|1l03]], [[1l04\|1l04]], [[1l05\|1l05]], [[1l06\|1l06]], [[1l07\|1l07]], [[1l08\|1l08]], [[1l09\|1l09]], [[1l10\|1l10]], [[1l11\|1l11]], [[1l12\|1l12]], [[1l13\|1l13]], [[1l14\|1l14]], [[1l15\|1l15]], [[1l16\|1l16]], [[1l18\|1l18]], [[1l19\|1l19]], [[1l20\|1l20]], [[1l21\|1l21]], [[1l22\|1l22]], [[1l23\|1l23]], [[1l24\|1l24]], [[1l25\|1l25]], [[1l26\|1l26]], [[1l27\|1l27]], [[1l28\|1l28]], [[1l29\|1l29]], [[1l30\|1l30]], [[1l31\|1l31]], [[1l32\|1l32]], [[1l33\|1l33]], [[1l34\|1l34]], [[1l35\|1l35]], [[1l36\|1l36]]</td></tr>	+	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2lzm\|2lzm]], [[1l01\|1l01]], [[1l02\|1l02]], [[1l03\|1l03]], [[1l04\|1l04]], [[1l05\|1l05]], [[1l06\|1l06]], [[1l07\|1l07]], [[1l08\|1l08]], [[1l09\|1l09]], [[1l10\|1l10]], [[1l11\|1l11]], [[1l12\|1l12]], [[1l13\|1l13]], [[1l14\|1l14]], [[1l15\|1l15]], [[1l16\|1l16]], [[1l18\|1l18]], [[1l19\|1l19]], [[1l20\|1l20]], [[1l21\|1l21]], [[1l22\|1l22]], [[1l23\|1l23]], [[1l24\|1l24]], [[1l25\|1l25]], [[1l26\|1l26]], [[1l27\|1l27]], [[1l28\|1l28]], [[1l29\|1l29]], [[1l30\|1l30]], [[1l31\|1l31]], [[1l32\|1l32]], [[1l33\|1l33]], [[1l34\|1l34]], [[1l35\|1l35]], [[1l36\|1l36]]</td></tr>
-	<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Lysozyme Lysozyme], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.17 3.2.1.17] </span></td></tr>	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Lysozyme Lysozyme], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.17 3.2.1.17] </span></td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1l17 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1l17 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1l17 RCSB], [http://www.ebi.ac.uk/pdbsum/1l17 PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1l17 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1l17 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1l17 RCSB], [http://www.ebi.ac.uk/pdbsum/1l17 PDBsum]</span></td></tr>
-	<table>	+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/LYS_BPT4 LYS_BPT4]] Helps to release the mature phage particles from the cell wall by breaking down the peptidoglycan.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 34:		Line 36:
	[[Category: Enterobacteria phage t4]]		[[Category: Enterobacteria phage t4]]
	[[Category: Lysozyme]]		[[Category: Lysozyme]]
-	[[Category: Dao-Pin, S.]]	+	[[Category: Dao-Pin, S]]
-	[[Category: Matsumura, M.]]	+	[[Category: Matsumura, M]]
-	[[Category: Matthews, B W.]]	+	[[Category: Matthews, B W]]

