1o1d - Revision history

OCA at 23:44, 27 December 2023

OCA — Wed, 27 Dec 2023 23:44:15 GMT

←Older revision		Revision as of 23:44, 27 December 2023
Line 4:		Line 4:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1o1d]] is a 32 chain structure with sequence from [https://en.wikipedia.org/wiki/Gallus_gallus Gallus gallus] and [https://en.wikipedia.org/wiki/Oryctolagus_cuniculus Oryctolagus cuniculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1O1D OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1O1D FirstGlance]. <br>		<table><tr><td colspan='2'>[[1o1d]] is a 32 chain structure with sequence from [https://en.wikipedia.org/wiki/Gallus_gallus Gallus gallus] and [https://en.wikipedia.org/wiki/Oryctolagus_cuniculus Oryctolagus cuniculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1O1D OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1O1D FirstGlance]. <br>
-	</td></tr><tr id='~~NonStdRes~~'><td class="sblockLbl"><b>[[~~Non-Standard_Residue~~\|~~NonStd Res~~:]]</b></td><td class="sblockDat"~~><scene name~~=~~'pdbligand=MLY:N-DIMETHYL-LYSINE'>MLY</scene~~></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution\|Resolution]] 70Å</td></tr>
-	<tr id='~~related~~'><td class="sblockLbl"><b>[[~~Related_structure~~\|~~Related~~:]]</b></td><td class="sblockDat"><~~div style~~='~~overflow~~: ~~auto; max~~-~~height: 3em;~~'>~~[[1m8q\|1m8q]], [[1mvw\|1mvw]], [[1o18\|1o18]], [[1o19\|1o19]], [[1o1a\|1o1a]], [[1o1b\|1o1b]], [[1o1c\|1o1c]]~~</~~div~~></td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MLY:N-DIMETHYL-LYSINE'>MLY</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1o1d FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1o1d OCA], [https://pdbe.org/1o1d PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1o1d RCSB], [https://www.ebi.ac.uk/pdbsum/1o1d PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1o1d ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1o1d FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1o1d OCA], [https://pdbe.org/1o1d PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1o1d RCSB], [https://www.ebi.ac.uk/pdbsum/1o1d PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1o1d ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[https://www.uniprot.org/uniprot/ACTS_RABIT ACTS_RABIT]] Actins are highly conserved proteins that are involved in various types of cell motility and are ubiquitously expressed in all eukaryotic cells. [[https://www.uniprot.org/uniprot/MYSS_CHICK MYSS_CHICK]] Muscle contraction. Myosin is a protein that binds to F-actin and has ATPase activity that is activated by F-actin.	+	[https://www.uniprot.org/uniprot/MYSS_CHICK MYSS_CHICK] Muscle contraction. Myosin is a protein that binds to F-actin and has ATPase activity that is activated by F-actin.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 40:		Line 40:
	[[Category: Large Structures]]		[[Category: Large Structures]]
	[[Category: Oryctolagus cuniculus]]		[[Category: Oryctolagus cuniculus]]
-	[[Category: Chen~~, L F~~]]	+	[[Category: Chen LF]]
-	[[Category: Reedy~~, M C~~]]	+	[[Category: Reedy MC]]
-	[[Category: Reedy~~, M K~~]]	+	[[Category: Reedy MK]]
-	[[Category: Taylor~~, K A~~]]	+	[[Category: Taylor KA]]
-	[[Category: Winkler, H]]	+	[[Category: Winkler H]]
-	~~[[Category: Actin-myosin complex in situ in muscle]]~~	+
-	~~[[Category: Contractile protein~~]]	+

