1o59 - Revision history

OCA at 06:40, 25 January 2023

OCA — Wed, 25 Jan 2023 06:40:31 GMT

←Older revision		Revision as of 06:40, 25 January 2023
Line 3:		Line 3:
	<StructureSection load='1o59' size='340' side='right'caption='[[1o59]], [[Resolution\|resolution]] 2.40Å' scene=''>		<StructureSection load='1o59' size='340' side='right'caption='[[1o59]], [[Resolution\|resolution]] 2.40Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1o59]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Atcc_18824 Atcc 18824~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1O59 OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=1O59 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1o59]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Saccharomyces_cerevisiae Saccharomyces cerevisiae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1O59 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1O59 FirstGlance]. <br>
-	</td></tr><tr id='~~NonStdRes~~'><td class="sblockLbl"><b>[[~~Non-Standard_Residue~~\|~~NonStd Res~~:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene~~></td></tr>~~	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">YIR029W ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=4932 ATCC 18824])</td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1o59 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1o59 OCA], [https://pdbe.org/1o59 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1o59 RCSB], [https://www.ebi.ac.uk/pdbsum/1o59 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1o59 ProSAT], [https://www.topsan.org/Proteins/JCSG/1o59 TOPSAN]</span></td></tr>
-	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Allantoicase Allantoicase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.5.3.4 3.5.3.4] </span></td></tr>	+
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=1o59 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1o59 OCA], [~~http~~://pdbe.org/1o59 PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=1o59 RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/1o59 PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=1o59 ProSAT], [~~http~~://www.topsan.org/Proteins/JCSG/1o59 TOPSAN]</span></td></tr>	+
	</table>		</table>
	== Function ==		== Function ==
-	[~~[http~~://www.uniprot.org/uniprot/ALLC_YEAST ALLC_YEAST]] Utilization of purines as secondary nitrogen sources, when primary sources are limiting.	+	[https://www.uniprot.org/uniprot/ALLC_YEAST ALLC_YEAST] Utilization of purines as secondary nitrogen sources, when primary sources are limiting.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 23:		Line 21:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Allantoicase]]
-	[[Category: Atcc 18824]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Structural genomic]]~~	+	[[Category: Saccharomyces cerevisiae]]
-	~~[[Category: Hydrolase]]~~	+
-	~~[[Category: Jcsg]]~~	+
-	~~[[Category: PSI, Protein structure initiative]]~~	+
-	~~[[Category: Yir029w~~]]	+

OCA at 09:03, 2 December 2020

OCA — Wed, 02 Dec 2020 09:03:44 GMT

←Older revision		Revision as of 09:03, 2 December 2020
Line 1:		Line 1:

	==Crystal structure of Allantoicase (yir029w) from Saccharomyces cerevisiae at 2.40 A resolution==		==Crystal structure of Allantoicase (yir029w) from Saccharomyces cerevisiae at 2.40 A resolution==
-	<StructureSection load='1o59' size='340' side='right' caption='[[1o59]], [[Resolution\|resolution]] 2.40Å' scene=''>	+	<StructureSection load='1o59' size='340' side='right'caption='[[1o59]], [[Resolution\|resolution]] 2.40Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1o59]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_18824 Atcc 18824]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1O59 OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1O59 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1o59]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_18824 Atcc 18824]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1O59 OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=1O59 FirstGlance]. <br>
	</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">YIR029W ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=4932 ATCC 18824])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">YIR029W ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=4932 ATCC 18824])</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Allantoicase Allantoicase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.5.3.4 3.5.3.4] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Allantoicase Allantoicase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.5.3.4 3.5.3.4] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1o59 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1o59 OCA], [http://pdbe.org/1o59 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1o59 RCSB], [http://www.ebi.ac.uk/pdbsum/1o59 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1o59 ProSAT], [http://www.topsan.org/Proteins/JCSG/1o59 TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=1o59 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1o59 OCA], [http://pdbe.org/1o59 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1o59 RCSB], [http://www.ebi.ac.uk/pdbsum/1o59 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1o59 ProSAT], [http://www.topsan.org/Proteins/JCSG/1o59 TOPSAN]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 25:		Line 25:
	[[Category: Allantoicase]]		[[Category: Allantoicase]]
	[[Category: Atcc 18824]]		[[Category: Atcc 18824]]
		+	[[Category: Large Structures]]
	[[Category: Structural genomic]]		[[Category: Structural genomic]]
	[[Category: Hydrolase]]		[[Category: Hydrolase]]

