1oe2 - Revision history

OCA at 12:37, 13 December 2023

OCA — Wed, 13 Dec 2023 12:37:17 GMT

←Older revision		Revision as of 12:37, 13 December 2023
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	<StructureSection load='1oe2' size='340' side='right'caption='[[1oe2]], [[Resolution\|resolution]] 1.12Å' scene=''>		<StructureSection load='1oe2' size='340' side='right'caption='[[1oe2]], [[Resolution\|resolution]] 1.12Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1oe2]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/~~"achromobacter_xylosoxidans"_yabuuchi_and_ohyama_1971 "achromobacter~~ xylosoxidans~~" yabuuchi and ohyama 1971~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1OE2 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1OE2 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1oe2]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Achromobacter_xylosoxidans Achromobacter xylosoxidans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1OE2 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1OE2 FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=CU:COPPER+(II)+ION'>CU</scene>~~, ~~<scene name='pdbligand=PG4:TETRAETHYLENE+GLYCOL'>PG4</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.12Å</td></tr>
-	<tr id='~~NonStdRes~~'><td class="sblockLbl"><b>[[~~Non-Standard_Residue~~\|~~NonStd Res~~:]]</b></td><td class="sblockDat"><scene name='pdbligand=~~PCA~~:~~PYROGLUTAMIC~~+~~ACID~~'>~~PCA~~</scene><~~/td></tr>~~	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CU:COPPER+(II)+ION'>CU</scene>, <scene name='pdbligand=PCA:PYROGLUTAMIC+ACID'>PCA</scene>, <scene name='pdbligand=PG4:TETRAETHYLENE+GLYCOL'>PG4</scene></td></tr>
-	~~<tr id~~='~~related'><td class~~=~~"sblockLbl"><b>[[Related_structure\|Related~~:~~]]</b~~></td><~~td class~~=~~"sblockDat"><div style~~=~~'overflow~~: ~~auto; max-height: 3em;~~'>~~[[1bq5\|1bq5]], [[1gs6\|1gs6]], [[1gs7\|1gs7]], [[1gs8\|1gs8]], [[1hau\|1hau]], [[1haw\|1haw]], [[1ndt\|1ndt]], [[1oe1\|1oe1]]~~</~~div~~></td></tr>	+
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1oe2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1oe2 OCA], [https://pdbe.org/1oe2 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1oe2 RCSB], [https://www.ebi.ac.uk/pdbsum/1oe2 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1oe2 ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1oe2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1oe2 OCA], [https://pdbe.org/1oe2 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1oe2 RCSB], [https://www.ebi.ac.uk/pdbsum/1oe2 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1oe2 ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/O68601_ALCXX O68601_ALCXX]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 35:		Line 36:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Achromobacter xylosoxidans ~~yabuuchi and ohyama 1971~~]]	+	[[Category: Achromobacter xylosoxidans]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Dodd~~, F E~~]]	+	[[Category: Dodd FE]]
-	[[Category: Eady~~, R R~~]]	+	[[Category: Eady RR]]
-	[[Category: Ellis~~, M J~~]]	+	[[Category: Ellis MJ]]
-	[[Category: Hasnain~~, S S~~]]	+	[[Category: Hasnain SS]]
-	[[Category: Sawers, G]]	+	[[Category: Sawers G]]
-	~~[[Category: Copper protein]]~~	+
-	~~[[Category: Nitrite reductase]]~~	+
-	~~[[Category: Reductase~~]]	+

