1n0f - Revision history

OCA at 07:50, 14 February 2024

OCA — Wed, 14 Feb 2024 07:50:47 GMT

←Older revision		Revision as of 07:50, 14 February 2024
Line 3:		Line 3:
	<StructureSection load='1n0f' size='340' side='right'caption='[[1n0f]], [[Resolution\|resolution]] 2.80Å' scene=''>		<StructureSection load='1n0f' size='340' side='right'caption='[[1n0f]], [[Resolution\|resolution]] 2.80Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1n0f]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/~~"filterable_agent_of_primary_atypical_pneumonia"_eaton_et_al._1944 "filterable agent of primary atypical pneumonia" eaton et al. 1944~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1N0F OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1N0F FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1n0f]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/Mycoplasma_pneumoniae Mycoplasma pneumoniae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1N0F OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1N0F FirstGlance]. <br>
-	</td></tr><tr id='~~related~~'><td class="sblockLbl"><b>[[~~Related_structure~~\|~~Related~~:]]</b></td><td class="sblockDat">~~<div style='overflow: auto; max~~-~~height: 3em;'>[[1n0e\|1n0e]]~~, [[~~1n0g~~\|~~1n0g~~]]~~</div>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.8Å</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1n0f FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1n0f OCA], [https://pdbe.org/1n0f PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1n0f RCSB], [https://www.ebi.ac.uk/pdbsum/1n0f PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1n0f ProSAT], [https://www.topsan.org/Proteins/BSGC/1n0f TOPSAN]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1n0f FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1n0f OCA], [https://pdbe.org/1n0f PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1n0f RCSB], [https://www.ebi.ac.uk/pdbsum/1n0f PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1n0f ProSAT], [https://www.topsan.org/Proteins/BSGC/1n0f TOPSAN]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/MRAZ_MYCPN MRAZ_MYCPN]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 17:		Line 19:
	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1n0f ConSurf].		</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1n0f ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
-	<div style="background-color:#fffaf0;">
-	== Publication Abstract from PubMed ==
-	UPF0040 is a family of proteins implicated in a cellular function of bacteria cell division. There is no structure information available on protein of this family. We have determined the crystal structure of a protein from Mycoplasma pneumoniae that belongs to this family using X-ray crystallography. Structural homology search reveals that this protein has a novel fold with no significant similarity to any proteins of known three-dimensional structure. The crystal structures of the protein in three different crystal forms reveal that the protein exists as a ring of octamer. The conserved protein residues, including a highly conserved DXXXR motif, are examined on the basis of crystal structure.
-
-	Crystal structure of a protein associated with cell division from Mycoplasma pneumoniae (GI: 13508053): a novel fold with a conserved sequence motif.,Chen S, Jancrick J, Yokota H, Kim R, Kim SH Proteins. 2004 Jun 1;55(4):785-91. PMID:15146477<ref>PMID:15146477</ref>
-
-	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	</div>
-	<div class="pdbe-citations 1n0f" style="background-color:#fffaf0;"></div>
-	== References ==
-	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Filterable agent of primary atypical pneumonia eaton et al. 1944]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Structural genomic~~]]	+	[[Category: Mycoplasma pneumoniae]]
-	[[Category: Chen, S]]	+	[[Category: Chen S]]
-	[[Category: Jancrick, J]]	+	[[Category: Jancrick J]]
-	[[Category: Kim, R]]	+	[[Category: Kim R]]
-	[[Category: Kim, S H]]	+	[[Category: Kim S-H]]
-	[[Category: Yokota, H]]	+	[[Category: Yokota H]]
-	~~[[Category: Biosynthetic protein]]~~	+
-	~~[[Category: Bsgc structure funded by nih]]~~	+
-	~~[[Category: Cell division]]~~	+
-	~~[[Category: Cell wall biosynthesis protein]]~~	+
-	~~[[Category: PSI, Protein structure initiative~~]]	+

