1o7u - Revision history

OCA at 12:29, 13 December 2023

OCA — Wed, 13 Dec 2023 12:29:58 GMT

←Older revision		Revision as of 12:29, 13 December 2023
Line 3:		Line 3:
	<StructureSection load='1o7u' size='340' side='right'caption='[[1o7u]], [[Resolution\|resolution]] 1.50Å' scene=''>		<StructureSection load='1o7u' size='340' side='right'caption='[[1o7u]], [[Resolution\|resolution]] 1.50Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1o7u]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Crifa Crifa~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1O7U OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1O7U FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1o7u]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Crithidia_fasciculata Crithidia fasciculata]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1O7U OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1O7U FirstGlance]. <br>
-	</td></tr><tr id='~~related~~'><td class="sblockLbl"><b>[[~~Related_structure~~\|~~Related~~:]]</b></td><td class="sblockDat">~~<div style='overflow: auto; max~~-~~height: 3em;'>[[1fg4\|1fg4]]~~, [[~~1i5g~~\|~~1i5g~~]]~~, [[1o6j\|1o6j]], [[1o81\|1o81]], [[1oc8\|1oc8]], [[1oc9\|1oc9]], [[1ewx\|1ewx]], [[1ezk\|1ezk]], [[1o73\|1o73]], [[1o85\|1o85]], [[1o8w\|1o8w]], [[1o8x\|1o8x]], [[1qk8\|1qk8]]</div>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.5Å</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1o7u FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1o7u OCA], [https://pdbe.org/1o7u PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1o7u RCSB], [https://www.ebi.ac.uk/pdbsum/1o7u PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1o7u ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1o7u FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1o7u OCA], [https://pdbe.org/1o7u PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1o7u RCSB], [https://www.ebi.ac.uk/pdbsum/1o7u PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1o7u ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/O96438_CRIFA O96438_CRIFA]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Crifa]]
-	[[Category: Large Structures]]
-	[[Category: Alphey, M S]]
-	[[Category: Bond, C S]]
-	[[Category: Hunter, W N]]
-	[[Category: McSweeney, S M]]
-	[[Category: Anomalous dispersion]]
	[[Category: Crithidia fasciculata]]		[[Category: Crithidia fasciculata]]
-	[[Category: ~~Disulfide bonds tryparedoxin~~]]	+	[[Category: Large Structures]]
-	[[Category: ~~Electron transport~~]]	+	[[Category: Alphey MS]]
-	[[Category: ~~Oxidative stress~~]]	+	[[Category: Bond CS]]
-	[[Category: ~~Oxidoreductase~~]]	+	[[Category: Hunter WN]]
-	[[Category: ~~Synchrotron radiation]]~~	+	[[Category: McSweeney SM]]
-	~~[[Category: Thioredoxin]]~~	+
-	~~[[Category: Trypanosome]]~~	+
-	~~[[Category: Tryparedoxin-i~~]]	+

OCA at 07:09, 25 August 2021

OCA — Wed, 25 Aug 2021 07:09:38 GMT

←Older revision		Revision as of 07:09, 25 August 2021
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	<StructureSection load='1o7u' size='340' side='right'caption='[[1o7u]], [[Resolution\|resolution]] 1.50Å' scene=''>		<StructureSection load='1o7u' size='340' side='right'caption='[[1o7u]], [[Resolution\|resolution]] 1.50Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1o7u]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Crifa Crifa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1O7U OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1O7U FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1o7u]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Crifa Crifa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1O7U OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1O7U FirstGlance]. <br>
-	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1fg4\|1fg4]], [[1i5g\|1i5g]], [[1o6j\|1o6j]], [[1o81\|1o81]], [[1oc8\|1oc8]], [[1oc9\|1oc9]], [[1ewx\|1ewx]], [[1ezk\|1ezk]], [[1o73\|1o73]], [[1o85\|1o85]], [[1o8w\|1o8w]], [[1o8x\|1o8x]], [[1qk8\|1qk8]]</td></tr>	+	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1fg4\|1fg4]], [[1i5g\|1i5g]], [[1o6j\|1o6j]], [[1o81\|1o81]], [[1oc8\|1oc8]], [[1oc9\|1oc9]], [[1ewx\|1ewx]], [[1ezk\|1ezk]], [[1o73\|1o73]], [[1o85\|1o85]], [[1o8w\|1o8w]], [[1o8x\|1o8x]], [[1qk8\|1qk8]]</div></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1o7u FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1o7u OCA], [~~http~~://pdbe.org/1o7u PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=1o7u RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/1o7u PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=1o7u ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1o7u FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1o7u OCA], [https://pdbe.org/1o7u PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1o7u RCSB], [https://www.ebi.ac.uk/pdbsum/1o7u PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1o7u ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==