OCA at 06:29, 20 December 2017

OCA — Wed, 20 Dec 2017 06:29:48 GMT

←Older revision		Revision as of 06:29, 20 December 2017
Line 1:		Line 1:
		+
	==Crystal structure of Allantoicase (yir029w) from Saccharomyces cerevisiae at 2.40 A resolution==		==Crystal structure of Allantoicase (yir029w) from Saccharomyces cerevisiae at 2.40 A resolution==
	<StructureSection load='1o59' size='340' side='right' caption='[[1o59]], [[Resolution\|resolution]] 2.40Å' scene=''>		<StructureSection load='1o59' size='340' side='right' caption='[[1o59]], [[Resolution\|resolution]] 2.40Å' scene=''>
Line 6:		Line 7:
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">YIR029W ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=4932 ATCC 18824])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">YIR029W ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=4932 ATCC 18824])</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Allantoicase Allantoicase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.5.3.4 3.5.3.4] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Allantoicase Allantoicase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.5.3.4 3.5.3.4] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1o59 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1o59 OCA], [http://pdbe.org/1o59 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1o59 RCSB], [http://www.ebi.ac.uk/pdbsum/1o59 PDBsum], [http://www.topsan.org/Proteins/JCSG/1o59 TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1o59 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1o59 OCA], [http://pdbe.org/1o59 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1o59 RCSB], [http://www.ebi.ac.uk/pdbsum/1o59 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1o59 ProSAT], [http://www.topsan.org/Proteins/JCSG/1o59 TOPSAN]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 14:		Line 15:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/o5/1o59_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/o5/1o59_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>

OCA at 05:01, 8 February 2016

OCA — Mon, 08 Feb 2016 05:01:34 GMT

←Older revision		Revision as of 05:01, 8 February 2016
Line 18:		Line 18:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1o59 ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	__TOC__		__TOC__

OCA at 08:08, 10 September 2015

OCA — Thu, 10 Sep 2015 08:08:10 GMT

←Older revision		Revision as of 08:08, 10 September 2015
Line 2:		Line 2:
	<StructureSection load='1o59' size='340' side='right' caption='[[1o59]], [[Resolution\|resolution]] 2.40Å' scene=''>		<StructureSection load='1o59' size='340' side='right' caption='[[1o59]], [[Resolution\|resolution]] 2.40Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1o59]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Saccharomyces_cerevisiae Saccharomyces cerevisiae~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1O59 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1O59 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1o59]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_18824 Atcc 18824]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1O59 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1O59 FirstGlance]. <br>
	</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">YIR029W ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=4932 ~~Saccharomyces cerevisiae~~])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">YIR029W ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=4932 ATCC 18824])</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Allantoicase Allantoicase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.5.3.4 3.5.3.4] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Allantoicase Allantoicase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.5.3.4 3.5.3.4] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1o59 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1o59 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1o59 RCSB], [http://www.ebi.ac.uk/pdbsum/1o59 PDBsum], [http://www.topsan.org/Proteins/JCSG/1o59 TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1o59 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1o59 OCA], [http://pdbe.org/1o59 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1o59 RCSB], [http://www.ebi.ac.uk/pdbsum/1o59 PDBsum], [http://www.topsan.org/Proteins/JCSG/1o59 TOPSAN]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/ALLC_YEAST ALLC_YEAST]] Utilization of purines as secondary nitrogen sources, when primary sources are limiting.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 21:		Line 23:
	</StructureSection>		</StructureSection>
	[[Category: Allantoicase]]		[[Category: Allantoicase]]
-	[[Category: ~~Saccharomyces cerevisiae~~]]	+	[[Category: Atcc 18824]]
	[[Category: Structural genomic]]		[[Category: Structural genomic]]
	[[Category: Hydrolase]]		[[Category: Hydrolase]]