OCA at 17:12, 15 December 2021

OCA — Wed, 15 Dec 2021 17:12:51 GMT

←Older revision		Revision as of 17:12, 15 December 2021
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	<StructureSection load='1oe2' size='340' side='right'caption='[[1oe2]], [[Resolution\|resolution]] 1.12Å' scene=''>		<StructureSection load='1oe2' size='340' side='right'caption='[[1oe2]], [[Resolution\|resolution]] 1.12Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1oe2]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/"achromobacter_xylosoxidans"_yabuuchi_and_ohyama_1971 "achromobacter xylosoxidans" yabuuchi and ohyama 1971]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1OE2 OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1OE2 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1oe2]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/"achromobacter_xylosoxidans"_yabuuchi_and_ohyama_1971 "achromobacter xylosoxidans" yabuuchi and ohyama 1971]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1OE2 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1OE2 FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CU:COPPER+(II)+ION'>CU</scene>, <scene name='pdbligand=PG4:TETRAETHYLENE+GLYCOL'>PG4</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CU:COPPER+(II)+ION'>CU</scene>, <scene name='pdbligand=PG4:TETRAETHYLENE+GLYCOL'>PG4</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=PCA:PYROGLUTAMIC+ACID'>PCA</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=PCA:PYROGLUTAMIC+ACID'>PCA</scene></td></tr>
-	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1bq5\|1bq5]], [[1gs6\|1gs6]], [[1gs7\|1gs7]], [[1gs8\|1gs8]], [[1hau\|1hau]], [[1haw\|1haw]], [[1ndt\|1ndt]], [[1oe1\|1oe1]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1bq5\|1bq5]], [[1gs6\|1gs6]], [[1gs7\|1gs7]], [[1gs8\|1gs8]], [[1hau\|1hau]], [[1haw\|1haw]], [[1ndt\|1ndt]], [[1oe1\|1oe1]]</div></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1oe2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1oe2 OCA], [~~http~~://pdbe.org/1oe2 PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=1oe2 RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/1oe2 PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=1oe2 ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1oe2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1oe2 OCA], [https://pdbe.org/1oe2 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1oe2 RCSB], [https://www.ebi.ac.uk/pdbsum/1oe2 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1oe2 ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==

OCA at 07:37, 11 March 2020

OCA — Wed, 11 Mar 2020 07:37:24 GMT

←Older revision		Revision as of 07:37, 11 March 2020
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	==See Also==		==See Also==
-	*[[Nitrite reductase\|Nitrite reductase]]	+	*[[Nitrite reductase 3D structures\|Nitrite reductase 3D structures]]
	== References ==		== References ==
	<references/>		<references/>

OCA at 07:04, 23 May 2019

OCA — Thu, 23 May 2019 07:04:51 GMT

←Older revision		Revision as of 07:04, 23 May 2019
Line 1:		Line 1:

	==Atomic Resolution Structure of D92E Mutant of Alcaligenes xylosoxidans Nitrite Reductase==		==Atomic Resolution Structure of D92E Mutant of Alcaligenes xylosoxidans Nitrite Reductase==
-	<StructureSection load='1oe2' size='340' side='right' caption='[[1oe2]], [[Resolution\|resolution]] 1.12Å' scene=''>	+	<StructureSection load='1oe2' size='340' side='right'caption='[[1oe2]], [[Resolution\|resolution]] 1.12Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1oe2]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"achromobacter_xylosoxidans"_yabuuchi_and_ohyama_1971 "achromobacter xylosoxidans" yabuuchi and ohyama 1971]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1OE2 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1OE2 FirstGlance]. <br>		<table><tr><td colspan='2'>[[1oe2]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"achromobacter_xylosoxidans"_yabuuchi_and_ohyama_1971 "achromobacter xylosoxidans" yabuuchi and ohyama 1971]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1OE2 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1OE2 FirstGlance]. <br>
Line 13:		Line 13:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/oe/1oe2_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/oe/1oe2_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
Line 28:		Line 28:
	</div>		</div>
	<div class="pdbe-citations 1oe2" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 1oe2" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[Nitrite reductase\|Nitrite reductase]]
	== References ==		== References ==
	<references/>		<references/>
Line 33:		Line 36:
	</StructureSection>		</StructureSection>
	[[Category: Achromobacter xylosoxidans yabuuchi and ohyama 1971]]		[[Category: Achromobacter xylosoxidans yabuuchi and ohyama 1971]]
		+	[[Category: Large Structures]]
	[[Category: Dodd, F E]]		[[Category: Dodd, F E]]
	[[Category: Eady, R R]]		[[Category: Eady, R R]]

