1n9o - Revision history

OCA at 07:20, 25 October 2023

OCA — Wed, 25 Oct 2023 07:20:05 GMT

←Older revision		Revision as of 07:20, 25 October 2023
Line 3:		Line 3:
	<StructureSection load='1n9o' size='340' side='right'caption='[[1n9o]], [[Resolution\|resolution]] 2.80Å' scene=''>		<StructureSection load='1n9o' size='340' side='right'caption='[[1n9o]], [[Resolution\|resolution]] 2.80Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1n9o]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Chlre Chlre~~]. The March 2015 RCSB PDB [https://pdb.rcsb.org/pdb/static.do?p=education_discussion/molecule_of_the_month/index.html Molecule of the Month] feature on ''Phototropin'' by David Goodsell is [https://dx.doi.org/10.2210/rcsb_pdb/mom_2015_3 10.2210/rcsb_pdb/mom_2015_3]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1N9O OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1N9O FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1n9o]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Chlamydomonas_reinhardtii Chlamydomonas reinhardtii]. The March 2015 RCSB PDB [https://pdb.rcsb.org/pdb/static.do?p=education_discussion/molecule_of_the_month/index.html Molecule of the Month] feature on ''Phototropin'' by David Goodsell is [https://dx.doi.org/10.2210/rcsb_pdb/mom_2015_3 10.2210/rcsb_pdb/mom_2015_3]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1N9O OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1N9O FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=FMN:FLAVIN+MONONUCLEOTIDE'>FMN</scene>~~, ~~<scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.8Å</td></tr>
-	<tr id='~~related~~'><td class="sblockLbl"><b>[[~~Related_structure~~\|~~Related~~:]]</b></td><td class="sblockDat"><~~div style~~='~~overflow~~: ~~auto; max-height: 3em;~~'>~~[[1g28\|1g28]]~~, ~~[[1jnu\|1jnu]], [[1n9l\|1n9l]], [[1n9n\|1n9n]]~~</~~div~~></td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FMN:FLAVIN+MONONUCLEOTIDE'>FMN</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1n9o FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1n9o OCA], [https://pdbe.org/1n9o PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1n9o RCSB], [https://www.ebi.ac.uk/pdbsum/1n9o PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1n9o ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1n9o FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1n9o OCA], [https://pdbe.org/1n9o PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1n9o RCSB], [https://www.ebi.ac.uk/pdbsum/1n9o PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1n9o ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/PHOT_CHLRE PHOT_CHLRE] Protein kinase that acts as a blue light photoreceptor (PubMed:15695460, PubMed:24285544). Required for non-photochemical quenching (NPQ), a mechanism that converts and dissipates the harmful excess absorbed light energy into heat and protect the photosynthetic apparatus from photo-oxidative damage (PubMed:27626383). Controls the energy-dependent chlorophyll fluorescence quenching (qE) activity of chlorophyll excited states by inducing the expression of the qE effector protein LHCSR3 in high light intensities (PubMed:27626383).<ref>PMID:15695460</ref> <ref>PMID:24285544</ref> <ref>PMID:27626383</ref>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Chlre~~]]	+	[[Category: Chlamydomonas reinhardtii]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
	[[Category: Phototropin]]		[[Category: Phototropin]]
	[[Category: RCSB PDB Molecule of the Month]]		[[Category: RCSB PDB Molecule of the Month]]
-	[[Category: Domratcheva, T]]	+	[[Category: Domratcheva T]]
-	[[Category: Fedorov, R]]	+	[[Category: Fedorov R]]
-	[[Category: Fuhrmann, M]]	+	[[Category: Fuhrmann M]]
-	[[Category: Hartmann, E]]	+	[[Category: Hartmann E]]
-	[[Category: Hegemann, P]]	+	[[Category: Hegemann P]]
-	[[Category: Schlichting, I]]	+	[[Category: Schlichting I]]
-	~~[[Category: Electron transport]]~~	+
-	~~[[Category: Flavin~~]]	+

