1laj - Revision history

OCA at 09:11, 16 August 2023

OCA — Wed, 16 Aug 2023 09:11:30 GMT

←Older revision		Revision as of 09:11, 16 August 2023
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	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1laj]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Tomato_aspermy_virus Tomato aspermy virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1LAJ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1LAJ FirstGlance]. <br>		<table><tr><td colspan='2'>[[1laj]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Tomato_aspermy_virus Tomato aspermy virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1LAJ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1LAJ FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>~~, ~~<scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 3.4Å</td></tr>
-	<tr id='~~related~~'><td class="sblockLbl"><b>[[~~Related_structure~~\|~~Related~~:]]</b></td><td class="sblockDat"><~~div style~~='~~overflow~~: ~~auto; max-height~~: ~~3em;~~'>~~[[1f15\|1f15]]~~</~~div~~></td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1laj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1laj OCA], [https://pdbe.org/1laj PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1laj RCSB], [https://www.ebi.ac.uk/pdbsum/1laj PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1laj ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1laj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1laj OCA], [https://pdbe.org/1laj PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1laj RCSB], [https://www.ebi.ac.uk/pdbsum/1laj PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1laj ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[https://www.uniprot.org/uniprot/CAPSD_TAV CAPSD_TAV]] Capsid protein. Probably binds RNA and plays a role in packaging (By similarity).	+	[https://www.uniprot.org/uniprot/CAPSD_TAV CAPSD_TAV] Capsid protein. Probably binds RNA and plays a role in packaging (By similarity).
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 38:		Line 38:
	[[Category: Large Structures]]		[[Category: Large Structures]]
	[[Category: Tomato aspermy virus]]		[[Category: Tomato aspermy virus]]
-	[[Category: Canady~~, M A~~]]	+	[[Category: Canady MA]]
-	[[Category: Larson~~, S B~~]]	+	[[Category: Larson SB]]
-	[[Category: Lucas~~, R W~~]]	+	[[Category: Lucas RW]]
-	[[Category: McPherson, A]]	+	[[Category: McPherson A]]
-	~~[[Category: Anti-parallel beta sheet]]~~	+
-	~~[[Category: Disulphide bridge]]~~	+
-	~~[[Category: Icosahedral virus]]~~	+
-	~~[[Category: Jelly roll]]~~	+
-	~~[[Category: Protein-rna complex]]~~	+
-	~~[[Category: T=3 icosahedral virus]]~~	+
-	~~[[Category: Virus-rna complex~~]]	+

OCA at 06:42, 18 August 2021

OCA — Wed, 18 Aug 2021 06:42:02 GMT

←Older revision		Revision as of 06:42, 18 August 2021
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	<StructureSection load='1laj' size='340' side='right'caption='[[1laj]], [[Resolution\|resolution]] 3.40Å' scene=''>		<StructureSection load='1laj' size='340' side='right'caption='[[1laj]], [[Resolution\|resolution]] 3.40Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1laj]] is a 4 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Tomato_aspermy_virus Tomato aspermy virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1LAJ OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1LAJ FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1laj]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Tomato_aspermy_virus Tomato aspermy virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1LAJ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1LAJ FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
-	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1f15\|1f15]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1f15\|1f15]]</div></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1laj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1laj OCA], [~~http~~://pdbe.org/1laj PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=1laj RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/1laj PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=1laj ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1laj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1laj OCA], [https://pdbe.org/1laj PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1laj RCSB], [https://www.ebi.ac.uk/pdbsum/1laj PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1laj ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[~~http~~://www.uniprot.org/uniprot/CAPSD_TAV CAPSD_TAV]] Capsid protein. Probably binds RNA and plays a role in packaging (By similarity).	+	[[https://www.uniprot.org/uniprot/CAPSD_TAV CAPSD_TAV]] Capsid protein. Probably binds RNA and plays a role in packaging (By similarity).
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 31:		Line 31:

	==See Also==		==See Also==
-	*[[Virus coat ~~protein~~\|Virus coat ~~protein~~]]	+	*[[Virus coat proteins 3D structures\|Virus coat proteins 3D structures]]
	== References ==		== References ==
	<references/>		<references/>