OCA at 17:32, 28 September 2014

OCA — Sun, 28 Sep 2014 17:32:29 GMT

←Older revision		Revision as of 17:32, 28 September 2014
Line 1:		Line 1:
-	[[~~Image:~~1l17.~~png~~\|~~left~~\|200px]]	+	==HYDROPHOBIC STABILIZATION IN T4 LYSOZYME DETERMINED DIRECTLY BY MULTIPLE SUBSTITUTIONS OF ILE 3==
		+	<StructureSection load='1l17' size='340' side='right' caption='[[1l17]], [[Resolution\|resolution]] 1.70Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[1l17]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Enterobacteria_phage_t4 Enterobacteria phage t4]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1L17 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1L17 FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2lzm\|2lzm]], [[1l01\|1l01]], [[1l02\|1l02]], [[1l03\|1l03]], [[1l04\|1l04]], [[1l05\|1l05]], [[1l06\|1l06]], [[1l07\|1l07]], [[1l08\|1l08]], [[1l09\|1l09]], [[1l10\|1l10]], [[1l11\|1l11]], [[1l12\|1l12]], [[1l13\|1l13]], [[1l14\|1l14]], [[1l15\|1l15]], [[1l16\|1l16]], [[1l18\|1l18]], [[1l19\|1l19]], [[1l20\|1l20]], [[1l21\|1l21]], [[1l22\|1l22]], [[1l23\|1l23]], [[1l24\|1l24]], [[1l25\|1l25]], [[1l26\|1l26]], [[1l27\|1l27]], [[1l28\|1l28]], [[1l29\|1l29]], [[1l30\|1l30]], [[1l31\|1l31]], [[1l32\|1l32]], [[1l33\|1l33]], [[1l34\|1l34]], [[1l35\|1l35]], [[1l36\|1l36]]</td></tr>
		+	<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Lysozyme Lysozyme], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.17 3.2.1.17] </span></td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1l17 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1l17 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1l17 RCSB], [http://www.ebi.ac.uk/pdbsum/1l17 PDBsum]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/l1/1l17_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Replacing the isoleucine at amino-acid position three of bacteriophage T4 lysozyme causes changes in the thermodynamic stability of the protein that are directly related to the hydrophobicity of the substituted residue. Structural analysis confirms that the hydrophobic stabilization is proportional to the reduction of the surface area accessible to solvent on folding.

-	~~{{STRUCTURE_1l17\| PDB=1l17 \| SCENE= }}~~	+	Hydrophobic stabilization in T4 lysozyme determined directly by multiple substitutions of Ile 3.,Matsumura M, Becktel WJ, Matthews BW Nature. 1988 Aug 4;334(6181):406-10. PMID:3405287<ref>PMID:3405287</ref>

-	~~===HYDROPHOBIC STABILIZATION IN T4 LYSOZYME DETERMINED DIRECTLY BY MULTIPLE SUBSTITUTIONS OF ILE 3===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_3405287}}~~	+
-		+
-	~~==About this Structure==~~	+
-	~~[[1l17]] is~~ a ~~1 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org/wiki/Enterobacteria_phage_t4 Enterobacteria phage t4]~~. ~~Full crystallographic information is available from [http:~~/~~/oca.weizmann.ac.il/oca-bin/ocashort?id=1L17 OCA].~~	+

	==See Also==		==See Also==
-	*[[~~Hen Egg-White (HEW)~~ Lysozyme\|~~Hen Egg-White (HEW)~~ Lysozyme]]	+	*[[Lysozyme 3D structures\|Lysozyme 3D structures]]
-		+	== References ==
-	==~~Reference~~==	+	<references/>
-	<~~ref group="xtra">PMID:003405287<~~/~~ref~~><~~ref group="xtra">PMID:012163496</ref><references group="xtra"~~/>	+	__TOC__
		+	</StructureSection>
	[[Category: Enterobacteria phage t4]]		[[Category: Enterobacteria phage t4]]
	[[Category: Lysozyme]]		[[Category: Lysozyme]]

OCA at 13:34, 20 October 2012

OCA — Sat, 20 Oct 2012 13:34:39 GMT

←Older revision		Revision as of 13:34, 20 October 2012
Line 8:		Line 8:

	==About this Structure==		==About this Structure==
-	[[1l17]] is a 1 chain structure ~~of [[Hen Egg-White (HEW) Lysozyme]]~~ with sequence from [http://en.wikipedia.org/wiki/Enterobacteria_phage_t4 Enterobacteria phage t4]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1L17 OCA].	+	[[1l17]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Enterobacteria_phage_t4 Enterobacteria phage t4]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1L17 OCA].

	==See Also==		==See Also==