OCA at 06:59, 25 August 2021

OCA — Wed, 25 Aug 2021 06:59:56 GMT

←Older revision		Revision as of 06:59, 25 August 2021
Line 3:		Line 3:
	<StructureSection load='1n9o' size='340' side='right'caption='[[1n9o]], [[Resolution\|resolution]] 2.80Å' scene=''>		<StructureSection load='1n9o' size='340' side='right'caption='[[1n9o]], [[Resolution\|resolution]] 2.80Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1n9o]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Chlre Chlre]. The March 2015 RCSB PDB [~~http~~://pdb.rcsb.org/pdb/static.do?p=education_discussion/molecule_of_the_month/index.html Molecule of the Month] feature on ''Phototropin'' by David Goodsell is [~~http~~://dx.doi.org/10.2210/rcsb_pdb/mom_2015_3 10.2210/rcsb_pdb/mom_2015_3]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1N9O OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1N9O FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1n9o]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Chlre Chlre]. The March 2015 RCSB PDB [https://pdb.rcsb.org/pdb/static.do?p=education_discussion/molecule_of_the_month/index.html Molecule of the Month] feature on ''Phototropin'' by David Goodsell is [https://dx.doi.org/10.2210/rcsb_pdb/mom_2015_3 10.2210/rcsb_pdb/mom_2015_3]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1N9O OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1N9O FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FMN:FLAVIN+MONONUCLEOTIDE'>FMN</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FMN:FLAVIN+MONONUCLEOTIDE'>FMN</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1g28\|1g28]], [[1jnu\|1jnu]], [[1n9l\|1n9l]], [[1n9n\|1n9n]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1g28\|1g28]], [[1jnu\|1jnu]], [[1n9l\|1n9l]], [[1n9n\|1n9n]]</div></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1n9o FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1n9o OCA], [~~http~~://pdbe.org/1n9o PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=1n9o RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/1n9o PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=1n9o ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1n9o FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1n9o OCA], [https://pdbe.org/1n9o PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1n9o RCSB], [https://www.ebi.ac.uk/pdbsum/1n9o PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1n9o ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==

OCA at 13:14, 17 July 2019

OCA — Wed, 17 Jul 2019 13:14:04 GMT

←Older revision		Revision as of 13:14, 17 July 2019
Line 1:		Line 1:

	==Crystal structure of the Phot-LOV1 domain from Chlamydomonas reinhardtii in illuminated state. Composite data set.==		==Crystal structure of the Phot-LOV1 domain from Chlamydomonas reinhardtii in illuminated state. Composite data set.==
-	<StructureSection load='1n9o' size='340' side='right' caption='[[1n9o]], [[Resolution\|resolution]] 2.80Å' scene=''>	+	<StructureSection load='1n9o' size='340' side='right'caption='[[1n9o]], [[Resolution\|resolution]] 2.80Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1n9o]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Chlre Chlre]. The March 2015 RCSB PDB [http://pdb.rcsb.org/pdb/static.do?p=education_discussion/molecule_of_the_month/index.html Molecule of the Month] feature on ''Phototropin'' by David Goodsell is [http://dx.doi.org/10.2210/rcsb_pdb/mom_2015_3 10.2210/rcsb_pdb/mom_2015_3]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1N9O OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1N9O FirstGlance]. <br>		<table><tr><td colspan='2'>[[1n9o]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Chlre Chlre]. The March 2015 RCSB PDB [http://pdb.rcsb.org/pdb/static.do?p=education_discussion/molecule_of_the_month/index.html Molecule of the Month] feature on ''Phototropin'' by David Goodsell is [http://dx.doi.org/10.2210/rcsb_pdb/mom_2015_3 10.2210/rcsb_pdb/mom_2015_3]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1N9O OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1N9O FirstGlance]. <br>
Line 12:		Line 12:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/n9/1n9o_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/n9/1n9o_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
Line 32:		Line 32:
	</StructureSection>		</StructureSection>
	[[Category: Chlre]]		[[Category: Chlre]]
		+	[[Category: Large Structures]]
	[[Category: Phototropin]]		[[Category: Phototropin]]
	[[Category: RCSB PDB Molecule of the Month]]		[[Category: RCSB PDB Molecule of the Month]]