OCA at 10:16, 12 January 2022

OCA — Wed, 12 Jan 2022 10:16:39 GMT

←Older revision		Revision as of 10:16, 12 January 2022
Line 3:		Line 3:
	<SX load='1o1d' size='340' side='right' viewer='molstar' caption='[[1o1d]], [[Resolution\|resolution]] 70.00Å' scene=''>		<SX load='1o1d' size='340' side='right' viewer='molstar' caption='[[1o1d]], [[Resolution\|resolution]] 70.00Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1o1d]] is a 32 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Gallus_gallus Gallus gallus] and [~~http~~://en.wikipedia.org/wiki/Oryctolagus_cuniculus Oryctolagus cuniculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1O1D OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=1O1D FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1o1d]] is a 32 chain structure with sequence from [https://en.wikipedia.org/wiki/Gallus_gallus Gallus gallus] and [https://en.wikipedia.org/wiki/Oryctolagus_cuniculus Oryctolagus cuniculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1O1D OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1O1D FirstGlance]. <br>
	</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MLY:N-DIMETHYL-LYSINE'>MLY</scene></td></tr>		</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MLY:N-DIMETHYL-LYSINE'>MLY</scene></td></tr>
-	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1m8q\|1m8q]], [[1mvw\|1mvw]], [[1o18\|1o18]], [[1o19\|1o19]], [[1o1a\|1o1a]], [[1o1b\|1o1b]], [[1o1c\|1o1c]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1m8q\|1m8q]], [[1mvw\|1mvw]], [[1o18\|1o18]], [[1o19\|1o19]], [[1o1a\|1o1a]], [[1o1b\|1o1b]], [[1o1c\|1o1c]]</div></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=1o1d FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1o1d OCA], [~~http~~://pdbe.org/1o1d PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=1o1d RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/1o1d PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=1o1d ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1o1d FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1o1d OCA], [https://pdbe.org/1o1d PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1o1d RCSB], [https://www.ebi.ac.uk/pdbsum/1o1d PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1o1d ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[~~http~~://www.uniprot.org/uniprot/ACTS_RABIT ACTS_RABIT]] Actins are highly conserved proteins that are involved in various types of cell motility and are ubiquitously expressed in all eukaryotic cells. [[~~http~~://www.uniprot.org/uniprot/MYSS_CHICK MYSS_CHICK]] Muscle contraction. Myosin is a protein that binds to F-actin and has ATPase activity that is activated by F-actin.	+	[[https://www.uniprot.org/uniprot/ACTS_RABIT ACTS_RABIT]] Actins are highly conserved proteins that are involved in various types of cell motility and are ubiquitously expressed in all eukaryotic cells. [[https://www.uniprot.org/uniprot/MYSS_CHICK MYSS_CHICK]] Muscle contraction. Myosin is a protein that binds to F-actin and has ATPase activity that is activated by F-actin.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]

OCA at 16:34, 10 April 2020

OCA — Fri, 10 Apr 2020 16:34:09 GMT

←Older revision		Revision as of 16:34, 10 April 2020
Line 3:		Line 3:
	<SX load='1o1d' size='340' side='right' viewer='molstar' caption='[[1o1d]], [[Resolution\|resolution]] 70.00Å' scene=''>		<SX load='1o1d' size='340' side='right' viewer='molstar' caption='[[1o1d]], [[Resolution\|resolution]] 70.00Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1o1d]] is a 32 chain structure with sequence from [http://en.wikipedia.org/wiki/Gallus_gallus Gallus gallus] and [http://en.wikipedia.org/wiki/Oryctolagus_cuniculus Oryctolagus cuniculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1O1D OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1O1D FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1o1d]] is a 32 chain structure with sequence from [http://en.wikipedia.org/wiki/Gallus_gallus Gallus gallus] and [http://en.wikipedia.org/wiki/Oryctolagus_cuniculus Oryctolagus cuniculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1O1D OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=1O1D FirstGlance]. <br>
	</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MLY:N-DIMETHYL-LYSINE'>MLY</scene></td></tr>		</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MLY:N-DIMETHYL-LYSINE'>MLY</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1m8q\|1m8q]], [[1mvw\|1mvw]], [[1o18\|1o18]], [[1o19\|1o19]], [[1o1a\|1o1a]], [[1o1b\|1o1b]], [[1o1c\|1o1c]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1m8q\|1m8q]], [[1mvw\|1mvw]], [[1o18\|1o18]], [[1o19\|1o19]], [[1o1a\|1o1a]], [[1o1b\|1o1b]], [[1o1c\|1o1c]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1o1d FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1o1d OCA], [http://pdbe.org/1o1d PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1o1d RCSB], [http://www.ebi.ac.uk/pdbsum/1o1d PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1o1d ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=1o1d FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1o1d OCA], [http://pdbe.org/1o1d PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1o1d RCSB], [http://www.ebi.ac.uk/pdbsum/1o1d PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1o1d ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==