OCA at 09:47, 1 November 2017

OCA — Wed, 01 Nov 2017 09:47:09 GMT

←Older revision		Revision as of 09:47, 1 November 2017
Line 1:		Line 1:
-	==~~ATOMIC RESOLUTION STRUCTURE OF~~ D92E ~~MUTANT OF ALCALIGENES XYLOSOXIDANS NITRITE REDUCTASE~~==	+
		+	==Atomic Resolution Structure of D92E Mutant of Alcaligenes xylosoxidans Nitrite Reductase==
	<StructureSection load='1oe2' size='340' side='right' caption='[[1oe2]], [[Resolution\|resolution]] 1.12Å' scene=''>		<StructureSection load='1oe2' size='340' side='right' caption='[[1oe2]], [[Resolution\|resolution]] 1.12Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
Line 6:		Line 7:
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=PCA:PYROGLUTAMIC+ACID'>PCA</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=PCA:PYROGLUTAMIC+ACID'>PCA</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1bq5\|1bq5]], [[1gs6\|1gs6]], [[1gs7\|1gs7]], [[1gs8\|1gs8]], [[1hau\|1hau]], [[1haw\|1haw]], [[1ndt\|1ndt]], [[1oe1\|1oe1]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1bq5\|1bq5]], [[1gs6\|1gs6]], [[1gs7\|1gs7]], [[1gs8\|1gs8]], [[1hau\|1hau]], [[1haw\|1haw]], [[1ndt\|1ndt]], [[1oe1\|1oe1]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1oe2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1oe2 OCA], [http://pdbe.org/1oe2 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1oe2 RCSB], [http://www.ebi.ac.uk/pdbsum/1oe2 PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1oe2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1oe2 OCA], [http://pdbe.org/1oe2 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1oe2 RCSB], [http://www.ebi.ac.uk/pdbsum/1oe2 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1oe2 ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 16:		Line 17:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1oe2 ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
Line 27:		Line 28:
	</div>		</div>
	<div class="pdbe-citations 1oe2" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 1oe2" style="background-color:#fffaf0;"></div>
-
-	==See Also==
-	*[[Nitric reductase\|Nitric reductase]]
	== References ==		== References ==
	<references/>		<references/>

OCA at 07:53, 11 September 2015

OCA — Fri, 11 Sep 2015 07:53:53 GMT

←Older revision		Revision as of 07:53, 11 September 2015
Line 2:		Line 2:
	<StructureSection load='1oe2' size='340' side='right' caption='[[1oe2]], [[Resolution\|resolution]] 1.12Å' scene=''>		<StructureSection load='1oe2' size='340' side='right' caption='[[1oe2]], [[Resolution\|resolution]] 1.12Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1oe2]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Achromobacter_xylosoxidans Achromobacter~~ xylosoxidans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1OE2 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1OE2 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1oe2]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"achromobacter_xylosoxidans"_yabuuchi_and_ohyama_1971 "achromobacter xylosoxidans" yabuuchi and ohyama 1971]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1OE2 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1OE2 FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CU:COPPER+(II)+ION'>CU</scene>, <scene name='pdbligand=PG4:TETRAETHYLENE+GLYCOL'>PG4</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CU:COPPER+(II)+ION'>CU</scene>, <scene name='pdbligand=PG4:TETRAETHYLENE+GLYCOL'>PG4</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=PCA:PYROGLUTAMIC+ACID'>PCA</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=PCA:PYROGLUTAMIC+ACID'>PCA</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1bq5\|1bq5]], [[1gs6\|1gs6]], [[1gs7\|1gs7]], [[1gs8\|1gs8]], [[1hau\|1hau]], [[1haw\|1haw]], [[1ndt\|1ndt]], [[1oe1\|1oe1]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1bq5\|1bq5]], [[1gs6\|1gs6]], [[1gs7\|1gs7]], [[1gs8\|1gs8]], [[1hau\|1hau]], [[1haw\|1haw]], [[1ndt\|1ndt]], [[1oe1\|1oe1]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1oe2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1oe2 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1oe2 RCSB], [http://www.ebi.ac.uk/pdbsum/1oe2 PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1oe2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1oe2 OCA], [http://pdbe.org/1oe2 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1oe2 RCSB], [http://www.ebi.ac.uk/pdbsum/1oe2 PDBsum]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 26:		Line 26:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 1oe2" style="background-color:#fffaf0;"></div>