OCA at 15:32, 12 October 2017

OCA — Thu, 12 Oct 2017 15:32:57 GMT

←Older revision		Revision as of 15:32, 12 October 2017
Line 1:		Line 1:
		+
	==Crystal structure of the Phot-LOV1 domain from Chlamydomonas reinhardtii in illuminated state. Composite data set.==		==Crystal structure of the Phot-LOV1 domain from Chlamydomonas reinhardtii in illuminated state. Composite data set.==
	<StructureSection load='1n9o' size='340' side='right' caption='[[1n9o]], [[Resolution\|resolution]] 2.80Å' scene=''>		<StructureSection load='1n9o' size='340' side='right' caption='[[1n9o]], [[Resolution\|resolution]] 2.80Å' scene=''>
Line 5:		Line 6:
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FMN:FLAVIN+MONONUCLEOTIDE'>FMN</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FMN:FLAVIN+MONONUCLEOTIDE'>FMN</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1g28\|1g28]], [[1jnu\|1jnu]], [[1n9l\|1n9l]], [[1n9n\|1n9n]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1g28\|1g28]], [[1jnu\|1jnu]], [[1n9l\|1n9l]], [[1n9n\|1n9n]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1n9o FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1n9o OCA], [http://pdbe.org/1n9o PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1n9o RCSB], [http://www.ebi.ac.uk/pdbsum/1n9o PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1n9o FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1n9o OCA], [http://pdbe.org/1n9o PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1n9o RCSB], [http://www.ebi.ac.uk/pdbsum/1n9o PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1n9o ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 15:		Line 16:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1n9o ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 09:55, 11 September 2015

OCA — Fri, 11 Sep 2015 09:55:19 GMT

←Older revision		Revision as of 09:55, 11 September 2015
Line 2:		Line 2:
	<StructureSection load='1n9o' size='340' side='right' caption='[[1n9o]], [[Resolution\|resolution]] 2.80Å' scene=''>		<StructureSection load='1n9o' size='340' side='right' caption='[[1n9o]], [[Resolution\|resolution]] 2.80Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1n9o]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Chlamydomonas_reinhardtii Chlamydomonas reinhardtii~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1N9O OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1N9O FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1n9o]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Chlre Chlre]. The March 2015 RCSB PDB [http://pdb.rcsb.org/pdb/static.do?p=education_discussion/molecule_of_the_month/index.html Molecule of the Month] feature on ''Phototropin'' by David Goodsell is [http://dx.doi.org/10.2210/rcsb_pdb/mom_2015_3 10.2210/rcsb_pdb/mom_2015_3]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1N9O OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1N9O FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FMN:FLAVIN+MONONUCLEOTIDE'>FMN</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FMN:FLAVIN+MONONUCLEOTIDE'>FMN</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1g28\|1g28]], [[1jnu\|1jnu]], [[1n9l\|1n9l]], [[1n9n\|1n9n]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1g28\|1g28]], [[1jnu\|1jnu]], [[1n9l\|1n9l]], [[1n9n\|1n9n]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1n9o FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1n9o OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1n9o RCSB], [http://www.ebi.ac.uk/pdbsum/1n9o PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1n9o FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1n9o OCA], [http://pdbe.org/1n9o PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1n9o RCSB], [http://www.ebi.ac.uk/pdbsum/1n9o PDBsum]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 25:		Line 25:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 1n9o" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Chlamydomonas reinhardtii~~]]	+	[[Category: Chlre]]
		+	[[Category: Phototropin]]
		+	[[Category: RCSB PDB Molecule of the Month]]
	[[Category: Domratcheva, T]]		[[Category: Domratcheva, T]]
	[[Category: Fedorov, R]]		[[Category: Fedorov, R]]
Line 38:		Line 41:
	[[Category: Electron transport]]		[[Category: Electron transport]]
	[[Category: Flavin]]		[[Category: Flavin]]
-	[[Category: Phototropin]]