OCA at 16:47, 6 March 2020

OCA — Fri, 06 Mar 2020 16:47:15 GMT

←Older revision		Revision as of 16:47, 6 March 2020
Line 1:		Line 1:

	==MOLECULAR MODELS OF AVERAGED RIGOR CROSSBRIDGES FROM TOMOGRAMS OF INSECT FLIGHT MUSCLE==		==MOLECULAR MODELS OF AVERAGED RIGOR CROSSBRIDGES FROM TOMOGRAMS OF INSECT FLIGHT MUSCLE==
-	<~~StructureSection~~ load='1o1d' size='340' side='right'caption='[[1o1d]], [[Resolution\|resolution]] 70.00Å' scene=''>	+	<SX load='1o1d' size='340' side='right' viewer='molstar' caption='[[1o1d]], [[Resolution\|resolution]] 70.00Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1o1d]] is a 32 chain structure with sequence from [http://en.wikipedia.org/wiki/Gallus_gallus Gallus gallus] and [http://en.wikipedia.org/wiki/Oryctolagus_cuniculus Oryctolagus cuniculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1O1D OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1O1D FirstGlance]. <br>		<table><tr><td colspan='2'>[[1o1d]] is a 32 chain structure with sequence from [http://en.wikipedia.org/wiki/Gallus_gallus Gallus gallus] and [http://en.wikipedia.org/wiki/Oryctolagus_cuniculus Oryctolagus cuniculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1O1D OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1O1D FirstGlance]. <br>
Line 36:		Line 36:
	<references/>		<references/>
	__TOC__		__TOC__
-	</~~StructureSection~~>	+	</SX>
	[[Category: Gallus gallus]]		[[Category: Gallus gallus]]
	[[Category: Large Structures]]		[[Category: Large Structures]]

OCA at 07:02, 6 November 2019

OCA — Wed, 06 Nov 2019 07:02:49 GMT

←Older revision		Revision as of 07:02, 6 November 2019
Line 1:		Line 1:
-	~~{{Large structure}}~~	+
	==MOLECULAR MODELS OF AVERAGED RIGOR CROSSBRIDGES FROM TOMOGRAMS OF INSECT FLIGHT MUSCLE==		==MOLECULAR MODELS OF AVERAGED RIGOR CROSSBRIDGES FROM TOMOGRAMS OF INSECT FLIGHT MUSCLE==
-	<StructureSection load='1o1d' size='340' side='right' caption='[[1o1d]], [[Resolution\|resolution]] 70.00Å' scene=''>	+	<StructureSection load='1o1d' size='340' side='right'caption='[[1o1d]], [[Resolution\|resolution]] 70.00Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1o1d]] is a 32 chain structure with sequence from [http://en.wikipedia.org/wiki/Gallus_gallus Gallus gallus] and [http://en.wikipedia.org/wiki/Oryctolagus_cuniculus Oryctolagus cuniculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1O1D OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1O1D FirstGlance]. <br>		<table><tr><td colspan='2'>[[1o1d]] is a 32 chain structure with sequence from [http://en.wikipedia.org/wiki/Gallus_gallus Gallus gallus] and [http://en.wikipedia.org/wiki/Oryctolagus_cuniculus Oryctolagus cuniculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1O1D OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1O1D FirstGlance]. <br>
Line 8:		Line 8:
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1o1d FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1o1d OCA], [http://pdbe.org/1o1d PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1o1d RCSB], [http://www.ebi.ac.uk/pdbsum/1o1d PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1o1d ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1o1d FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1o1d OCA], [http://pdbe.org/1o1d PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1o1d RCSB], [http://www.ebi.ac.uk/pdbsum/1o1d PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1o1d ProSAT]</span></td></tr>
	</table>		</table>
-	{{Large structure}}
	== Function ==		== Function ==
	[[http://www.uniprot.org/uniprot/ACTS_RABIT ACTS_RABIT]] Actins are highly conserved proteins that are involved in various types of cell motility and are ubiquitously expressed in all eukaryotic cells. [[http://www.uniprot.org/uniprot/MYSS_CHICK MYSS_CHICK]] Muscle contraction. Myosin is a protein that binds to F-actin and has ATPase activity that is activated by F-actin.		[[http://www.uniprot.org/uniprot/ACTS_RABIT ACTS_RABIT]] Actins are highly conserved proteins that are involved in various types of cell motility and are ubiquitously expressed in all eukaryotic cells. [[http://www.uniprot.org/uniprot/MYSS_CHICK MYSS_CHICK]] Muscle contraction. Myosin is a protein that binds to F-actin and has ATPase activity that is activated by F-actin.
Line 32:		Line 31:

