1l4r - Revision history

OCA at 06:39, 18 August 2021

OCA — Wed, 18 Aug 2021 06:39:35 GMT

←Older revision		Revision as of 06:39, 18 August 2021
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	<StructureSection load='1l4r' size='340' side='right'caption='[[1l4r]]' scene=''>		<StructureSection load='1l4r' size='340' side='right'caption='[[1l4r]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1L4R FirstGlance]. <br>	+	<table><tr><td colspan='2'>For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1L4R FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1l4r FirstGlance], [~~http~~://www.ebi.ac.uk/pdbsum/1l4r PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=1l4r ProSAT]</span></td></tr>	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1l4r FirstGlance], [https://www.ebi.ac.uk/pdbsum/1l4r PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1l4r ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 12:04, 13 November 2019

OCA — Wed, 13 Nov 2019 12:04:57 GMT

←Older revision		Revision as of 12:04, 13 November 2019
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	==MONOMER OF DNA-PACKAGING RNA (PRNA) OF BACTERIOPHAGE PHI29==		==MONOMER OF DNA-PACKAGING RNA (PRNA) OF BACTERIOPHAGE PHI29==
-	<StructureSection load='1l4r' size='340' side='right' caption='[[1l4r]]' scene=''>	+	<StructureSection load='1l4r' size='340' side='right'caption='[[1l4r]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1L4R FirstGlance]. <br>		<table><tr><td colspan='2'>For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1L4R FirstGlance]. <br>
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	</StructureSection>		</StructureSection>
	[[Category: Theoretical Model]]		[[Category: Theoretical Model]]
		+	[[Category: Large Structures]]
	[[Category: Guo, P]]		[[Category: Guo, P]]
	[[Category: Hoeprich, S]]		[[Category: Hoeprich, S]]

OCA at 21:15, 24 January 2018

OCA — Wed, 24 Jan 2018 21:15:04 GMT

←Older revision		Revision as of 21:15, 24 January 2018
Line 5:		Line 5:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1L4R FirstGlance]. <br>		<table><tr><td colspan='2'>For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1L4R FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1l4r FirstGlance], [http://www.ebi.ac.uk/pdbsum/1l4r PDBsum]</span></td></tr>	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1l4r FirstGlance], [http://www.ebi.ac.uk/pdbsum/1l4r PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1l4r ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 09:13, 11 February 2016

OCA — Thu, 11 Feb 2016 09:13:31 GMT

←Older revision		Revision as of 09:13, 11 February 2016
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		+	{{Theoretical_model}}
		+
	==MONOMER OF DNA-PACKAGING RNA (PRNA) OF BACTERIOPHAGE PHI29==		==MONOMER OF DNA-PACKAGING RNA (PRNA) OF BACTERIOPHAGE PHI29==
	<StructureSection load='1l4r' size='340' side='right' caption='[[1l4r]]' scene=''>		<StructureSection load='1l4r' size='340' side='right' caption='[[1l4r]]' scene=''>
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Theoretical Model]]
	[[Category: Guo, P]]		[[Category: Guo, P]]
	[[Category: Hoeprich, S]]		[[Category: Hoeprich, S]]

OCA at 11:37, 10 September 2015

OCA — Thu, 10 Sep 2015 11:37:44 GMT

←Older revision		Revision as of 11:37, 10 September 2015
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	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 1l4r" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>

OCA at 15:22, 5 January 2015

OCA — Mon, 05 Jan 2015 15:22:07 GMT

←Older revision		Revision as of 15:22, 5 January 2015
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1L4R FirstGlance]. <br>		<table><tr><td colspan='2'>For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1L4R FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1l4r FirstGlance], [http://www.ebi.ac.uk/pdbsum/1l4r PDBsum]</span></td></tr>	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1l4r FirstGlance], [http://www.ebi.ac.uk/pdbsum/1l4r PDBsum]</span></td></tr>
-	<table>	+	</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==

OCA at 14:14, 28 September 2014

OCA — Sun, 28 Sep 2014 14:14:38 GMT

←Older revision		Revision as of 14:14, 28 September 2014
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-	~~{{Theoretical_model}}~~	+	==MONOMER OF DNA-PACKAGING RNA (PRNA) OF BACTERIOPHAGE PHI29==
		+	<StructureSection load='1l4r' size='340' side='right' caption='[[1l4r]]' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1L4R FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1l4r FirstGlance], [http://www.ebi.ac.uk/pdbsum/1l4r PDBsum]</span></td></tr>
		+	<table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	A striking common feature in the maturation of all linear double-stranded DNA viruses is that their lengthy genome is translocated with remarkable velocity into the limited space within a preformed protein shell and packaged into near crystalline density. A DNA-translocating motor, powered by ATP hydrolysis, accomplishes this task, which would otherwise be energetically unfavorable. DNA-packaging RNA, pRNA, forms a hexameric complex to serve as a vital component of the DNA translocating motor of bacterial virus Phi29. The sequential action of six pRNA ensures continual function in the DNA translocation process. The Phi29 motor has been assembled with purified components synthesized by chemical or biotechnological approaches and is able to pump the viral DNA into the protein shell in vitro. pRNA dimers are the building blocks of the hexamer. The computer models of the three-dimensional structure of the motor was constructed based on experimental data derived from photoaffinity cross-linking by psoralen, phenphi (cis-Rh(1,10-phenanthroline)(9,10-phenan-threnequinone diimine)Cl(2)(+)), and azidophenacyl; chemical modification and chemical modification interference with dimethyl sulfate, 1-cyclohexyl-3-(2-morpholinoethyl)carbodiimide metho-p-toluene sulfonate, and kethoxal; complementary modification; and nuclease probing by single- and double-stranded specific RNases. The shapes of these computer models are very similar to the published pRNA images of cryo-atomic force microscopy. pRNA hexamer docking with the connector crystal structure reveals a very impressive match with the available biochemical, genetic, and physical data.