OCA at 16:37, 5 January 2015

OCA — Mon, 05 Jan 2015 16:37:57 GMT

←Older revision		Revision as of 16:37, 5 January 2015
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1n9o]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Chlamydomonas_reinhardtii Chlamydomonas reinhardtii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1N9O OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1N9O FirstGlance]. <br>		<table><tr><td colspan='2'>[[1n9o]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Chlamydomonas_reinhardtii Chlamydomonas reinhardtii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1N9O OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1N9O FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FMN:FLAVIN+MONONUCLEOTIDE'>FMN</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FMN:FLAVIN+MONONUCLEOTIDE'>FMN</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1g28\|1g28]], [[1jnu\|1jnu]], [[1n9l\|1n9l]], [[1n9n\|1n9n]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1g28\|1g28]], [[1jnu\|1jnu]], [[1n9l\|1n9l]], [[1n9n\|1n9n]]</td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1n9o FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1n9o OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1n9o RCSB], [http://www.ebi.ac.uk/pdbsum/1n9o PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1n9o FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1n9o OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1n9o RCSB], [http://www.ebi.ac.uk/pdbsum/1n9o PDBsum]</span></td></tr>
-	<table>	+	</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 30:		Line 30:
	</StructureSection>		</StructureSection>
	[[Category: Chlamydomonas reinhardtii]]		[[Category: Chlamydomonas reinhardtii]]
-	[[Category: Domratcheva, T.]]	+	[[Category: Domratcheva, T]]
-	[[Category: Fedorov, R.]]	+	[[Category: Fedorov, R]]
-	[[Category: Fuhrmann, M.]]	+	[[Category: Fuhrmann, M]]
-	[[Category: Hartmann, E.]]	+	[[Category: Hartmann, E]]
-	[[Category: Hegemann, P.]]	+	[[Category: Hegemann, P]]
-	[[Category: Schlichting, I.]]	+	[[Category: Schlichting, I]]
	[[Category: Electron transport]]		[[Category: Electron transport]]
	[[Category: Flavin]]		[[Category: Flavin]]
	[[Category: Phototropin]]		[[Category: Phototropin]]

OCA at 18:00, 28 September 2014

OCA — Sun, 28 Sep 2014 18:00:01 GMT

←Older revision		Revision as of 18:00, 28 September 2014
Line 1:		Line 1:
-	[[~~Image:~~1n9o.~~png~~\|~~left~~\|200px]]	+	==Crystal structure of the Phot-LOV1 domain from Chlamydomonas reinhardtii in illuminated state. Composite data set.==
		+	<StructureSection load='1n9o' size='340' side='right' caption='[[1n9o]], [[Resolution\|resolution]] 2.80Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[1n9o]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Chlamydomonas_reinhardtii Chlamydomonas reinhardtii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1N9O OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1N9O FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FMN:FLAVIN+MONONUCLEOTIDE'>FMN</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene><br>
		+	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1g28\|1g28]], [[1jnu\|1jnu]], [[1n9l\|1n9l]], [[1n9n\|1n9n]]</td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1n9o FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1n9o OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1n9o RCSB], [http://www.ebi.ac.uk/pdbsum/1n9o PDBsum]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/n9/1n9o_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Phot proteins (phototropins and homologs) are blue-light photoreceptors that control mechanical processes like phototropism, chloroplast relocation, or guard-cell opening in plants. Phot receptors consist of two flavin mononucleotide (FMN)-binding light, oxygen, or voltage (LOV) domains and a C-terminal serine/threonine kinase domain. We determined crystal structures of the LOV1 domain of Phot1 from the green alga Chlamydomonas reinhardtii in the dark and illuminated state to 1.9 A and 2.8 A resolution, respectively. The structure resembles that of LOV2 from Adiantum (Crosson, S. and K. Moffat. 2001. PROC: Natl. Acad. Sci. USA. 98:2995-3000). In the resting dark state of LOV1, the reactive Cys-57 is present in two conformations. Blue-light absorption causes formation of a proposed active signaling state that is characterized by a covalent bond between the flavin C4a and the thiol of Cys-57. There are differences around the FMN chromophore but no large overall conformational changes. Quantum chemical calculations based on the crystal structures revealed the electronic distribution in the active site during the photocycle. The results suggest trajectories for electrons, protons, and the active site cysteine and offer an interpretation of the reaction mechanism.

-	~~{{STRUCTURE_1n9o\| PDB=1n9o \| SCENE= }}~~	+	Crystal structures and molecular mechanism of a light-induced signaling switch: The Phot-LOV1 domain from Chlamydomonas reinhardtii.,Fedorov R, Schlichting I, Hartmann E, Domratcheva T, Fuhrmann M, Hegemann P Biophys J. 2003 Apr;84(4):2474-82. PMID:12668455<ref>PMID:12668455</ref>

-	~~===Crystal structure~~ of the ~~Phot-LOV1 domain from Chlamydomonas reinhardtii in illuminated state~~. ~~Composite data set~~.~~===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_12668455}}~~	+	== References ==
-		+	<references/>
-	~~==About this Structure==~~	+	__TOC__
-	~~[[1n9o]] is a 1 chain structure with sequence from [http:~~/~~/en.wikipedia.org/wiki/Chlamydomonas_reinhardtii Chlamydomonas reinhardtii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1N9O OCA].~~	+	</StructureSection>
-		+
-	==~~Reference~~==	+
-	<~~ref group="xtra">PMID:012668455<~~/~~ref~~><~~references group="xtra"~~/>	+
	[[Category: Chlamydomonas reinhardtii]]		[[Category: Chlamydomonas reinhardtii]]
	[[Category: Domratcheva, T.]]		[[Category: Domratcheva, T.]]