OCA at 18:13, 20 November 2019

OCA — Wed, 20 Nov 2019 18:13:41 GMT

←Older revision		Revision as of 18:13, 20 November 2019
Line 1:		Line 1:

	==Radiation induced tryparedoxin-I==		==Radiation induced tryparedoxin-I==
-	<StructureSection load='1o7u' size='340' side='right' caption='[[1o7u]], [[Resolution\|resolution]] 1.50Å' scene=''>	+	<StructureSection load='1o7u' size='340' side='right'caption='[[1o7u]], [[Resolution\|resolution]] 1.50Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1o7u]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Crifa Crifa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1O7U OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1O7U FirstGlance]. <br>		<table><tr><td colspan='2'>[[1o7u]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Crifa Crifa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1O7U OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1O7U FirstGlance]. <br>
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	</StructureSection>		</StructureSection>
	[[Category: Crifa]]		[[Category: Crifa]]
		+	[[Category: Large Structures]]
	[[Category: Alphey, M S]]		[[Category: Alphey, M S]]
	[[Category: Bond, C S]]		[[Category: Bond, C S]]

OCA at 07:02, 7 February 2018

OCA — Wed, 07 Feb 2018 07:02:48 GMT

←Older revision		Revision as of 07:02, 7 February 2018
Line 1:		Line 1:
-	==~~RADIATION INDUCED TRYPAREDOXIN~~-I==	+
		+	==Radiation induced tryparedoxin-I==
	<StructureSection load='1o7u' size='340' side='right' caption='[[1o7u]], [[Resolution\|resolution]] 1.50Å' scene=''>		<StructureSection load='1o7u' size='340' side='right' caption='[[1o7u]], [[Resolution\|resolution]] 1.50Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1o7u]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Crifa Crifa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1O7U OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1O7U FirstGlance]. <br>		<table><tr><td colspan='2'>[[1o7u]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Crifa Crifa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1O7U OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1O7U FirstGlance]. <br>
	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1fg4\|1fg4]], [[1i5g\|1i5g]], [[1o6j\|1o6j]], [[1o81\|1o81]], [[1oc8\|1oc8]], [[1oc9\|1oc9]], [[1ewx\|1ewx]], [[1ezk\|1ezk]], [[1o73\|1o73]], [[1o85\|1o85]], [[1o8w\|1o8w]], [[1o8x\|1o8x]], [[1qk8\|1qk8]]</td></tr>		</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1fg4\|1fg4]], [[1i5g\|1i5g]], [[1o6j\|1o6j]], [[1o81\|1o81]], [[1oc8\|1oc8]], [[1oc9\|1oc9]], [[1ewx\|1ewx]], [[1ezk\|1ezk]], [[1o73\|1o73]], [[1o85\|1o85]], [[1o8w\|1o8w]], [[1o8x\|1o8x]], [[1qk8\|1qk8]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1o7u FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1o7u OCA], [http://pdbe.org/1o7u PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1o7u RCSB], [http://www.ebi.ac.uk/pdbsum/1o7u PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1o7u FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1o7u OCA], [http://pdbe.org/1o7u PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1o7u RCSB], [http://www.ebi.ac.uk/pdbsum/1o7u PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1o7u ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 10:		Line 11:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/o7/1o7u_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/o7/1o7u_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
Line 33:		Line 34:
	[[Category: Bond, C S]]		[[Category: Bond, C S]]
	[[Category: Hunter, W N]]		[[Category: Hunter, W N]]
-	[[Category: ~~Mcsweeney~~, S M]]	+	[[Category: McSweeney, S M]]
	[[Category: Anomalous dispersion]]		[[Category: Anomalous dispersion]]
	[[Category: Crithidia fasciculata]]		[[Category: Crithidia fasciculata]]

