1nkq - Revision history

OCA at 08:50, 10 April 2024

OCA — Wed, 10 Apr 2024 08:50:51 GMT

←Older revision		Revision as of 08:50, 10 April 2024
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	<StructureSection load='1nkq' size='340' side='right'caption='[[1nkq]], [[Resolution\|resolution]] 2.20Å' scene=''>		<StructureSection load='1nkq' size='340' side='right'caption='[[1nkq]], [[Resolution\|resolution]] 2.20Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1nkq]] is a 6 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Atcc_18824 Atcc 18824~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1NKQ OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=1NKQ FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1nkq]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Saccharomyces_cerevisiae Saccharomyces cerevisiae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1NKQ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1NKQ FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=ACY:ACETIC+ACID'>ACY</scene>~~, ~~<scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.2Å</td></tr>
-	<tr id='~~NonStdRes~~'><td class="sblockLbl"><b>[[~~Non-Standard_Residue~~\|~~NonStd Res~~:]]</b></td><td class="sblockDat"><scene name='pdbligand=~~MSE~~:~~SELENOMETHIONINE~~'>~~MSE~~</scene><~~/td~~></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACY:ACETIC+ACID'>ACY</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-	<~~tr id~~='~~gene~~'><~~td class="sblockLbl"~~><~~b>[[Gene\|Gene~~:~~]]</b~~></td>~~<td class="sblockDat">YNL168C or N1696 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=4932 ATCC 18824])~~</td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1nkq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1nkq OCA], [https://pdbe.org/1nkq PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1nkq RCSB], [https://www.ebi.ac.uk/pdbsum/1nkq PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1nkq ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/1nkq TOPSAN]</span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=1nkq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1nkq OCA], [~~http~~://pdbe.org/1nkq PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=1nkq RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/1nkq PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=1nkq ProSAT], [~~http~~://www.topsan.org/Proteins/NYSGXRC/1nkq TOPSAN]</span></td></tr>	+
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/FMP41_YEAST FMP41_YEAST]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 21:		Line 22:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Atcc 18824]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Burley~~, S K~~]]	+	[[Category: Saccharomyces cerevisiae]]
-	[[Category: Daniels, B]]	+	[[Category: Burley SK]]
-	[[Category: Eswaramoorthy, S]]	+	[[Category: Daniels B]]
-	[[Category: Kumaran, D]]	+	[[Category: Eswaramoorthy S]]
-	~~[[Category: Structural genomic~~]]	+	[[Category: Kumaran D]]
-	[[Category: Studier~~, F W~~]]	+	[[Category: Studier FW]]
-	[[Category: Swaminathan, S]]	+	[[Category: Swaminathan S]]
-	~~[[Category: Dimer]]~~	+
-	~~[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics]]~~	+
-	~~[[Category: PSI, Protein structure initiative]]~~	+
-	~~[[Category: Unknown function~~]]	+

OCA at 08:52, 2 December 2020

OCA — Wed, 02 Dec 2020 08:52:19 GMT

←Older revision		Revision as of 08:52, 2 December 2020
Line 1:		Line 1:

	==Crystal structure of yeast ynq8, a fumarylacetoacetate hydrolase family protein==		==Crystal structure of yeast ynq8, a fumarylacetoacetate hydrolase family protein==
-	<StructureSection load='1nkq' size='340' side='right' caption='[[1nkq]], [[Resolution\|resolution]] 2.20Å' scene=''>	+	<StructureSection load='1nkq' size='340' side='right'caption='[[1nkq]], [[Resolution\|resolution]] 2.20Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1nkq]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_18824 Atcc 18824]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1NKQ OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1NKQ FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1nkq]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_18824 Atcc 18824]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1NKQ OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=1NKQ FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACY:ACETIC+ACID'>ACY</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACY:ACETIC+ACID'>ACY</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">YNL168C or N1696 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=4932 ATCC 18824])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">YNL168C or N1696 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=4932 ATCC 18824])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1nkq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1nkq OCA], [http://pdbe.org/1nkq PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1nkq RCSB], [http://www.ebi.ac.uk/pdbsum/1nkq PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1nkq ProSAT], [http://www.topsan.org/Proteins/NYSGXRC/1nkq TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=1nkq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1nkq OCA], [http://pdbe.org/1nkq PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1nkq RCSB], [http://www.ebi.ac.uk/pdbsum/1nkq PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1nkq ProSAT], [http://www.topsan.org/Proteins/NYSGXRC/1nkq TOPSAN]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
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	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/nk/1nkq_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/nk/1nkq_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
Line 22:		Line 22:
	</StructureSection>		</StructureSection>
	[[Category: Atcc 18824]]		[[Category: Atcc 18824]]
		+	[[Category: Large Structures]]
	[[Category: Burley, S K]]		[[Category: Burley, S K]]
	[[Category: Daniels, B]]		[[Category: Daniels, B]]