OCA at 06:57, 25 August 2021

OCA — Wed, 25 Aug 2021 06:57:38 GMT

←Older revision		Revision as of 06:57, 25 August 2021
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	<StructureSection load='1n0f' size='340' side='right'caption='[[1n0f]], [[Resolution\|resolution]] 2.80Å' scene=''>		<StructureSection load='1n0f' size='340' side='right'caption='[[1n0f]], [[Resolution\|resolution]] 2.80Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1n0f]] is a 8 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/"filterable_agent_of_primary_atypical_pneumonia"_eaton_et_al._1944 "filterable agent of primary atypical pneumonia" eaton et al. 1944]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1N0F OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1N0F FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1n0f]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/"filterable_agent_of_primary_atypical_pneumonia"_eaton_et_al._1944 "filterable agent of primary atypical pneumonia" eaton et al. 1944]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1N0F OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1N0F FirstGlance]. <br>
-	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1n0e\|1n0e]], [[1n0g\|1n0g]]</td></tr>	+	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1n0e\|1n0e]], [[1n0g\|1n0g]]</div></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1n0f FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1n0f OCA], [~~http~~://pdbe.org/1n0f PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=1n0f RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/1n0f PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=1n0f ProSAT], [~~http~~://www.topsan.org/Proteins/BSGC/1n0f TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1n0f FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1n0f OCA], [https://pdbe.org/1n0f PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1n0f RCSB], [https://www.ebi.ac.uk/pdbsum/1n0f PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1n0f ProSAT], [https://www.topsan.org/Proteins/BSGC/1n0f TOPSAN]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==

OCA at 18:14, 20 November 2019

OCA — Wed, 20 Nov 2019 18:14:53 GMT

←Older revision		Revision as of 18:14, 20 November 2019
Line 1:		Line 1:

	==CRYSTAL STRUCTURE OF A CELL DIVISION AND CELL WALL BIOSYNTHESIS PROTEIN UPF0040 FROM MYCOPLASMA PNEUMONIAE: INDICATION OF A NOVEL FOLD WITH A POSSIBLE NEW CONSERVED SEQUENCE MOTIF==		==CRYSTAL STRUCTURE OF A CELL DIVISION AND CELL WALL BIOSYNTHESIS PROTEIN UPF0040 FROM MYCOPLASMA PNEUMONIAE: INDICATION OF A NOVEL FOLD WITH A POSSIBLE NEW CONSERVED SEQUENCE MOTIF==
-	<StructureSection load='1n0f' size='340' side='right' caption='[[1n0f]], [[Resolution\|resolution]] 2.80Å' scene=''>	+	<StructureSection load='1n0f' size='340' side='right'caption='[[1n0f]], [[Resolution\|resolution]] 2.80Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1n0f]] is a 8 chain structure with sequence from [http://en.wikipedia.org/wiki/"filterable_agent_of_primary_atypical_pneumonia"_eaton_et_al._1944 "filterable agent of primary atypical pneumonia" eaton et al. 1944]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1N0F OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1N0F FirstGlance]. <br>		<table><tr><td colspan='2'>[[1n0f]] is a 8 chain structure with sequence from [http://en.wikipedia.org/wiki/"filterable_agent_of_primary_atypical_pneumonia"_eaton_et_al._1944 "filterable agent of primary atypical pneumonia" eaton et al. 1944]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1N0F OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1N0F FirstGlance]. <br>
Line 31:		Line 31:
	</StructureSection>		</StructureSection>
	[[Category: Filterable agent of primary atypical pneumonia eaton et al. 1944]]		[[Category: Filterable agent of primary atypical pneumonia eaton et al. 1944]]
		+	[[Category: Large Structures]]
	[[Category: Structural genomic]]		[[Category: Structural genomic]]
	[[Category: Chen, S]]		[[Category: Chen, S]]