-	~~[[Image~~:~~1l4r~~.~~png\|left\|200px]]~~	+	Computer modeling of three-dimensional structure of DNA-packaging RNA (pRNA) monomer, dimer, and hexamer of Phi29 DNA packaging motor.,Hoeprich S, Guo P J Biol Chem. 2002 Jun 7;277(23):20794-803. Epub 2002 Mar 8. PMID:11886855<ref>PMID:11886855</ref>

-	~~{{STRUCTURE_1l4r\| PDB=1l4r \| SCENE= }}~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	==~~=MONOMER OF DNA-PACKAGING RNA (PRNA) OF BACTERIOPHAGE PHI29===~~	+	== References ==
-		+	<references/>
-	~~{{ABSTRACT_PUBMED_11886855}}~~	+	__TOC__
-		+	</StructureSection>
-	~~==Reference~~==	+
-	<~~ref group="xtra">PMID:011886855<~~/~~ref~~><~~references group="xtra"~~/>	+
	[[Category: Guo, P]]		[[Category: Guo, P]]
	[[Category: Hoeprich, S]]		[[Category: Hoeprich, S]]

OCA: Protected "1l4r" [edit=sysop:move=sysop]

OCA — Sun, 21 Oct 2012 08:45:29 GMT

Protected "1l4r" [edit=sysop:move=sysop]

←Older revision

Revision as of 08:45, 21 October 2012

OCA at 08:45, 21 October 2012

OCA — Sun, 21 Oct 2012 08:45:24 GMT

←Older revision		Revision as of 08:45, 21 October 2012
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	{{Theoretical_model}}		{{Theoretical_model}}
-	~~{{Seed}}~~	+
	[[Image:1l4r.png\|left\|200px]]		[[Image:1l4r.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_1l4r", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_1l4r\| PDB=1l4r \| SCENE= }}		{{STRUCTURE_1l4r\| PDB=1l4r \| SCENE= }}

	===MONOMER OF DNA-PACKAGING RNA (PRNA) OF BACTERIOPHAGE PHI29===		===MONOMER OF DNA-PACKAGING RNA (PRNA) OF BACTERIOPHAGE PHI29===

-
-	<!--
-	The line below this paragraph, {{ABSTRACT_PUBMED_11886855}}, adds the Publication Abstract to the page
-	(as it appears on PubMed at http://www.pubmed.gov), where 11886855 is the PubMed ID number.
-	-->
	{{ABSTRACT_PUBMED_11886855}}		{{ABSTRACT_PUBMED_11886855}}
-
-	==About this Structure==
-	Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1L4R OCA].

	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~11886855~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:011886855</ref><references group="xtra"/>
	[[Category: Guo, P]]		[[Category: Guo, P]]
	[[Category: Hoeprich, S]]		[[Category: Hoeprich, S]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Apr 8 06:49:57 2010''

OCA at 03:49, 8 April 2010

OCA — Thu, 08 Apr 2010 03:49:58 GMT

←Older revision		Revision as of 03:49, 8 April 2010
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-	~~'''Theoretical Model'''~~	+	{{Theoretical_model}}
		+	{{Seed}}
		+	[[Image:1l4r.png\|left\|200px]]

-	~~The entry 1L4R is a Theoretical Model titled 'Monomer of DNA~~-~~packaging RNA~~ (~~pRNA~~) ~~of Bacteriophage PHI29'~~.	+	<!--
		+	The line below this paragraph, containing "STRUCTURE_1l4r", creates the "Structure Box" on the page.
		+	You may change the PDB parameter (which sets the PDB file loaded into the applet)
		+	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
		+	or leave the SCENE parameter empty for the default display.
		+	-->
		+	{{STRUCTURE_1l4r\| PDB=1l4r \| SCENE= }}

-	~~[[Category:Theoretical Model]]~~	+	===MONOMER OF DNA-PACKAGING RNA (PRNA) OF BACTERIOPHAGE PHI29===


-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on ~~Wed Jul 30 09:50~~:49 ~~2008~~''	+	<!--
		+	The line below this paragraph, {{ABSTRACT_PUBMED_11886855}}, adds the Publication Abstract to the page
		+	(as it appears on PubMed at http://www.pubmed.gov), where 11886855 is the PubMed ID number.
		+	-->
		+	{{ABSTRACT_PUBMED_11886855}}
		+
		+	==About this Structure==
		+	Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1L4R OCA].
		+
		+	==Reference==
		+	<ref group="xtra">PMID:11886855</ref><references group="xtra"/>
		+	[[Category: Guo, P]]
		+	[[Category: Hoeprich, S]]
		+
		+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Apr 8 06:49:57 2010''