OCA at 17:05, 5 January 2015

OCA — Mon, 05 Jan 2015 17:05:34 GMT

←Older revision		Revision as of 17:05, 5 January 2015
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1o59]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Saccharomyces_cerevisiae Saccharomyces cerevisiae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1O59 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1O59 FirstGlance]. <br>		<table><tr><td colspan='2'>[[1o59]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Saccharomyces_cerevisiae Saccharomyces cerevisiae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1O59 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1O59 FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>	+	</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">YIR029W ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=4932 Saccharomyces cerevisiae])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">YIR029W ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=4932 Saccharomyces cerevisiae])</td></tr>
-	<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Allantoicase Allantoicase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.5.3.4 3.5.3.4] </span></td></tr>	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Allantoicase Allantoicase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.5.3.4 3.5.3.4] </span></td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1o59 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1o59 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1o59 RCSB], [http://www.ebi.ac.uk/pdbsum/1o59 PDBsum], [http://www.topsan.org/Proteins/JCSG/1o59 TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1o59 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1o59 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1o59 RCSB], [http://www.ebi.ac.uk/pdbsum/1o59 PDBsum], [http://www.topsan.org/Proteins/JCSG/1o59 TOPSAN]</span></td></tr>
-	<table>	+	</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 22:		Line 22:
	[[Category: Allantoicase]]		[[Category: Allantoicase]]
	[[Category: Saccharomyces cerevisiae]]		[[Category: Saccharomyces cerevisiae]]
-	[[Category: ~~JCSG, Joint Center for~~ Structural ~~Genomics.]]~~	+	[[Category: Structural genomic]]
-	~~[[Category: Allantoicase~~]]	+
	[[Category: Hydrolase]]		[[Category: Hydrolase]]
	[[Category: Jcsg]]		[[Category: Jcsg]]
-	[[Category: ~~Joint center for structural genomic]]~~	+	[[Category: PSI, Protein structure initiative]]
-	~~[[Category:~~ Protein structure initiative]]	+
-	~~[[Category: Psi]]~~	+
-	~~[[Category: Structural genomic~~]]	+
	[[Category: Yir029w]]		[[Category: Yir029w]]

OCA at 16:17, 28 September 2014

OCA — Sun, 28 Sep 2014 16:17:08 GMT

←Older revision		Revision as of 16:17, 28 September 2014
Line 1:		Line 1:
-	~~[[Image:1o59.png\|left\|200px]]~~	+	==Crystal structure of Allantoicase (yir029w) from Saccharomyces cerevisiae at 2.40 A resolution==
-		+	<StructureSection load='1o59' size='340' side='right' caption='[[1o59]], [[Resolution\|resolution]] 2.40Å' scene=''>
-	~~{{STRUCTURE_1o59\| PDB=1o59 \| SCENE= }}~~	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[1o59]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Saccharomyces_cerevisiae Saccharomyces cerevisiae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1O59 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1O59 FirstGlance]. <br>
-	===Crystal structure of Allantoicase (yir029w) from Saccharomyces cerevisiae at 2.40 A resolution===	+	</td></tr><tr><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-		+	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">YIR029W ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=4932 Saccharomyces cerevisiae])</td></tr>
-		+	<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Allantoicase Allantoicase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.5.3.4 3.5.3.4] </span></td></tr>
-	==~~About this Structure~~==	+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1o59 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1o59 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1o59 RCSB], [http://www.ebi.ac.uk/pdbsum/1o59 PDBsum], [http://www.topsan.org/Proteins/JCSG/1o59 TOPSAN]</span></td></tr>
-	[[1o59]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Saccharomyces_cerevisiae Saccharomyces cerevisiae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1O59 OCA].	+	<table>
-		+	== Evolutionary Conservation ==
-	==~~Reference~~==	+	[[Image:Consurf_key_small.gif\|200px\|right]]
-	<~~ref group~~="~~xtra~~">~~PMID~~:~~015229895~~</~~ref~~><~~references group~~="~~xtra~~"/>	+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/o5/1o59_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	__TOC__
		+	</StructureSection>
	[[Category: Allantoicase]]		[[Category: Allantoicase]]
	[[Category: Saccharomyces cerevisiae]]		[[Category: Saccharomyces cerevisiae]]