	==See Also==		==See Also==
Line 33:		Line 34:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Achromobacter xylosoxidans]]	+	[[Category: Achromobacter xylosoxidans yabuuchi and ohyama 1971]]
	[[Category: Dodd, F E]]		[[Category: Dodd, F E]]
	[[Category: Eady, R R]]		[[Category: Eady, R R]]

OCA at 15:53, 5 January 2015

OCA — Mon, 05 Jan 2015 15:53:30 GMT

←Older revision		Revision as of 15:53, 5 January 2015
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1oe2]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Achromobacter_xylosoxidans Achromobacter xylosoxidans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1OE2 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1OE2 FirstGlance]. <br>		<table><tr><td colspan='2'>[[1oe2]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Achromobacter_xylosoxidans Achromobacter xylosoxidans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1OE2 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1OE2 FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CU:COPPER+(II)+ION'>CU</scene>, <scene name='pdbligand=PG4:TETRAETHYLENE+GLYCOL'>PG4</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CU:COPPER+(II)+ION'>CU</scene>, <scene name='pdbligand=PG4:TETRAETHYLENE+GLYCOL'>PG4</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=PCA:PYROGLUTAMIC+ACID'>PCA</scene></td></tr>	+	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=PCA:PYROGLUTAMIC+ACID'>PCA</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1bq5\|1bq5]], [[1gs6\|1gs6]], [[1gs7\|1gs7]], [[1gs8\|1gs8]], [[1hau\|1hau]], [[1haw\|1haw]], [[1ndt\|1ndt]], [[1oe1\|1oe1]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1bq5\|1bq5]], [[1gs6\|1gs6]], [[1gs7\|1gs7]], [[1gs8\|1gs8]], [[1hau\|1hau]], [[1haw\|1haw]], [[1ndt\|1ndt]], [[1oe1\|1oe1]]</td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1oe2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1oe2 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1oe2 RCSB], [http://www.ebi.ac.uk/pdbsum/1oe2 PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1oe2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1oe2 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1oe2 RCSB], [http://www.ebi.ac.uk/pdbsum/1oe2 PDBsum]</span></td></tr>
-	<table>	+	</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 34:		Line 34:
	</StructureSection>		</StructureSection>
	[[Category: Achromobacter xylosoxidans]]		[[Category: Achromobacter xylosoxidans]]
-	[[Category: Dodd, F E.]]	+	[[Category: Dodd, F E]]
-	[[Category: Eady, R R.]]	+	[[Category: Eady, R R]]
-	[[Category: Ellis, M J.]]	+	[[Category: Ellis, M J]]
-	[[Category: Hasnain, S S.]]	+	[[Category: Hasnain, S S]]
-	[[Category: Sawers, G.]]	+	[[Category: Sawers, G]]
	[[Category: Copper protein]]		[[Category: Copper protein]]
	[[Category: Nitrite reductase]]		[[Category: Nitrite reductase]]
	[[Category: Reductase]]		[[Category: Reductase]]