	==See Also==		==See Also==
-	*[[Actin\|Actin]]	+	*[[Actin 3D structures\|Actin 3D structures]]
-	*[[Myosin\|Myosin]]	+	*[[Myosin 3D Structures\|Myosin 3D Structures]]
	== References ==		== References ==
	<references/>		<references/>
Line 39:		Line 38:
	</StructureSection>		</StructureSection>
	[[Category: Gallus gallus]]		[[Category: Gallus gallus]]
		+	[[Category: Large Structures]]
	[[Category: Oryctolagus cuniculus]]		[[Category: Oryctolagus cuniculus]]
	[[Category: Chen, L F]]		[[Category: Chen, L F]]

OCA at 07:47, 18 July 2018

OCA — Wed, 18 Jul 2018 07:47:48 GMT

←Older revision		Revision as of 07:47, 18 July 2018
Line 15:		Line 15:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/o1/1o1d_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/o1/1o1d_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
Line 30:		Line 30:
	</div>		</div>
	<div class="pdbe-citations 1o1d" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 1o1d" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[Actin\|Actin]]
		+	*[[Myosin\|Myosin]]
	== References ==		== References ==
	<references/>		<references/>

OCA at 10:00, 1 November 2017

OCA — Wed, 01 Nov 2017 10:00:41 GMT

←Older revision		Revision as of 10:00, 1 November 2017
Line 1:		Line 1:
		+	{{Large structure}}
	==MOLECULAR MODELS OF AVERAGED RIGOR CROSSBRIDGES FROM TOMOGRAMS OF INSECT FLIGHT MUSCLE==		==MOLECULAR MODELS OF AVERAGED RIGOR CROSSBRIDGES FROM TOMOGRAMS OF INSECT FLIGHT MUSCLE==
	<StructureSection load='1o1d' size='340' side='right' caption='[[1o1d]], [[Resolution\|resolution]] 70.00Å' scene=''>		<StructureSection load='1o1d' size='340' side='right' caption='[[1o1d]], [[Resolution\|resolution]] 70.00Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1o1d]] is a 32 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Chick Chick~~] and [http://en.wikipedia.org/wiki/Oryctolagus_cuniculus Oryctolagus cuniculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1O1D OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1O1D FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1o1d]] is a 32 chain structure with sequence from [http://en.wikipedia.org/wiki/Gallus_gallus Gallus gallus] and [http://en.wikipedia.org/wiki/Oryctolagus_cuniculus Oryctolagus cuniculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1O1D OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1O1D FirstGlance]. <br>
	</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MLY:N-DIMETHYL-LYSINE'>MLY</scene></td></tr>		</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MLY:N-DIMETHYL-LYSINE'>MLY</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1m8q\|1m8q]], [[1mvw\|1mvw]], [[1o18\|1o18]], [[1o19\|1o19]], [[1o1a\|1o1a]], [[1o1b\|1o1b]], [[1o1c\|1o1c]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1m8q\|1m8q]], [[1mvw\|1mvw]], [[1o18\|1o18]], [[1o19\|1o19]], [[1o1a\|1o1a]], [[1o1b\|1o1b]], [[1o1c\|1o1c]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1o1d FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1o1d OCA], [http://pdbe.org/1o1d PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1o1d RCSB], [http://www.ebi.ac.uk/pdbsum/1o1d PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1o1d FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1o1d OCA], [http://pdbe.org/1o1d PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1o1d RCSB], [http://www.ebi.ac.uk/pdbsum/1o1d PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1o1d ProSAT]</span></td></tr>
	</table>		</table>
	{{Large structure}}		{{Large structure}}