OCA: Protected "1o59" [edit=sysop:move=sysop]

OCA — Wed, 05 Dec 2012 21:23:23 GMT

Protected "1o59" [edit=sysop:move=sysop]

←Older revision

Revision as of 21:23, 5 December 2012

OCA at 21:23, 5 December 2012

OCA — Wed, 05 Dec 2012 21:23:20 GMT

←Older revision		Revision as of 21:23, 5 December 2012
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-	{{Seed}}
	[[Image:1o59.png\|left\|200px]]		[[Image:1o59.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_1o59", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
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	{{STRUCTURE_1o59\| PDB=1o59 \| SCENE= }}		{{STRUCTURE_1o59\| PDB=1o59 \| SCENE= }}

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	==About this Structure==		==About this Structure==
-	~~1O59~~ is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Saccharomyces_cerevisiae Saccharomyces cerevisiae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1O59 OCA].	+	[[1o59]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Saccharomyces_cerevisiae Saccharomyces cerevisiae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1O59 OCA].

	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~15229895~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:015229895</ref><references group="xtra"/>
	[[Category: Allantoicase]]		[[Category: Allantoicase]]
	[[Category: Saccharomyces cerevisiae]]		[[Category: Saccharomyces cerevisiae]]
	[[Category: JCSG, Joint Center for Structural Genomics.]]		[[Category: JCSG, Joint Center for Structural Genomics.]]
	[[Category: Allantoicase]]		[[Category: Allantoicase]]
		+	[[Category: Hydrolase]]
	[[Category: Jcsg]]		[[Category: Jcsg]]
	[[Category: Joint center for structural genomic]]		[[Category: Joint center for structural genomic]]
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	[[Category: Structural genomic]]		[[Category: Structural genomic]]
	[[Category: Yir029w]]		[[Category: Yir029w]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Feb 16 18:59:53 2009''

OCA at 16:59, 16 February 2009

OCA — Mon, 16 Feb 2009 16:59:54 GMT

←Older revision		Revision as of 16:59, 16 February 2009
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	==Reference==		==Reference==
-	Crystal structure of an allantoicase (YIR029W) from Saccharomyces cerevisiae at 2.4 A resolution., Xu Q, Schwarzenbacher R, Page R, Sims E, Abdubek P, Ambing E, Biorac T, Brinen LS, Cambell J, Canaves JM, Chiu HJ, Dai X, Deacon AM, DiDonato M, Elsliger MA, Floyd R, Godzik A, Grittini C, Grzechnik SK, Hampton E, Jaroszewski L, Karlak C, Klock HE, Koesema E, Kovarik JS, Kreusch A, Kuhn P, Lesley SA, Levin I, McMullan D, McPhillips TM, Miller MD, Morse A, Moy K, Ouyang J, Quijano K, Reyes R, Rezezadeh F, Robb A, Spraggon G, Stevens RC, van den Bedem H, Velasquez J, Vincent J, von Delft F, Wang X, West B, Wolf G, Hodgson KO, Wooley J, Wilson IA, Proteins. 2004 Aug 15;56(3):619-24. PMID:~~[http:~~//~~www.ncbi.nlm.nih.gov/pubmed/15229895 15229895]~~	+	<ref group="xtra">PMID:15229895</ref><references group="xtra"/>
	[[Category: Allantoicase]]		[[Category: Allantoicase]]
	[[Category: Saccharomyces cerevisiae]]		[[Category: Saccharomyces cerevisiae]]
Line 29:		Line 29:
	[[Category: Yir029w]]		[[Category: Yir029w]]

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on ~~Sun Nov 16~~ 16:42:~~16 2008~~''	+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Feb 16 18:59:53 2009''