OCA at 07:43, 31 January 2018

OCA — Wed, 31 Jan 2018 07:43:21 GMT

←Older revision		Revision as of 07:43, 31 January 2018
Line 1:		Line 1:
		+
	==CRYSTAL STRUCTURE OF A CELL DIVISION AND CELL WALL BIOSYNTHESIS PROTEIN UPF0040 FROM MYCOPLASMA PNEUMONIAE: INDICATION OF A NOVEL FOLD WITH A POSSIBLE NEW CONSERVED SEQUENCE MOTIF==		==CRYSTAL STRUCTURE OF A CELL DIVISION AND CELL WALL BIOSYNTHESIS PROTEIN UPF0040 FROM MYCOPLASMA PNEUMONIAE: INDICATION OF A NOVEL FOLD WITH A POSSIBLE NEW CONSERVED SEQUENCE MOTIF==
	<StructureSection load='1n0f' size='340' side='right' caption='[[1n0f]], [[Resolution\|resolution]] 2.80Å' scene=''>		<StructureSection load='1n0f' size='340' side='right' caption='[[1n0f]], [[Resolution\|resolution]] 2.80Å' scene=''>
Line 4:		Line 5:
	<table><tr><td colspan='2'>[[1n0f]] is a 8 chain structure with sequence from [http://en.wikipedia.org/wiki/"filterable_agent_of_primary_atypical_pneumonia"_eaton_et_al._1944 "filterable agent of primary atypical pneumonia" eaton et al. 1944]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1N0F OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1N0F FirstGlance]. <br>		<table><tr><td colspan='2'>[[1n0f]] is a 8 chain structure with sequence from [http://en.wikipedia.org/wiki/"filterable_agent_of_primary_atypical_pneumonia"_eaton_et_al._1944 "filterable agent of primary atypical pneumonia" eaton et al. 1944]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1N0F OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1N0F FirstGlance]. <br>
	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1n0e\|1n0e]], [[1n0g\|1n0g]]</td></tr>		</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1n0e\|1n0e]], [[1n0g\|1n0g]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1n0f FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1n0f OCA], [http://pdbe.org/1n0f PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1n0f RCSB], [http://www.ebi.ac.uk/pdbsum/1n0f PDBsum], [http://www.topsan.org/Proteins/BSGC/1n0f TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1n0f FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1n0f OCA], [http://pdbe.org/1n0f PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1n0f RCSB], [http://www.ebi.ac.uk/pdbsum/1n0f PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1n0f ProSAT], [http://www.topsan.org/Proteins/BSGC/1n0f TOPSAN]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 10:		Line 11:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/n0/1n0f_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/n0/1n0f_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>

OCA at 04:12, 10 February 2016

OCA — Wed, 10 Feb 2016 04:12:57 GMT

←Older revision		Revision as of 04:12, 10 February 2016
Line 14:		Line 14:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1n0f ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 05:16, 11 September 2015

OCA — Fri, 11 Sep 2015 05:16:26 GMT

←Older revision		Revision as of 05:16, 11 September 2015
Line 2:		Line 2:
	<StructureSection load='1n0f' size='340' side='right' caption='[[1n0f]], [[Resolution\|resolution]] 2.80Å' scene=''>		<StructureSection load='1n0f' size='340' side='right' caption='[[1n0f]], [[Resolution\|resolution]] 2.80Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1n0f]] is a 8 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Mycoplasma_pneumoniae Mycoplasma pneumoniae~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1N0F OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1N0F FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1n0f]] is a 8 chain structure with sequence from [http://en.wikipedia.org/wiki/"filterable_agent_of_primary_atypical_pneumonia"_eaton_et_al._1944 "filterable agent of primary atypical pneumonia" eaton et al. 1944]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1N0F OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1N0F FirstGlance]. <br>
	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1n0e\|1n0e]], [[1n0g\|1n0g]]</td></tr>		</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1n0e\|1n0e]], [[1n0g\|1n0g]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1n0f FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1n0f OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1n0f RCSB], [http://www.ebi.ac.uk/pdbsum/1n0f PDBsum], [http://www.topsan.org/Proteins/BSGC/1n0f TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1n0f FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1n0f OCA], [http://pdbe.org/1n0f PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1n0f RCSB], [http://www.ebi.ac.uk/pdbsum/1n0f PDBsum], [http://www.topsan.org/Proteins/BSGC/1n0f TOPSAN]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 24:		Line 24:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 1n0f" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Mycoplasma pneumoniae~~]]	+	[[Category: Filterable agent of primary atypical pneumonia eaton et al. 1944]]
	[[Category: Structural genomic]]		[[Category: Structural genomic]]
	[[Category: Chen, S]]		[[Category: Chen, S]]