OCA at 16:14, 7 February 2016

OCA — Sun, 07 Feb 2016 16:14:08 GMT

←Older revision		Revision as of 16:14, 7 February 2016
Line 14:		Line 14:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1o7u ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 03:07, 10 September 2015

OCA — Thu, 10 Sep 2015 03:07:53 GMT

←Older revision		Revision as of 03:07, 10 September 2015
Line 2:		Line 2:
	<StructureSection load='1o7u' size='340' side='right' caption='[[1o7u]], [[Resolution\|resolution]] 1.50Å' scene=''>		<StructureSection load='1o7u' size='340' side='right' caption='[[1o7u]], [[Resolution\|resolution]] 1.50Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1o7u]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Crithidia_fasciculata Crithidia fasciculata~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1O7U OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1O7U FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1o7u]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Crifa Crifa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1O7U OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1O7U FirstGlance]. <br>
	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1fg4\|1fg4]], [[1i5g\|1i5g]], [[1o6j\|1o6j]], [[1o81\|1o81]], [[1oc8\|1oc8]], [[1oc9\|1oc9]], [[1ewx\|1ewx]], [[1ezk\|1ezk]], [[1o73\|1o73]], [[1o85\|1o85]], [[1o8w\|1o8w]], [[1o8x\|1o8x]], [[1qk8\|1qk8]]</td></tr>		</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1fg4\|1fg4]], [[1i5g\|1i5g]], [[1o6j\|1o6j]], [[1o81\|1o81]], [[1oc8\|1oc8]], [[1oc9\|1oc9]], [[1ewx\|1ewx]], [[1ezk\|1ezk]], [[1o73\|1o73]], [[1o85\|1o85]], [[1o8w\|1o8w]], [[1o8x\|1o8x]], [[1qk8\|1qk8]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1o7u FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1o7u OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1o7u RCSB], [http://www.ebi.ac.uk/pdbsum/1o7u PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1o7u FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1o7u OCA], [http://pdbe.org/1o7u PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1o7u RCSB], [http://www.ebi.ac.uk/pdbsum/1o7u PDBsum]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 24:		Line 24:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 1o7u" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Crithidia fasciculata~~]]	+	[[Category: Crifa]]
	[[Category: Alphey, M S]]		[[Category: Alphey, M S]]
	[[Category: Bond, C S]]		[[Category: Bond, C S]]
Line 34:		Line 35:
	[[Category: Mcsweeney, S M]]		[[Category: Mcsweeney, S M]]
	[[Category: Anomalous dispersion]]		[[Category: Anomalous dispersion]]
		+	[[Category: Crithidia fasciculata]]
	[[Category: Disulfide bonds tryparedoxin]]		[[Category: Disulfide bonds tryparedoxin]]
	[[Category: Electron transport]]		[[Category: Electron transport]]