OCA at 11:20, 12 October 2017

OCA — Thu, 12 Oct 2017 11:20:18 GMT

←Older revision		Revision as of 11:20, 12 October 2017
Line 1:		Line 1:
		+
	==Crystal structure of yeast ynq8, a fumarylacetoacetate hydrolase family protein==		==Crystal structure of yeast ynq8, a fumarylacetoacetate hydrolase family protein==
	<StructureSection load='1nkq' size='340' side='right' caption='[[1nkq]], [[Resolution\|resolution]] 2.20Å' scene=''>		<StructureSection load='1nkq' size='340' side='right' caption='[[1nkq]], [[Resolution\|resolution]] 2.20Å' scene=''>
Line 6:		Line 7:
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">YNL168C or N1696 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=4932 ATCC 18824])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">YNL168C or N1696 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=4932 ATCC 18824])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1nkq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1nkq OCA], [http://pdbe.org/1nkq PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1nkq RCSB], [http://www.ebi.ac.uk/pdbsum/1nkq PDBsum], [http://www.topsan.org/Proteins/NYSGXRC/1nkq TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1nkq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1nkq OCA], [http://pdbe.org/1nkq PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1nkq RCSB], [http://www.ebi.ac.uk/pdbsum/1nkq PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1nkq ProSAT], [http://www.topsan.org/Proteins/NYSGXRC/1nkq TOPSAN]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==

OCA at 05:01, 7 February 2016

OCA — Sun, 07 Feb 2016 05:01:20 GMT

←Older revision		Revision as of 05:01, 7 February 2016
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	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1nkq ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	__TOC__		__TOC__

OCA at 22:05, 9 September 2015

OCA — Wed, 09 Sep 2015 22:05:51 GMT

←Older revision		Revision as of 22:05, 9 September 2015
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	<StructureSection load='1nkq' size='340' side='right' caption='[[1nkq]], [[Resolution\|resolution]] 2.20Å' scene=''>		<StructureSection load='1nkq' size='340' side='right' caption='[[1nkq]], [[Resolution\|resolution]] 2.20Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1nkq]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Saccharomyces_cerevisiae Saccharomyces cerevisiae~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1NKQ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1NKQ FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1nkq]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_18824 Atcc 18824]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1NKQ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1NKQ FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACY:ACETIC+ACID'>ACY</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACY:ACETIC+ACID'>ACY</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">YNL168C or N1696 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=4932 ~~Saccharomyces cerevisiae~~])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">YNL168C or N1696 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=4932 ATCC 18824])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1nkq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1nkq OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1nkq RCSB], [http://www.ebi.ac.uk/pdbsum/1nkq PDBsum], [http://www.topsan.org/Proteins/NYSGXRC/1nkq TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1nkq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1nkq OCA], [http://pdbe.org/1nkq PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1nkq RCSB], [http://www.ebi.ac.uk/pdbsum/1nkq PDBsum], [http://www.topsan.org/Proteins/NYSGXRC/1nkq TOPSAN]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 20:		Line 20:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Saccharomyces cerevisiae~~]]	+	[[Category: Atcc 18824]]
	[[Category: Burley, S K]]		[[Category: Burley, S K]]
	[[Category: Daniels, B]]		[[Category: Daniels, B]]