Line 18:		Line 19:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1o1d ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
Line 29:		Line 30:
	</div>		</div>
	<div class="pdbe-citations 1o1d" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 1o1d" style="background-color:#fffaf0;"></div>
-
-	==See Also==
-	*[[Actin\|Actin]]
-	*[[Myosin\|Myosin]]
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Chick~~]]	+	[[Category: Gallus gallus]]
	[[Category: Oryctolagus cuniculus]]		[[Category: Oryctolagus cuniculus]]
	[[Category: Chen, L F]]		[[Category: Chen, L F]]

OCA at 15:58, 11 September 2015

OCA — Fri, 11 Sep 2015 15:58:24 GMT

←Older revision		Revision as of 15:58, 11 September 2015
Line 2:		Line 2:
	<StructureSection load='1o1d' size='340' side='right' caption='[[1o1d]], [[Resolution\|resolution]] 70.00Å' scene=''>		<StructureSection load='1o1d' size='340' side='right' caption='[[1o1d]], [[Resolution\|resolution]] 70.00Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1o1d]] is a 32 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Gallus_gallus Gallus gallus~~] and [http://en.wikipedia.org/wiki/Oryctolagus_cuniculus Oryctolagus cuniculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1O1D OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1O1D FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1o1d]] is a 32 chain structure with sequence from [http://en.wikipedia.org/wiki/Chick Chick] and [http://en.wikipedia.org/wiki/Oryctolagus_cuniculus Oryctolagus cuniculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1O1D OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1O1D FirstGlance]. <br>
	</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MLY:N-DIMETHYL-LYSINE'>MLY</scene></td></tr>		</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MLY:N-DIMETHYL-LYSINE'>MLY</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1m8q\|1m8q]], [[1mvw\|1mvw]], [[1o18\|1o18]], [[1o19\|1o19]], [[1o1a\|1o1a]], [[1o1b\|1o1b]], [[1o1c\|1o1c]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1m8q\|1m8q]], [[1mvw\|1mvw]], [[1o18\|1o18]], [[1o19\|1o19]], [[1o1a\|1o1a]], [[1o1b\|1o1b]], [[1o1c\|1o1c]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1o1d FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1o1d OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1o1d RCSB], [http://www.ebi.ac.uk/pdbsum/1o1d PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1o1d FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1o1d OCA], [http://pdbe.org/1o1d PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1o1d RCSB], [http://www.ebi.ac.uk/pdbsum/1o1d PDBsum]</span></td></tr>
	</table>		</table>
		+	{{Large structure}}
	== Function ==		== Function ==
	[[http://www.uniprot.org/uniprot/ACTS_RABIT ACTS_RABIT]] Actins are highly conserved proteins that are involved in various types of cell motility and are ubiquitously expressed in all eukaryotic cells. [[http://www.uniprot.org/uniprot/MYSS_CHICK MYSS_CHICK]] Muscle contraction. Myosin is a protein that binds to F-actin and has ATPase activity that is activated by F-actin.		[[http://www.uniprot.org/uniprot/ACTS_RABIT ACTS_RABIT]] Actins are highly conserved proteins that are involved in various types of cell motility and are ubiquitously expressed in all eukaryotic cells. [[http://www.uniprot.org/uniprot/MYSS_CHICK MYSS_CHICK]] Muscle contraction. Myosin is a protein that binds to F-actin and has ATPase activity that is activated by F-actin.
Line 27:		Line 28:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 1o1d" style="background-color:#fffaf0;"></div>