OCA at 16:23, 5 January 2015

OCA — Mon, 05 Jan 2015 16:23:05 GMT

←Older revision		Revision as of 16:23, 5 January 2015
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1o7u]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Crithidia_fasciculata Crithidia fasciculata]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1O7U OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1O7U FirstGlance]. <br>		<table><tr><td colspan='2'>[[1o7u]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Crithidia_fasciculata Crithidia fasciculata]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1O7U OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1O7U FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1fg4\|1fg4]], [[1i5g\|1i5g]], [[1o6j\|1o6j]], [[1o81\|1o81]], [[1oc8\|1oc8]], [[1oc9\|1oc9]], [[1ewx\|1ewx]], [[1ezk\|1ezk]], [[1o73\|1o73]], [[1o85\|1o85]], [[1o8w\|1o8w]], [[1o8x\|1o8x]], [[1qk8\|1qk8]]</td></tr>	+	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1fg4\|1fg4]], [[1i5g\|1i5g]], [[1o6j\|1o6j]], [[1o81\|1o81]], [[1oc8\|1oc8]], [[1oc9\|1oc9]], [[1ewx\|1ewx]], [[1ezk\|1ezk]], [[1o73\|1o73]], [[1o85\|1o85]], [[1o8w\|1o8w]], [[1o8x\|1o8x]], [[1qk8\|1qk8]]</td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1o7u FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1o7u OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1o7u RCSB], [http://www.ebi.ac.uk/pdbsum/1o7u PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1o7u FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1o7u OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1o7u RCSB], [http://www.ebi.ac.uk/pdbsum/1o7u PDBsum]</span></td></tr>
-	<table>	+	</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 29:		Line 29:
	</StructureSection>		</StructureSection>
	[[Category: Crithidia fasciculata]]		[[Category: Crithidia fasciculata]]
-	[[Category: Alphey, M S.]]	+	[[Category: Alphey, M S]]
-	[[Category: Bond, C S.]]	+	[[Category: Bond, C S]]
-	[[Category: Hunter, W N.]]	+	[[Category: Hunter, W N]]
-	[[Category: Mcsweeney, S M.]]	+	[[Category: Mcsweeney, S M]]
	[[Category: Anomalous dispersion]]		[[Category: Anomalous dispersion]]
-	[[Category: Crithidia fasciculata]]
	[[Category: Disulfide bonds tryparedoxin]]		[[Category: Disulfide bonds tryparedoxin]]
	[[Category: Electron transport]]		[[Category: Electron transport]]

OCA at 11:31, 3 October 2014

OCA — Fri, 03 Oct 2014 11:31:03 GMT

←Older revision		Revision as of 11:31, 3 October 2014
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-	~~{{STRUCTURE_1o7u~~\| ~~PDB~~=1o7u \| ~~SCENE~~= }}	+	==RADIATION INDUCED TRYPAREDOXIN-I==
-	===~~RADIATION INDUCED TRYPAREDOXIN~~-I===	+	<StructureSection load='1o7u' size='340' side='right' caption='[[1o7u]], [[Resolution\|resolution]] 1.50Å' scene=''>
-	~~{{ABSTRACT_PUBMED_12707277}}~~	+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[1o7u]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Crithidia_fasciculata Crithidia fasciculata]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1O7U OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1O7U FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1fg4\|1fg4]], [[1i5g\|1i5g]], [[1o6j\|1o6j]], [[1o81\|1o81]], [[1oc8\|1oc8]], [[1oc9\|1oc9]], [[1ewx\|1ewx]], [[1ezk\|1ezk]], [[1o73\|1o73]], [[1o85\|1o85]], [[1o8w\|1o8w]], [[1o8x\|1o8x]], [[1qk8\|1qk8]]</td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1o7u FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1o7u OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1o7u RCSB], [http://www.ebi.ac.uk/pdbsum/1o7u PDBsum]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/o7/1o7u_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Tryparedoxin (TryX) is a member of the thioredoxin (TrX) fold family involved in the regulation of oxidative stress in parasitic trypanosomatids. Like TrX, TryX carries a characteristic Trp-Cys-Xaa-Xaa-Cys motif, which positions a redox-active disulfide underneath a tryptophan lid. We report the structure of a Crithidia fasciculata tryparedoxin isoform (CfTryX2) in two crystal forms and compare them with structures determined previously. Efforts to chemically generate crystals of reduced TryX1 were unsuccessful, and we carried out a novel experiment to break the redox-active disulfide, formed between Cys-40 and Cys-43, utilizing the intense x-radiation from a third generation synchrotron undulator beamline. A time course study of the S-S bond cleavage is reported with the structure of a TryX1 C43A mutant as the control. When freed from the constraints of a disulfide link to Cys-43, Cys-40 pivots to become slightly more solvent-accessible. In addition, we have determined the structure of Trypanosoma brucei TryX, which, influenced by the molecular packing in the crystal lattice, displays a significantly different orientation of the active site tryptophan lid. This structural change may be of functional significance when TryX interacts with tryparedoxin peroxidase, the final protein in the trypanothione-dependent peroxidase pathway. Comparisons with chloroplast TrX and its substrate fructose 1,6-bisphosphate phosphatase suggest that this movement may represent a general feature of redox regulation in the trypanothione and thioredoxin peroxidase pathways.