OCA at 13:37, 6 November 2014

OCA — Thu, 06 Nov 2014 13:37:07 GMT

←Older revision		Revision as of 13:37, 6 November 2014
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1nkq]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Saccharomyces_cerevisiae Saccharomyces cerevisiae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1NKQ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1NKQ FirstGlance]. <br>		<table><tr><td colspan='2'>[[1nkq]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Saccharomyces_cerevisiae Saccharomyces cerevisiae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1NKQ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1NKQ FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACY:ACETIC+ACID'>ACY</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACY:ACETIC+ACID'>ACY</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>	+	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">YNL168C or N1696 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=4932 Saccharomyces cerevisiae])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">YNL168C or N1696 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=4932 Saccharomyces cerevisiae])</td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1nkq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1nkq OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1nkq RCSB], [http://www.ebi.ac.uk/pdbsum/1nkq PDBsum], [http://www.topsan.org/Proteins/NYSGXRC/1nkq TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1nkq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1nkq OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1nkq RCSB], [http://www.ebi.ac.uk/pdbsum/1nkq PDBsum], [http://www.topsan.org/Proteins/NYSGXRC/1nkq TOPSAN]</span></td></tr>
-	<table>	+	</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 21:		Line 21:
	</StructureSection>		</StructureSection>
	[[Category: Saccharomyces cerevisiae]]		[[Category: Saccharomyces cerevisiae]]
-	[[Category: Burley, S K.]]	+	[[Category: Burley, S K]]
-	[[Category: Daniels, B.]]	+	[[Category: Daniels, B]]
-	[[Category: Eswaramoorthy, S.]]	+	[[Category: Eswaramoorthy, S]]
-	[[Category: Kumaran, D~~.]]~~	+	[[Category: Kumaran, D]]
-	~~[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics.]]~~	+
-	~~[[Category: Studier, F W.]]~~	+
-	~~[[Category: Swaminathan, S.]]~~	+
-	~~[[Category: Dimer]]~~	+
-	~~[[Category: New york sgx research center for structural genomic]]~~	+
-	~~[[Category: Nysgxrc]]~~	+
-	~~[[Category: Protein structure initiative]]~~	+
-	~~[[Category: Psi~~]]	+
	[[Category: Structural genomic]]		[[Category: Structural genomic]]
		+	[[Category: Studier, F W]]
		+	[[Category: Swaminathan, S]]
		+	[[Category: Dimer]]
		+	[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics]]
		+	[[Category: PSI, Protein structure initiative]]
	[[Category: Unknown function]]		[[Category: Unknown function]]

OCA at 13:55, 28 September 2014

OCA — Sun, 28 Sep 2014 13:55:59 GMT

←Older revision		Revision as of 13:55, 28 September 2014
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-	~~[[Image:1nkq.png\|left\|200px]]~~	+	==Crystal structure of yeast ynq8, a fumarylacetoacetate hydrolase family protein==
-		+	<StructureSection load='1nkq' size='340' side='right' caption='[[1nkq]], [[Resolution\|resolution]] 2.20Å' scene=''>
-	~~{{STRUCTURE_1nkq\| PDB=1nkq \| SCENE= }}~~	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[1nkq]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Saccharomyces_cerevisiae Saccharomyces cerevisiae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1NKQ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1NKQ FirstGlance]. <br>
-	===Crystal structure of yeast ynq8, a fumarylacetoacetate hydrolase family protein===	+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACY:ACETIC+ACID'>ACY</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene><br>
-		+	<tr><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-		+	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">YNL168C or N1696 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=4932 Saccharomyces cerevisiae])</td></tr>
-	==~~About this Structure~~==	+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1nkq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1nkq OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1nkq RCSB], [http://www.ebi.ac.uk/pdbsum/1nkq PDBsum], [http://www.topsan.org/Proteins/NYSGXRC/1nkq TOPSAN]</span></td></tr>
-	[[1nkq]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Saccharomyces_cerevisiae Saccharomyces cerevisiae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1NKQ OCA].	+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/nk/1nkq_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	__TOC__
		+	</StructureSection>
	[[Category: Saccharomyces cerevisiae]]		[[Category: Saccharomyces cerevisiae]]
	[[Category: Burley, S K.]]		[[Category: Burley, S K.]]