OCA at 12:00, 13 November 2019

OCA — Wed, 13 Nov 2019 12:00:46 GMT

←Older revision		Revision as of 12:00, 13 November 2019
Line 1:		Line 1:

	==The Structure of Tomato Aspermy Virus by X-Ray Crystallography==		==The Structure of Tomato Aspermy Virus by X-Ray Crystallography==
-	<StructureSection load='1laj' size='340' side='right' caption='[[1laj]], [[Resolution\|resolution]] 3.40Å' scene=''>	+	<StructureSection load='1laj' size='340' side='right'caption='[[1laj]], [[Resolution\|resolution]] 3.40Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1laj]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Tomato_aspermy_virus Tomato aspermy virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1LAJ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1LAJ FirstGlance]. <br>		<table><tr><td colspan='2'>[[1laj]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Tomato_aspermy_virus Tomato aspermy virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1LAJ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1LAJ FirstGlance]. <br>
Line 29:		Line 29:
	</div>		</div>
	<div class="pdbe-citations 1laj" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 1laj" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[Virus coat protein\|Virus coat protein]]
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
	[[Category: Tomato aspermy virus]]		[[Category: Tomato aspermy virus]]
	[[Category: Canady, M A]]		[[Category: Canady, M A]]

OCA at 21:10, 24 January 2018

OCA — Wed, 24 Jan 2018 21:10:42 GMT

←Older revision		Revision as of 21:10, 24 January 2018
Line 1:		Line 1:
		+
	==The Structure of Tomato Aspermy Virus by X-Ray Crystallography==		==The Structure of Tomato Aspermy Virus by X-Ray Crystallography==
	<StructureSection load='1laj' size='340' side='right' caption='[[1laj]], [[Resolution\|resolution]] 3.40Å' scene=''>		<StructureSection load='1laj' size='340' side='right' caption='[[1laj]], [[Resolution\|resolution]] 3.40Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1laj]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Chrysanthemum_aspermy_virus Chrysanthemum~~ aspermy virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1LAJ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1LAJ FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1laj]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Tomato_aspermy_virus Tomato aspermy virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1LAJ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1LAJ FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1f15\|1f15]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1f15\|1f15]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1laj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1laj OCA], [http://pdbe.org/1laj PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1laj RCSB], [http://www.ebi.ac.uk/pdbsum/1laj PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1laj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1laj OCA], [http://pdbe.org/1laj PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1laj RCSB], [http://www.ebi.ac.uk/pdbsum/1laj PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1laj ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 13:		Line 14:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/la/1laj_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/la/1laj_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
Line 28:		Line 29:
	</div>		</div>
	<div class="pdbe-citations 1laj" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 1laj" style="background-color:#fffaf0;"></div>
-
-	==See Also==
-	*[[Virus coat protein\|Virus coat protein]]
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Chrysanthemum~~ aspermy virus]]	+	[[Category: Tomato aspermy virus]]
	[[Category: Canady, M A]]		[[Category: Canady, M A]]
	[[Category: Larson, S B]]		[[Category: Larson, S B]]

OCA at 16:04, 7 February 2016

OCA — Sun, 07 Feb 2016 16:04:40 GMT

←Older revision		Revision as of 16:04, 7 February 2016
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	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1laj ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 03:03, 10 September 2015