OCA at 16:24, 5 January 2015

OCA — Mon, 05 Jan 2015 16:24:39 GMT

←Older revision		Revision as of 16:24, 5 January 2015
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1n0f]] is a 8 chain structure with sequence from [http://en.wikipedia.org/wiki/Mycoplasma_pneumoniae Mycoplasma pneumoniae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1N0F OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1N0F FirstGlance]. <br>		<table><tr><td colspan='2'>[[1n0f]] is a 8 chain structure with sequence from [http://en.wikipedia.org/wiki/Mycoplasma_pneumoniae Mycoplasma pneumoniae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1N0F OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1N0F FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1n0e\|1n0e]], [[1n0g\|1n0g]]</td></tr>	+	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1n0e\|1n0e]], [[1n0g\|1n0g]]</td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1n0f FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1n0f OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1n0f RCSB], [http://www.ebi.ac.uk/pdbsum/1n0f PDBsum], [http://www.topsan.org/Proteins/BSGC/1n0f TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1n0f FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1n0f OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1n0f RCSB], [http://www.ebi.ac.uk/pdbsum/1n0f PDBsum], [http://www.topsan.org/Proteins/BSGC/1n0f TOPSAN]</span></td></tr>
-	<table>	+	</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 29:		Line 29:
	</StructureSection>		</StructureSection>
	[[Category: Mycoplasma pneumoniae]]		[[Category: Mycoplasma pneumoniae]]
-	[[Category: ~~BSGC, Berkeley~~ Structural ~~Genomics Center.~~]]	+	[[Category: Structural genomic]]
-	[[Category: Chen, S.]]	+	[[Category: Chen, S]]
-	[[Category: Jancrick, J.]]	+	[[Category: Jancrick, J]]
-	[[Category: Kim, R.]]	+	[[Category: Kim, R]]
-	[[Category: Kim, S H.]]	+	[[Category: Kim, S H]]
-	[[Category: Yokota, H~~.]]~~	+	[[Category: Yokota, H]]
-	~~[[Category: Berkeley structural genomics center~~]]	+
	[[Category: Biosynthetic protein]]		[[Category: Biosynthetic protein]]
	[[Category: Bsgc structure funded by nih]]		[[Category: Bsgc structure funded by nih]]
	[[Category: Cell division]]		[[Category: Cell division]]
	[[Category: Cell wall biosynthesis protein]]		[[Category: Cell wall biosynthesis protein]]
-	[[Category: Protein structure initiative]]	+	[[Category: PSI, Protein structure initiative]]
-	~~[[Category: Psi]]~~	+
-	~~[[Category: Structural genomic~~]]	+

OCA at 13:38, 28 September 2014

OCA — Sun, 28 Sep 2014 13:38:59 GMT

←Older revision		Revision as of 13:38, 28 September 2014
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-	[[~~Image:~~1n0f.~~png~~\|~~left~~\|200px]]	+	==CRYSTAL STRUCTURE OF A CELL DIVISION AND CELL WALL BIOSYNTHESIS PROTEIN UPF0040 FROM MYCOPLASMA PNEUMONIAE: INDICATION OF A NOVEL FOLD WITH A POSSIBLE NEW CONSERVED SEQUENCE MOTIF==
		+	<StructureSection load='1n0f' size='340' side='right' caption='[[1n0f]], [[Resolution\|resolution]] 2.80Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[1n0f]] is a 8 chain structure with sequence from [http://en.wikipedia.org/wiki/Mycoplasma_pneumoniae Mycoplasma pneumoniae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1N0F OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1N0F FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1n0e\|1n0e]], [[1n0g\|1n0g]]</td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1n0f FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1n0f OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1n0f RCSB], [http://www.ebi.ac.uk/pdbsum/1n0f PDBsum], [http://www.topsan.org/Proteins/BSGC/1n0f TOPSAN]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/n0/1n0f_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	UPF0040 is a family of proteins implicated in a cellular function of bacteria cell division. There is no structure information available on protein of this family. We have determined the crystal structure of a protein from Mycoplasma pneumoniae that belongs to this family using X-ray crystallography. Structural homology search reveals that this protein has a novel fold with no significant similarity to any proteins of known three-dimensional structure. The crystal structures of the protein in three different crystal forms reveal that the protein exists as a ring of octamer. The conserved protein residues, including a highly conserved DXXXR motif, are examined on the basis of crystal structure.