OCA: Protected "1n9o" [edit=sysop:move=sysop]

OCA — Wed, 05 Dec 2012 20:54:07 GMT

Protected "1n9o" [edit=sysop:move=sysop]

←Older revision

Revision as of 20:54, 5 December 2012

OCA at 20:54, 5 December 2012

OCA — Wed, 05 Dec 2012 20:54:05 GMT

←Older revision		Revision as of 20:54, 5 December 2012
Line 1:		Line 1:
-	{{Seed}}
	[[Image:1n9o.png\|left\|200px]]		[[Image:1n9o.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_1n9o", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_1n9o\| PDB=1n9o \| SCENE= }}		{{STRUCTURE_1n9o\| PDB=1n9o \| SCENE= }}

	===Crystal structure of the Phot-LOV1 domain from Chlamydomonas reinhardtii in illuminated state. Composite data set.===		===Crystal structure of the Phot-LOV1 domain from Chlamydomonas reinhardtii in illuminated state. Composite data set.===

-
-	<!--
-	The line below this paragraph, {{ABSTRACT_PUBMED_12668455}}, adds the Publication Abstract to the page
-	(as it appears on PubMed at http://www.pubmed.gov), where 12668455 is the PubMed ID number.
-	-->
	{{ABSTRACT_PUBMED_12668455}}		{{ABSTRACT_PUBMED_12668455}}

	==About this Structure==		==About this Structure==
-	~~1N9O~~ is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Chlamydomonas_reinhardtii Chlamydomonas reinhardtii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1N9O OCA].	+	[[1n9o]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Chlamydomonas_reinhardtii Chlamydomonas reinhardtii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1N9O OCA].

	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~12668455~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:012668455</ref><references group="xtra"/>
	[[Category: Chlamydomonas reinhardtii]]		[[Category: Chlamydomonas reinhardtii]]
	[[Category: Domratcheva, T.]]		[[Category: Domratcheva, T.]]
Line 31:		Line 19:
	[[Category: Hegemann, P.]]		[[Category: Hegemann, P.]]
	[[Category: Schlichting, I.]]		[[Category: Schlichting, I.]]
		+	[[Category: Electron transport]]
	[[Category: Flavin]]		[[Category: Flavin]]
	[[Category: Phototropin]]		[[Category: Phototropin]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 19:06:23 2009''

OCA at 17:06, 17 February 2009

OCA — Tue, 17 Feb 2009 17:06:24 GMT

←Older revision		Revision as of 17:06, 17 February 2009
Line 20:		Line 20:

	==About this Structure==		==About this Structure==
-	1N9O is a ~~[[Single protein]]~~ structure of sequence from [http://en.wikipedia.org/wiki/Chlamydomonas_reinhardtii Chlamydomonas reinhardtii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1N9O OCA].	+	1N9O is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Chlamydomonas_reinhardtii Chlamydomonas reinhardtii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1N9O OCA].

	==Reference==		==Reference==
-	Crystal structures and molecular mechanism of a light-induced signaling switch: The Phot-LOV1 domain from Chlamydomonas reinhardtii., Fedorov R, Schlichting I, Hartmann E, Domratcheva T, Fuhrmann M, Hegemann P, Biophys J. 2003 Apr;84(4):2474-82. PMID:~~[http:~~//~~www.ncbi.nlm.nih.gov/pubmed/12668455 12668455]~~	+	<ref group="xtra">PMID:12668455</ref><references group="xtra"/>
	[[Category: Chlamydomonas reinhardtii]]		[[Category: Chlamydomonas reinhardtii]]
-	[[Category: Single protein]]
	[[Category: Domratcheva, T.]]		[[Category: Domratcheva, T.]]
	[[Category: Fedorov, R.]]		[[Category: Fedorov, R.]]
Line 35:		Line 34:
	[[Category: Phototropin]]		[[Category: Phototropin]]

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue ~~Jul 29 03~~:13:~~20 2008~~''	+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 19:06:23 2009''