OCA — Thu, 10 Sep 2015 03:03:32 GMT

←Older revision		Revision as of 03:03, 10 September 2015
Line 2:		Line 2:
	<StructureSection load='1laj' size='340' side='right' caption='[[1laj]], [[Resolution\|resolution]] 3.40Å' scene=''>		<StructureSection load='1laj' size='340' side='right' caption='[[1laj]], [[Resolution\|resolution]] 3.40Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1laj]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Tomato_aspermy_virus Tomato~~ aspermy virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1LAJ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1LAJ FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1laj]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Chrysanthemum_aspermy_virus Chrysanthemum aspermy virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1LAJ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1LAJ FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1f15\|1f15]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1f15\|1f15]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1laj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1laj OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1laj RCSB], [http://www.ebi.ac.uk/pdbsum/1laj PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1laj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1laj OCA], [http://pdbe.org/1laj PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1laj RCSB], [http://www.ebi.ac.uk/pdbsum/1laj PDBsum]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[http://www.uniprot.org/uniprot/~~COAT_TAV COAT_TAV~~]] Capsid protein. Probably binds RNA and plays a role in packaging (By similarity).	+	[[http://www.uniprot.org/uniprot/CAPSD_TAV CAPSD_TAV]] Capsid protein. Probably binds RNA and plays a role in packaging (By similarity).
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 27:		Line 27:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 1laj" style="background-color:#fffaf0;"></div>

	==See Also==		==See Also==
Line 34:		Line 35:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Tomato~~ aspermy virus]]	+	[[Category: Chrysanthemum aspermy virus]]
	[[Category: Canady, M A]]		[[Category: Canady, M A]]
	[[Category: Larson, S B]]		[[Category: Larson, S B]]

OCA at 16:30, 24 December 2014

OCA — Wed, 24 Dec 2014 16:30:06 GMT

←Older revision		Revision as of 16:30, 24 December 2014
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1laj]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Tomato_aspermy_virus Tomato aspermy virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1LAJ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1LAJ FirstGlance]. <br>		<table><tr><td colspan='2'>[[1laj]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Tomato_aspermy_virus Tomato aspermy virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1LAJ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1LAJ FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1f15\|1f15]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1f15\|1f15]]</td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1laj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1laj OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1laj RCSB], [http://www.ebi.ac.uk/pdbsum/1laj PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1laj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1laj OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1laj RCSB], [http://www.ebi.ac.uk/pdbsum/1laj PDBsum]</span></td></tr>
-	<table>	+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/COAT_TAV COAT_TAV]] Capsid protein. Probably binds RNA and plays a role in packaging (By similarity).
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 33:		Line 35:
	</StructureSection>		</StructureSection>
	[[Category: Tomato aspermy virus]]		[[Category: Tomato aspermy virus]]
-	[[Category: Canady, M A.]]	+	[[Category: Canady, M A]]
-	[[Category: Larson, S B.]]	+	[[Category: Larson, S B]]
-	[[Category: Lucas, R W.]]	+	[[Category: Lucas, R W]]
-	[[Category: McPherson, A.]]	+	[[Category: McPherson, A]]
	[[Category: Anti-parallel beta sheet]]		[[Category: Anti-parallel beta sheet]]
	[[Category: Disulphide bridge]]		[[Category: Disulphide bridge]]

OCA at 11:28, 3 October 2014

OCA — Fri, 03 Oct 2014 11:28:38 GMT

←Older revision		Revision as of 11:28, 3 October 2014
Line 1:		Line 1:
-	[[~~Image:~~1laj.~~png~~\|~~left~~\|200px]]	+	==The Structure of Tomato Aspermy Virus by X-Ray Crystallography==
		+	<StructureSection load='1laj' size='340' side='right' caption='[[1laj]], [[Resolution\|resolution]] 3.40Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[1laj]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Tomato_aspermy_virus Tomato aspermy virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1LAJ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1LAJ FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene><br>
		+	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1f15\|1f15]]</td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1laj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1laj OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1laj RCSB], [http://www.ebi.ac.uk/pdbsum/1laj PDBsum]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/la/1laj_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	The three-dimensional structure of tomato aspermy virus (TAV) has been solved by X-ray crystallography and refined to an R factor of 0.218 for 3.4-40 A data (effective resolution of 4A). Molecular replacement, using cucumber mosaic virus (Smith et al., 2000), provided phases for the initial maps used for model building. The coat protein of the 280 A diameter virion has the canonical "Swiss roll" beta-barrel topology with a distinctive amino-terminal alpha-helix directed into the interior of the virus where it interacts with encapsidated RNA. The N-terminal helices are joined to the beta-barrels of protein subunits by extended polypeptides of six amino acids, which serve as flexible hinges allowing movement of the helices in response to local RNA distribution. Segments of three nucleotides of partially disordered RNA interact with the capsid, primarily through arginine residues, at interfaces between A and B subunits. Side chains of cys64 and cys106 form the first disulfide observed in a cucumovirus, including a unique cysteine, 106, in a region otherwise conserved. A positive ion, putatively modeled as a Mg(+)ion, lies on the quasi-threefold axis surrounded by three quasi-symmetric glutamate 175 side chains.