-	~~==About this Structure==~~	+	Tryparedoxins from Crithidia fasciculata and Trypanosoma brucei: photoreduction of the redox disulfide using synchrotron radiation and evidence for a conformational switch implicated in function.,Alphey MS, Gabrielsen M, Micossi E, Leonard GA, McSweeney SM, Ravelli RB, Tetaud E, Fairlamb AH, Bond CS, Hunter WN J Biol Chem. 2003 Jul 11;278(28):25919-25. Epub 2003 Apr 21. PMID:12707277<ref>PMID:12707277</ref>
-	~~[[1o7u]] is a 1 chain structure with sequence~~ from ~~[http~~:~~//en~~.~~wikipedia~~.~~org/wiki/Crithidia_fasciculata Crithidia fasciculata]. Full crystallographic information is available from [http~~:~~//oca~~.~~weizmann~~.~~ac.il~~/~~oca-bin/ocashort?id=1O7U OCA].~~	+

-	==~~Reference~~==	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	~~<ref group="xtra">PMID:012707277</ref>~~<references ~~group="xtra"~~/><~~references~~/>	+	</div>
		+	== References ==
		+	<references/>
		+	__TOC__
		+	</StructureSection>
	[[Category: Crithidia fasciculata]]		[[Category: Crithidia fasciculata]]
	[[Category: Alphey, M S.]]		[[Category: Alphey, M S.]]

OCA at 10:36, 16 April 2014

OCA — Wed, 16 Apr 2014 10:36:43 GMT

←Older revision		Revision as of 10:36, 16 April 2014
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-	[[Image:1o7u.png\|left\|200px]]
-
-	<!--
-	The line below this paragraph, containing "STRUCTURE_1o7u", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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	{{STRUCTURE_1o7u\| PDB=1o7u \| SCENE= }}		{{STRUCTURE_1o7u\| PDB=1o7u \| SCENE= }}
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	===RADIATION INDUCED TRYPAREDOXIN-I===		===RADIATION INDUCED TRYPAREDOXIN-I===
-
-
-	<!--
-	The line below this paragraph, {{ABSTRACT_PUBMED_12707277}}, adds the Publication Abstract to the page
-	(as it appears on PubMed at http://www.pubmed.gov), where 12707277 is the PubMed ID number.
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	{{ABSTRACT_PUBMED_12707277}}		{{ABSTRACT_PUBMED_12707277}}

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	==Reference==		==Reference==
-	<ref group="xtra">PMID:012707277</ref><~~ref~~ group="xtra"~~>PMID:010464297<~~/~~ref~~><references ~~group="xtra"~~/>	+	<ref group="xtra">PMID:012707277</ref><references group="xtra"/><references/>
	[[Category: Crithidia fasciculata]]		[[Category: Crithidia fasciculata]]
	[[Category: Alphey, M S.]]		[[Category: Alphey, M S.]]

OCA: Protected "1o7u" [edit=sysop:move=sysop]

OCA — Sat, 02 Jun 2012 09:07:20 GMT

Protected "1o7u" [edit=sysop:move=sysop]

←Older revision

Revision as of 09:07, 2 June 2012