	==See Also==		==See Also==
Line 35:		Line 37:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Gallus gallus~~]]	+	[[Category: Chick]]
	[[Category: Oryctolagus cuniculus]]		[[Category: Oryctolagus cuniculus]]
	[[Category: Chen, L F]]		[[Category: Chen, L F]]

OCA at 18:42, 25 December 2014

OCA — Thu, 25 Dec 2014 18:42:34 GMT

←Older revision		Revision as of 18:42, 25 December 2014
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1o1d]] is a 32 chain structure with sequence from [http://en.wikipedia.org/wiki/Gallus_gallus Gallus gallus] and [http://en.wikipedia.org/wiki/Oryctolagus_cuniculus Oryctolagus cuniculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1O1D OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1O1D FirstGlance]. <br>		<table><tr><td colspan='2'>[[1o1d]] is a 32 chain structure with sequence from [http://en.wikipedia.org/wiki/Gallus_gallus Gallus gallus] and [http://en.wikipedia.org/wiki/Oryctolagus_cuniculus Oryctolagus cuniculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1O1D OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1O1D FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MLY:N-DIMETHYL-LYSINE'>MLY</scene></td></tr>	+	</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MLY:N-DIMETHYL-LYSINE'>MLY</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1m8q\|1m8q]], [[1mvw\|1mvw]], [[1o18\|1o18]], [[1o19\|1o19]], [[1o1a\|1o1a]], [[1o1b\|1o1b]], [[1o1c\|1o1c]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1m8q\|1m8q]], [[1mvw\|1mvw]], [[1o18\|1o18]], [[1o19\|1o19]], [[1o1a\|1o1a]], [[1o1b\|1o1b]], [[1o1c\|1o1c]]</td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1o1d FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1o1d OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1o1d RCSB], [http://www.ebi.ac.uk/pdbsum/1o1d PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1o1d FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1o1d OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1o1d RCSB], [http://www.ebi.ac.uk/pdbsum/1o1d PDBsum]</span></td></tr>
-	<table>	+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/ACTS_RABIT ACTS_RABIT]] Actins are highly conserved proteins that are involved in various types of cell motility and are ubiquitously expressed in all eukaryotic cells. [[http://www.uniprot.org/uniprot/MYSS_CHICK MYSS_CHICK]] Muscle contraction. Myosin is a protein that binds to F-actin and has ATPase activity that is activated by F-actin.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 35:		Line 37:
	[[Category: Gallus gallus]]		[[Category: Gallus gallus]]
	[[Category: Oryctolagus cuniculus]]		[[Category: Oryctolagus cuniculus]]
-	[[Category: Chen, L F.]]	+	[[Category: Chen, L F]]
-	[[Category: Reedy, M C.]]	+	[[Category: Reedy, M C]]
-	[[Category: Reedy, M K.]]	+	[[Category: Reedy, M K]]
-	[[Category: Taylor, K A.]]	+	[[Category: Taylor, K A]]
-	[[Category: Winkler, H.]]	+	[[Category: Winkler, H]]
	[[Category: Actin-myosin complex in situ in muscle]]		[[Category: Actin-myosin complex in situ in muscle]]
	[[Category: Contractile protein]]		[[Category: Contractile protein]]