-	~~{{STRUCTURE_1laj\| PDB=1laj \| SCENE= }}~~	+	The structure of tomato aspermy virus by X-ray crystallography.,Lucas RW, Larson SB, Canady MA, McPherson A J Struct Biol. 2002 Aug;139(2):90-102. PMID:12406691<ref>PMID:12406691</ref>

-	~~===The Structure~~ of ~~Tomato Aspermy Virus by X-Ray Crystallography===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_12406691}}~~	+
-		+
-	~~==About this Structure==~~	+
-	~~[[1laj]] is a 4 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org/wiki/Tomato_aspermy_virus Tomato aspermy virus]~~. ~~Full crystallographic information is available from [http:~~/~~/oca.weizmann.ac.il/oca-bin/ocashort?id=1LAJ OCA].~~	+

	==See Also==		==See Also==
	*[[Virus coat protein\|Virus coat protein]]		*[[Virus coat protein\|Virus coat protein]]
-		+	== References ==
-	==~~Reference~~==	+	<references/>
-	<~~ref group="xtra">PMID:012406691<~~/~~ref~~><~~references group="xtra"~~/>	+	__TOC__
		+	</StructureSection>
	[[Category: Tomato aspermy virus]]		[[Category: Tomato aspermy virus]]
	[[Category: Canady, M A.]]		[[Category: Canady, M A.]]

OCA: Protected "1laj" [edit=sysop:move=sysop]

OCA — Sat, 20 Oct 2012 07:10:03 GMT

Protected "1laj" [edit=sysop:move=sysop]

←Older revision

Revision as of 07:10, 20 October 2012

OCA at 07:10, 20 October 2012

OCA — Sat, 20 Oct 2012 07:10:00 GMT

←Older revision		Revision as of 07:10, 20 October 2012
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-	{{Seed}}
	[[Image:1laj.png\|left\|200px]]		[[Image:1laj.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_1laj", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_1laj\| PDB=1laj \| SCENE= }}		{{STRUCTURE_1laj\| PDB=1laj \| SCENE= }}

	===The Structure of Tomato Aspermy Virus by X-Ray Crystallography===		===The Structure of Tomato Aspermy Virus by X-Ray Crystallography===

-
-	<!--
-	The line below this paragraph, {{ABSTRACT_PUBMED_12406691}}, adds the Publication Abstract to the page
-	(as it appears on PubMed at http://www.pubmed.gov), where 12406691 is the PubMed ID number.
-	-->
	{{ABSTRACT_PUBMED_12406691}}		{{ABSTRACT_PUBMED_12406691}}

	==About this Structure==		==About this Structure==
-	~~1LAJ~~ is a 4 ~~chains~~ structure ~~of sequences~~ from [http://en.wikipedia.org/wiki/Tomato_aspermy_virus Tomato aspermy virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1LAJ OCA].	+	[[1laj]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Tomato_aspermy_virus Tomato aspermy virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1LAJ OCA].
		+
		+	==See Also==
		+	*[[Virus coat protein\|Virus coat protein]]

	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~12406691~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:012406691</ref><references group="xtra"/>
	[[Category: Tomato aspermy virus]]		[[Category: Tomato aspermy virus]]
	[[Category: Canady, M A.]]		[[Category: Canady, M A.]]
Line 35:		Line 26:
	[[Category: Protein-rna complex]]		[[Category: Protein-rna complex]]
	[[Category: T=3 icosahedral virus]]		[[Category: T=3 icosahedral virus]]
-		+	[[Category: Virus-rna complex]]
-	~~''Page seeded by~~ [~~http~~:~~//oca.weizmann.ac.il/oca OCA~~ ] ~~on Mon Feb 16 14:58:49 2009''~~	+