OCA: Protected "1nkq" [edit=sysop:move=sysop]

OCA — Wed, 05 Dec 2012 21:06:10 GMT

Protected "1nkq" [edit=sysop:move=sysop]

←Older revision

Revision as of 21:06, 5 December 2012

OCA at 21:06, 5 December 2012

OCA — Wed, 05 Dec 2012 21:06:08 GMT

←Older revision		Revision as of 21:06, 5 December 2012
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-	{{Seed}}
	[[Image:1nkq.png\|left\|200px]]		[[Image:1nkq.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_1nkq", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_1nkq\| PDB=1nkq \| SCENE= }}		{{STRUCTURE_1nkq\| PDB=1nkq \| SCENE= }}

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	==About this Structure==		==About this Structure==
-	~~1NKQ~~ is a 6 ~~chains~~ structure ~~of sequences~~ from [http://en.wikipedia.org/wiki/Saccharomyces_cerevisiae Saccharomyces cerevisiae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1NKQ OCA].	+	[[1nkq]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Saccharomyces_cerevisiae Saccharomyces cerevisiae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1NKQ OCA].
	[[Category: Saccharomyces cerevisiae]]		[[Category: Saccharomyces cerevisiae]]
	[[Category: Burley, S K.]]		[[Category: Burley, S K.]]
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	[[Category: Eswaramoorthy, S.]]		[[Category: Eswaramoorthy, S.]]
	[[Category: Kumaran, D.]]		[[Category: Kumaran, D.]]
-	[[Category: NYSGXRC, New York ~~Structural GenomiX~~ Research ~~Consortium~~.]]	+	[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics.]]
	[[Category: Studier, F W.]]		[[Category: Studier, F W.]]
	[[Category: Swaminathan, S.]]		[[Category: Swaminathan, S.]]
	[[Category: Dimer]]		[[Category: Dimer]]
-	[[Category: New york ~~structural genomix~~ research ~~consortium~~]]	+	[[Category: New york sgx research center for structural genomic]]
	[[Category: Nysgxrc]]		[[Category: Nysgxrc]]
	[[Category: Protein structure initiative]]		[[Category: Protein structure initiative]]
	[[Category: Psi]]		[[Category: Psi]]
	[[Category: Structural genomic]]		[[Category: Structural genomic]]
-		+	[[Category: Unknown function]]
-	~~''Page seeded by~~ [~~http~~:~~//oca.weizmann.ac.il/oca OCA~~ ] ~~on Sun Nov 16 11:12:47 2008''~~	+

OCA at 09:12, 16 November 2008

OCA — Sun, 16 Nov 2008 09:12:49 GMT

←Older revision		Revision as of 09:12, 16 November 2008
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	==About this Structure==		==About this Structure==
-	1NKQ is a ~~[[Single protein]]~~ structure of ~~sequence~~ from [http://en.wikipedia.org/wiki/Saccharomyces_cerevisiae Saccharomyces cerevisiae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1NKQ OCA].	+	1NKQ is a 6 chains structure of sequences from [http://en.wikipedia.org/wiki/Saccharomyces_cerevisiae Saccharomyces cerevisiae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1NKQ OCA].
	[[Category: Saccharomyces cerevisiae]]		[[Category: Saccharomyces cerevisiae]]
-	[[Category: Single protein]]
	[[Category: Burley, S K.]]		[[Category: Burley, S K.]]
	[[Category: Daniels, B.]]		[[Category: Daniels, B.]]
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	[[Category: Structural genomic]]		[[Category: Structural genomic]]

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun ~~Sep 28 17~~:34:35 2008''	+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Nov 16 11:12:47 2008''