OCA at 17:23, 29 September 2014

OCA — Mon, 29 Sep 2014 17:23:51 GMT

←Older revision		Revision as of 17:23, 29 September 2014
Line 1:		Line 1:
-	~~{{Large structure}}~~	+	==MOLECULAR MODELS OF AVERAGED RIGOR CROSSBRIDGES FROM TOMOGRAMS OF INSECT FLIGHT MUSCLE==
-	~~{{STRUCTURE_1o1d\| PDB=1o1d \| SCENE= }}~~	+	<StructureSection load='1o1d' size='340' side='right' caption='[[1o1d]], [[Resolution\|resolution]] 70.00Å' scene=''>
-	===MOLECULAR MODELS OF AVERAGED RIGOR CROSSBRIDGES FROM TOMOGRAMS OF INSECT FLIGHT MUSCLE===	+	== Structural highlights ==
-	~~{{ABSTRACT_PUBMED_12160705}}~~	+	<table><tr><td colspan='2'>[[1o1d]] is a 32 chain structure with sequence from [http://en.wikipedia.org/wiki/Gallus_gallus Gallus gallus] and [http://en.wikipedia.org/wiki/Oryctolagus_cuniculus Oryctolagus cuniculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1O1D OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1O1D FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MLY:N-DIMETHYL-LYSINE'>MLY</scene></td></tr>
		+	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1m8q\|1m8q]], [[1mvw\|1mvw]], [[1o18\|1o18]], [[1o19\|1o19]], [[1o1a\|1o1a]], [[1o1b\|1o1b]], [[1o1c\|1o1c]]</td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1o1d FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1o1d OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1o1d RCSB], [http://www.ebi.ac.uk/pdbsum/1o1d PDBsum]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/o1/1o1d_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Electron tomography, correspondence analysis, molecular model building, and real-space refinement provide detailed 3-D structures for in situ myosin crossbridges in the nucleotide-free state (rigor), thought to represent the end of the power stroke. Unaveraged tomograms from a 25-nm longitudinal section of insect flight muscle preserved native structural variation. Recurring crossbridge motifs that repeat every 38.7 nm along the actin filament were extracted from the tomogram and classified by correspondence analysis into 25 class averages, which improved the signal to noise ratio. Models based on the atomic structures of actin and of myosin subfragment 1 were rebuilt to fit 11 class averages. A real-space refinement procedure was applied to quantitatively fit the reconstructions and to minimize steric clashes between domains introduced during the fitting. These combined procedures show that no single myosin head structure can fit all the in situ crossbridges. The validity of the approach is supported by agreement of these atomic models with fluorescent probe data from vertebrate muscle as well as with data from regulatory light chain crosslinking between heads of smooth muscle heavy meromyosin when bound to actin.

-	~~==About this Structure==~~	+	Molecular modeling of averaged rigor crossbridges from tomograms of insect flight muscle.,Chen LF, Winkler H, Reedy MK, Reedy MC, Taylor KA J Struct Biol. 2002 Apr-May;138(1-2):92-104. PMID:12160705<ref>PMID:12160705</ref>
-	~~[[1o1d]] is a 32 chain structure with sequence~~ from ~~[http://en~~.~~wikipedia~~.~~org/wiki/Gallus_gallus Gallus gallus] and [http~~:~~//en~~.~~wikipedia.org/wiki/Oryctolagus_cuniculus Oryctolagus cuniculus]. Full crystallographic information is available from [http~~://~~oca~~.~~weizmann~~.ac.il/~~oca-bin/ocashort?id=1O1D OCA].~~	+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>

	==See Also==		==See Also==
	*[[Actin\|Actin]]		*[[Actin\|Actin]]
	*[[Myosin\|Myosin]]		*[[Myosin\|Myosin]]
-		+	== References ==
-	==~~Reference~~==	+	<references/>
-	<~~ref group="xtra">PMID:012160705<~~/~~ref~~><~~references group="xtra"~~/>	+	__TOC__
		+	</StructureSection>
	[[Category: Gallus gallus]]		[[Category: Gallus gallus]]
	[[Category: Oryctolagus cuniculus]]		[[Category: Oryctolagus cuniculus]]