-	~~{{STRUCTURE_1n0f\| PDB=1n0f \| SCENE= }}~~	+	Crystal structure of a protein associated with cell division from Mycoplasma pneumoniae (GI: 13508053): a novel fold with a conserved sequence motif.,Chen S, Jancrick J, Yokota H, Kim R, Kim SH Proteins. 2004 Jun 1;55(4):785-91. PMID:15146477<ref>PMID:15146477</ref>

-	~~===CRYSTAL STRUCTURE OF A CELL DIVISION AND CELL WALL BIOSYNTHESIS PROTEIN UPF0040 FROM MYCOPLASMA PNEUMONIAE: INDICATION OF A NOVEL FOLD WITH A POSSIBLE NEW CONSERVED SEQUENCE MOTIF===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_15146477}}~~	+	== References ==
-		+	<references/>
-	~~==About this Structure==~~	+	__TOC__
-	~~[[1n0f]] is~~ a ~~8 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org/wiki/Mycoplasma_pneumoniae Mycoplasma pneumoniae]~~. ~~Full crystallographic information is available from [http:~~/~~/oca.weizmann.ac.il/oca-bin/ocashort?id=1N0F OCA].~~	+	</StructureSection>
-		+
-	==~~Reference~~==	+
-	<~~ref group="xtra">PMID:015146477<~~/~~ref~~><~~references group="xtra"~~/>	+
	[[Category: Mycoplasma pneumoniae]]		[[Category: Mycoplasma pneumoniae]]
	[[Category: BSGC, Berkeley Structural Genomics Center.]]		[[Category: BSGC, Berkeley Structural Genomics Center.]]

OCA: Protected "1n0f" [edit=sysop:move=sysop]

OCA — Wed, 05 Dec 2012 20:38:19 GMT

Protected "1n0f" [edit=sysop:move=sysop]

←Older revision

Revision as of 20:38, 5 December 2012

OCA at 20:38, 5 December 2012

OCA — Wed, 05 Dec 2012 20:38:17 GMT

←Older revision		Revision as of 20:38, 5 December 2012
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-	{{Seed}}
	[[Image:1n0f.png\|left\|200px]]		[[Image:1n0f.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_1n0f", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_1n0f\| PDB=1n0f \| SCENE= }}		{{STRUCTURE_1n0f\| PDB=1n0f \| SCENE= }}

	===CRYSTAL STRUCTURE OF A CELL DIVISION AND CELL WALL BIOSYNTHESIS PROTEIN UPF0040 FROM MYCOPLASMA PNEUMONIAE: INDICATION OF A NOVEL FOLD WITH A POSSIBLE NEW CONSERVED SEQUENCE MOTIF===		===CRYSTAL STRUCTURE OF A CELL DIVISION AND CELL WALL BIOSYNTHESIS PROTEIN UPF0040 FROM MYCOPLASMA PNEUMONIAE: INDICATION OF A NOVEL FOLD WITH A POSSIBLE NEW CONSERVED SEQUENCE MOTIF===

-
-	<!--
-	The line below this paragraph, {{ABSTRACT_PUBMED_15146477}}, adds the Publication Abstract to the page
-	(as it appears on PubMed at http://www.pubmed.gov), where 15146477 is the PubMed ID number.
-	-->
	{{ABSTRACT_PUBMED_15146477}}		{{ABSTRACT_PUBMED_15146477}}

	==About this Structure==		==About this Structure==
-	~~1N0F~~ is a 8 ~~chains~~ structure ~~of sequences~~ from [http://en.wikipedia.org/wiki/Mycoplasma_pneumoniae Mycoplasma pneumoniae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1N0F OCA].	+	[[1n0f]] is a 8 chain structure with sequence from [http://en.wikipedia.org/wiki/Mycoplasma_pneumoniae Mycoplasma pneumoniae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1N0F OCA].

	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~15146477~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:015146477</ref><references group="xtra"/>
	[[Category: Mycoplasma pneumoniae]]		[[Category: Mycoplasma pneumoniae]]
	[[Category: BSGC, Berkeley Structural Genomics Center.]]		[[Category: BSGC, Berkeley Structural Genomics Center.]]
Line 32:		Line 20:
	[[Category: Yokota, H.]]		[[Category: Yokota, H.]]
	[[Category: Berkeley structural genomics center]]		[[Category: Berkeley structural genomics center]]
		+	[[Category: Biosynthetic protein]]
	[[Category: Bsgc structure funded by nih]]		[[Category: Bsgc structure funded by nih]]
	[[Category: Cell division]]		[[Category: Cell division]]
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	[[Category: Psi]]		[[Category: Psi]]
	[[Category: Structural genomic]]		[[Category: Structural genomic]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 15:20:25 2009''