OCA at 15:39, 28 September 2014

OCA — Sun, 28 Sep 2014 15:39:28 GMT

←Older revision		Revision as of 15:39, 28 September 2014
Line 1:		Line 1:
-	[[~~Image:~~1oe2.~~png~~\|~~left~~\|200px]]	+	==ATOMIC RESOLUTION STRUCTURE OF D92E MUTANT OF ALCALIGENES XYLOSOXIDANS NITRITE REDUCTASE==
		+	<StructureSection load='1oe2' size='340' side='right' caption='[[1oe2]], [[Resolution\|resolution]] 1.12Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[1oe2]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Achromobacter_xylosoxidans Achromobacter xylosoxidans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1OE2 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1OE2 FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CU:COPPER+(II)+ION'>CU</scene>, <scene name='pdbligand=PG4:TETRAETHYLENE+GLYCOL'>PG4</scene><br>
		+	<tr><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=PCA:PYROGLUTAMIC+ACID'>PCA</scene></td></tr>
		+	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1bq5\|1bq5]], [[1gs6\|1gs6]], [[1gs7\|1gs7]], [[1gs8\|1gs8]], [[1hau\|1hau]], [[1haw\|1haw]], [[1ndt\|1ndt]], [[1oe1\|1oe1]]</td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1oe2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1oe2 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1oe2 RCSB], [http://www.ebi.ac.uk/pdbsum/1oe2 PDBsum]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/oe/1oe2_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	We provide the first atomic resolution (<1.20 A) structure of a copper protein, nitrite reductase, and of a mutant of the catalytically important Asp92 residue (D92E). The atomic resolution where carbon-carbon bonds of the peptide become clearly resolved, remains a key goal of structural analysis. Despite much effort and technological progress, still very few structures are known at such resolution. For example, in the Protein Data Bank (PDB) there are some 200 structures of copper proteins but the highest resolution structure is that of amicyanin, a small (12 kDa) protein, which has been resolved to 1.30 A. Here, we present the structures of wild-type copper nitrite reductase (wtNiR) from Alcaligenes xylosoxidans (36.5 kDa monomer), the "half-apo" recombinant native protein and the D92E mutant at 1.04, 1.15 and 1.12A resolutions, respectively. These structures provide the basis from which to build a detailed mechanism of this important enzyme.

-	~~{{STRUCTURE_1oe2\| PDB=1oe2 \| SCENE= }}~~	+	Atomic resolution structures of native copper nitrite reductase from Alcaligenes xylosoxidans and the active site mutant Asp92Glu.,Ellis MJ, Dodd FE, Sawers G, Eady RR, Hasnain SS J Mol Biol. 2003 Apr 25;328(2):429-38. PMID:12691751<ref>PMID:12691751</ref>

-	~~===ATOMIC RESOLUTION STRUCTURE OF D92E MUTANT OF ALCALIGENES XYLOSOXIDANS NITRITE REDUCTASE===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_12691751}}~~	+
-		+
-	~~==About this Structure==~~	+
-	~~[[1oe2]] is~~ a ~~1 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org/wiki/Achromobacter_xylosoxidans Achromobacter xylosoxidans]~~. ~~Full crystallographic information is available from [http:~~/~~/oca.weizmann.ac.il/oca-bin/ocashort?id=1OE2 OCA].~~	+

	==See Also==		==See Also==
	*[[Nitric reductase\|Nitric reductase]]		*[[Nitric reductase\|Nitric reductase]]
-		+	== References ==
-	==~~Reference~~==	+	<references/>
-	<~~ref group="xtra">PMID:012691751<~~/~~ref~~><~~references group="xtra"~~/>	+	__TOC__
		+	</StructureSection>
	[[Category: Achromobacter xylosoxidans]]		[[Category: Achromobacter xylosoxidans]]
	[[Category: Dodd, F E.]]		[[Category: Dodd, F E.]]

OCA at 17:15, 20 October 2012

OCA — Sat, 20 Oct 2012 17:15:21 GMT

←Older revision		Revision as of 17:15, 20 October 2012
Line 8:		Line 8:

	==About this Structure==		==About this Structure==
-	[[1oe2]] is a 1 chain structure ~~of [[Nitric reductase]]~~ with sequence from [http://en.wikipedia.org/wiki/Achromobacter_xylosoxidans Achromobacter xylosoxidans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1OE2 OCA].	+	[[1oe2]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Achromobacter_xylosoxidans Achromobacter xylosoxidans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1OE2 OCA].

	==See Also==		==See Also==

OCA: Protected "1oe2" [edit=sysop:move=sysop]

OCA — Fri, 27 Jul 2012 00:19:41 GMT

Protected "1oe2" [edit=sysop:move=sysop]

←Older revision

Revision as of 00:19, 27 July 2012